RNA id: XM_026927289.2


Basic Information

Item Value
RNA id XM_026927289.2
length 3629
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC113534455
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13570759 ~ 13578479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGCTGTAAAGCATCCCCGCGCGCGCGCTGCTTCGCGCCACCCGATGGCTTTTCTCCTAGGGAAATGCATCAATCACCCCTGCGTGCTCGAAAAGCTTAATGGGTTTgcgttgttgttttgaaacgAAAACCCGATCGCGCCATTTTCATGTGAAAGGCTTTCACGCGCGCTCGGGGTTGCAGGCTGTCACTTGGCTGTGTGCCTGTGAAGTGTTTCGCGCTCGACTGGAATCGGTTGCCTGCTCTTTCAACACGTgctctgctgttttgttttacgGAAACGCTGTTGGCATTGTCATTGAGAAAATTTCTGGTCGGTGACTGGATGCATTCCATTGAACGGGGTTGCTGTTTCAAATTGTGAAATTGATTTCTTTCCTGAGAAATTTCTACCGACGAATACCTCGCTGGATTTTATTCACTTTGTATGAATGGGTGTATTTtcgtagaaaaaaaaaagtgagactGGGAATTGATGTTTATGCCAACTTAGGTTCTGATTTGGCGAGGATGCGTGAAGCGCACGCGCGCTGTGGGCGGGAATAGACGCGCGTTTATAAAGGACGCTGCGCGCGCCGTGAGGCGGCGACACCGCGCGGAAACGGCTGTCAGGAGCGCAGAGGACTGAGTGAAGACGCGAGGGAAGTCTTTTTTAATTCAGTCCAAGCTGGGTGGGAGAGGCGCGCCTCTCTCGGGCCCCTTGTCGCCTCTCCCCACCCCCTCGGTATGGATGAACACTTCAACCTCATAGACTCGCCGTCGACGCGCCACAGGGGGAACAACGCCGAGAATCACGGCTACGCGGAAACAGAAAAGGGCAGCATGACGGTGATGGCGGCGGAGCTGCTGGAGGAATCAGCCGCGCTGCCCGGCCACCTGTCGCTGGATCGATATGAGGCGGAGCACGAGTGCTGCGAGAGAGTGGTCATCAACATCTCGGGCCTGCGCTTCGAGACGCAGCTCAAAACTTTCAACCAATTTCCGGACACCTTGCTCGGCGACCCGAAAAAGAGGATGCGCTACTTCGATCCGCTCAGGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGACGCCATCCTCTACTACTACCAGTCGGGCGGGCGCATCCGGAGACCCGTCAACGTGCCCATAGACATCTTCTCGGAGGAGATCCGCTTTTATCAGCTTGGCGAGGAGGCGATGGAGAAATTTCGGGAGGACGAGGGTTTTATCAAAGAAGAGGAGCGCCCCTTGCCTAGCCATGAGTTCCAGAGGCAAGTCTGGCTTTTATTTGAGTACCCGGAGAGCTCAGGCCCGGCCAGGGGCATCGCCATCGTGTCAGTACTGGTCATTCTCATCTCCATCGTCATTTTCTGTCTGGAAACTTTGCCAGAGTTTAGGGACGATAAGGATCCGGTCACTGTAGCGCCTGTAATAAACGGAACTGGCCCGTACGGGTCAGGCTCTTTTACCGACCCGTTTTTTGTGATCGAGACGCTTTGCATAATTTGGTTCTCCTTCGAGCTGCTTGTCCGCTTCTTCGCCTGCCCCAGCAAAGCCACCTTTTCCAAAAACATCATGAACATAATCGACATCGTGGCTATAATTCCATACTTCATCACGCTGGGTACAGAGTTGGCTGAAAGACAGGGCAATGGGCAGCAGGCCATGTCCCTGGCCATCCTGCGCGTGATCCGCCTAGTGCGAGTGTTTCGCATCTTCAAGCTGTCGCGCCACTCCAAGGGCCTCCAGATCCTTGGGCAGACGCTCAAAGCCAGCATGCGGGAACTTGGcttgcttatttttttcctttttatcgGGGTCATTTTATTCTCCAGCGCTGTGTACTTCGCAGAGGCGGACGACCCAGCCTCCAGCTTCAGCAGCATCCCGGACGCGTTCTGGTGGGCCGTGGTTACCATGACTACGGTGGGCTACGGAGACATGCACCCGGTGACCATCGGCGGGAAGATCGTCGGCTCGCTGTGTGCCATCGCTGGGGTTTTGACGATCGCGCTGCCCGTGCCCGTCATCGTCTCCAATTTCAACTACTTCTACCACCGGGAGACGGACGGCGAGGAGCACGCGCAGTACCTGCACACGGGCAGCTGCGAGCATCTCGACTCCGCGGAGGAGATGAAACGGACGCGGAGCACCTCGTCACTCAGCAAATCGGAGTACATGGTGATAGAGGAGGGCATAAACAGCGGCTTTAAGCAGGCCAACTACACAAACCAAAACAATCAGAACTGCGTAAACATCAAAAAGATTTTCACTGACGTGTAAATCAAGCGCAGGTCCAGTCGGCGATGCTCCTCAGATCACCTCCACTTTACTCTAGGATTTTCTTCATGCAGACCCTGTGCGCGGACTACAACCTGCTGGCCTGCAGAGGATCATGCATTCTCTATAGCGGTTAAAAGTGGACGAAGGGCGGGTCAGGGACGTTAAATAACCTACAAACAATAATCAGTCGTCTGTGATTGTCCGTCTGCATTTGTTCTCAGTGTTATATAGCCTATATAATCGTCATCATACGTATTGGCAATATATTACAATCAAACAAATGCCTGTTAATGTGATGAAACGCTATATTTTCGGAGGTCACGTGTTAGTGTCACATGAATTTTGTTAGTATATAAGTGCAGATTCCATTTTAACAAACTGAACGTCTGTGGATGAACCATCAATctgtcaaatatatatatatagcctattgtatgtatttattaatcaaaCCGCCTTTACCTATACCAAATAACTATGTGTTATACAAAATGAAAGGATTGGTTGTTATAGCtcaaaaaaatgctttattttgtgtagaaaaaaaGGTGTGTGAAAACAGTTATCCCCAAATCGATGTTAAGTGCTGTAATCAGCCACATAAAAAGCTAAGTTTCCCCCAAATTTCTATTTATCATCTCCCTGTAGAATTCCCCACGATTAGCATTCGGGAAAAGACACAGTAGGTAGGCATCAAAAGAAAACACTGTCGTTTCTTGCATGAGAAAACAGGACTGGGCTGAGCACGCGCGGATTCGCCTCCCCGTCGAGACCCCTGGCTCCGCCCTATGATGCAGTCTCCATAGCGACCACAGTTTCCTGGGAGGTAAAGATCAGGACCTTGTACTATTAAAGATTTCAGCTGATGGGCATCAAGCTGACCTGTGGCTCTATTCCAAACTGGGAAGAGAAGTTTTAAAGATACAGATCCAGACTTATCAACAACCACTAGGCACAGGACAAAGCACAGGACAAAGCACACAAACTCATCTAAGAGATGTCCGCATTGTTGTATATCACCTTCTCATCATATGAAGACTCTAGAAGTGGCCTTGTTCATTGGATACACTGCCAGATTGAATGTATATAACCAATCAGACAGACACTCAAGGGACTGAAGCTGATTACCTTTGACATAACTGCCTACTGCAGTGAGATATATATTAGTGAGGATGGTTTTTGGTATGTTCTTCATGTATTCACCGTTTGTGCTGTTTTCAAACCAGATGTCTGTGTATAAGTGTGTTGTTATTAAGGCAATGTTTACGTATTAACTATATTAGACATTCCAAGCACTGAAGCACCAAAACTCTCAATGTTTTTTGATGAGATGAACTAATAAAATGGGTTACAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31569 lncRNA upstream 53356 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 73030 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 196263 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 196949 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 196949 13351846 ~ 13373810 (+) False LOC113533310
TU31688 lncRNA downstream 48002 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 243905 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 255760 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 294836 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 422452 14000931 ~ 14054690 (+) True G26921
XM_034312744.1 mRNA upstream 55230 13510328 ~ 13515529 (+) False slc25a55a
XM_034312745.1 mRNA upstream 55230 13511573 ~ 13515529 (+) True slc25a55a
XM_026921662.2 mRNA upstream 64755 13498933 ~ 13506004 (+) False tshba
XM_026927047.2 mRNA downstream 6613 13585092 ~ 13590794 (+) True LOC113534264
XM_026926971.2 mRNA downstream 6613 13585092 ~ 13590794 (+) False LOC113534264
XM_034309834.1 mRNA downstream 18370 13596849 ~ 13612881 (+) False LOC113537237
XM_026931635.2 mRNA downstream 18370 13596849 ~ 13612881 (+) True LOC113537237
XM_034309826.1 mRNA downstream 18370 13596849 ~ 13612881 (+) False LOC113537237
XR_004577012.1 other upstream 69463 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 71394 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1613105 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1700348 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2602839 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5196291 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5238923 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile