RNA id: XM_034299987.1


Basic Information

Item Value
RNA id XM_034299987.1
length 1166
RNA type mRNA
GC content 0.47
exon number 13
gene id necab3
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10934704 ~ 10974521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTAATGTGGATGCATCTCTGTTGTTCCACTCTGGAACCTAAACATTGccgtgttacagagaaatcggAACCTGTCAGGAATGTaatggaaaacttaaaggaacagcttcacctctgactgttaagcgctgacactggagactccttccataaatgATTTTCCGCCGTGCAGACAAAAATGATGATGGCAAGCTCTCCTTTGAGGAATTCAAGGCTTACTTTTCTGATGGGATTCTCACGACTGAAGAGCTTCAGGAGCTGTTCTACTCAATCGATGGGCGACAGACAAACAACCTTGACACCGACAAGTTATCAGATTATTTTTCTCAACATCTTGGGGAATATCTGAATGTCCTCTCAGCTCTAGAGAAACTCAACGTTGCCATCCTAAAAGCAATGGACAAGACTAAAGAGgagtATCAGGGCTCGTCCGTGTTGGGGCAGTTTGTGACACGCTTTATGCTGAGGGAGACGTCCAGCCAGCTGCTCTCTCTTCAGATGTCTCTGCAGTGTGCCATGGAGGCCGTGGAGGAGCAGAGCAGCCCTGCACCGGTTGAGGTGAAGGTACCAGAGCatctctccttacagaagaatAACAGGAGGTGTGGCCGCAGAGTGCAGAAAAACATGTGCCTCTCTCCTACAGACCCATACTCTGGCATCCTTACCACAGGTGTTACTGTGGATACAGATGACCACTGGTCCTCTCAGATCAACAGACTGCAACAGCTCATTGACAAACTGGAGTGCCAGAGTCCAAAGCTGGAGCCGCTGAAAGAGGACCCACTTGCCAGCACATATAAATCAAACATTCTGTTGGTGCAGAGGCAGATGGCAGTGACGGAGGACAATCTTGAGGAGTTTCAAAAGGCCCTGAAAAGCTACGCTGACTCCACCACCAACCAAAGTGACAACCTTCAtgtgtcCATCCAGAAGCTGCCTGAGAAGAGCTGCTATATAATATACGAGTTTTGGCAAGATCGTATATCCTGGATGAGttatCTGCAGTCTGAGGCGAGCAAGACTTTTCAGCGCTGTATCATAGATATGCTGGAGGATCCTGAACTCGTCTCCACCATGCTTATGCCTGcaTCCTGGTGGATTATGACAAACAATTAACCTCCACAATATGCAGTATGCAACCTttgcaaatgagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29633 lncRNA upstream 20031 10916056 ~ 10918504 (+) True G25035
TU29576 lncRNA upstream 91410 10821467 ~ 10847125 (+) True G24989
TU29341 lncRNA upstream 448247 10489288 ~ 10490288 (+) True G24759
TU29333 lncRNA upstream 485773 10452249 ~ 10452762 (+) True G24751
XR_003403528.2 lncRNA upstream 542991 10381401 ~ 10395544 (+) True LOC113534804
TU29719 lncRNA downstream 259601 11234122 ~ 11234603 (+) True G25110
XR_004579381.1 lncRNA downstream 350889 11325410 ~ 11327031 (+) True LOC117598838
XR_004579383.1 lncRNA downstream 351371 11325892 ~ 11327031 (+) False LOC117598838
XR_004579382.1 lncRNA downstream 351371 11325892 ~ 11327031 (+) False LOC117598838
TU29983 lncRNA downstream 452878 11427399 ~ 11427789 (+) True G25344
XM_026930188.2 mRNA upstream 570518 10354311 ~ 10368017 (+) False tfap2c
XM_034300033.1 mRNA upstream 570518 10354327 ~ 10368017 (+) False tfap2c
XM_026930172.2 mRNA upstream 570518 10356414 ~ 10368017 (+) True tfap2c
XM_026930180.2 mRNA upstream 570518 10356414 ~ 10368017 (+) False tfap2c
XM_026916832.2 mRNA upstream 623010 10289199 ~ 10315525 (+) True rtf2
XM_026923214.2 mRNA downstream 53787 11028308 ~ 11058982 (+) True snta1
XM_034312255.1 mRNA downstream 238824 11213345 ~ 11252653 (+) True ralgapb
XM_034312256.1 mRNA downstream 238824 11213345 ~ 11252653 (+) False ralgapb
XM_034312270.1 mRNA downstream 238824 11213345 ~ 11252653 (+) False ralgapb
XM_034312260.1 mRNA downstream 238824 11213345 ~ 11252653 (+) False ralgapb
TU29627 other upstream 29963 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 183913 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 740080 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1031364 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1341681 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 1230008 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 1551649 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 2291506 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 2521335 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 2521336 13495857 ~ 13499365 (+) False tshba

Expression Profile