RNA id: XM_026927376.2


Basic Information

Item Value
RNA id XM_026927376.2
length 3953
RNA type mRNA
GC content 0.41
exon number 6
gene id h6pd
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12020246 ~ 12026634 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATACTGGTATTAAAACTCAGGCCAAACAACCGGTGATGAGGACCTAAGTACTGATTATCTTATTAAGACACCTAAACTGCTGCTAGAACTAAgGGTTTGGTGAAACCATGTGGAGGATAAGATGGTGTCTGCTGCTGCTGGCCACCACATGTTGGCTAAGAGGCCACACCAAAGACAGTGATGATCCTCCGCGTCCTGGGCACGTGTCTGTGGTTATTGTAGGTGGCACCGGTGACCTGGCCAAAAAATACCTTTGGCAAGGATTTTTTCATCTTTATGCCACCCAAGTAGGCAAAGGCCACACCTTCTCCTTCTATGGAGGCGGCCTCTCATCAGCTGAGAATGGCACTCCGCTGCTGTTTGAAATATTAAAGGAGCTGAAGTGCCCATCAGAACTTACGACTGAGCGTTGTGCTCTGGTTAAAGAGCAGTTCTTGCGACTGTCCCAGTACTTGCAGCTTAAGAGCATGGAGGATTATGAGAAGCTCAGTGAACAGATCCAGGTGCAGCTGAAGCAGGAGGGTATGATGGAAGCAGGAAGGCTCTTTTACATGTCTGTTCCAGCCTTCGCTTATGCTGAAATTGCAGAAAAGATCAATAGCACCTGTAGGCCCCCAGCTGGAGCATGGCTCAGGGTTGTTCTGGAGAAGCCATTCGGGCACAGTTTCAACAGCGCCCAACTTCTAGCCTCACAGCTGTACAGTTTTCTGCAAGAGGAGGAGATGTACAGGATTGATCACTATTTAGGGAAGCAGGTTGTCTCCCAGATATTGCcctttaggaaaaaaaatcataaaattctAAAGCCAATTTGGAACAAGCACCACATTGAGAGAATAGAGATTGTGTTGAAGGAAACGTTGGATTGCAAAGGCCGGATTCAGTTTTATGACCAATACGGGGTTATTAGAGACATGCTCCAGAACCACCTTACGGAAATTATGACCCTTCTGATGATGAACATACCTGCTAACCTCTCCAAAAGTGAAGAGGTCCTACAGAACAAGCTCAAAGTCTTCAGTGGCCTTGATTACCTTGATAAGAGCAGTGTGGTTATAGGTCAGTATCAGGGCTATAATGCAGAAGTCCAGATGAAACTCAACAAAACAAAGGATTATTTCAGCCTTACCCCAACTTTTGCTGGTGTGGTCATCATTGGAAACAGTCCTCAGTATGACGGCATTCCCATATTTATGTCATCGGGTAAGATGCTTGACGAACGTGTTGGATATGCTCGAgttattttcaaaaatgacaaattttgCATTCAGGAATACAACAGTGTCCACTGCAAACCCAAACAGATTGTATTCTATCTCGGCCATGGGAATCTCCAGTATTCAGCAATTCTTGTTAGCAAAAATTTGTTTAAGCCAGACCTGGTAAATAGTGATTGGAAAGAAGTTACTGAGCATAAAGACATTTCTGTGCTTGGGTTACCACTCTCTGACTATCACATCCAGTCCCCAGAGGTGCCCACAGAGGCTTATTATGAGCTCATATCTAAGGTGTTCTATGGACGTAAGGATAGCTTTGTCAGTGCTGAGAACCTCATGGCCTCATGGGCTTTCTGGACACCGCTCTTGAACAGCCTCATCAATGTCGTTCCACGGCTGTACCCAGGTGGTTCCGGTAACGGTGACCTTCTGAACTTTCAGCTGCAAGGTCATCTGGTTGGTTTCATTAGTGATGAGGAGGTGAATGTGATTCAGCAAGGTCCTGAAGAGAACTTCCAGGTTATGCAAGGGAAGTTCCGCAGTGCCGACATGGTGTCTGCCTGGTCCAAAGAACTAGTGGAGCGCTTAGCCTCTGACCTGCACAATGTGGCAGAAGAGGTAGTTCAAGCTGAAGGTCAGTTCCATCTGGCCTTGTCAGGTGGTTCCAGTCCCATTGCCCTGTTTCTTGAGCTTGCACAGCACCACTACACCTTCCCGTGGCACAGCACTCACGTGTGGTTAGCGGACGAGCGGTGTGTGCCACCCACTGAGGCAGATTCCAACTTCCGTTCCATTCACGACCAGCTACTGCAGAATGTCCACATTCCTTACTTCAACATCCACCCCATGCCAGTGCAGCTCAACCAGCGCTTGTGTGTTGAGGAAGATGGGGGTGCTCTTTATGAGAAGCAAATAAGCCAGCTAGTCAATGGCTCTCGTTTCCATTATATACTGCTTGGTGTAGGTGAGGATGGTCACACTGCTTCACTGTTCCAAGACACCAATCTGCAGAATAGTGGGAAAAGACTGGTGGCCCTGACTGAAAGTCCAGTTAAGCCTCACCAGCGGATGAGTCTTACATTCACTGCCATCAACAAAGCTCACAGGGTAGGGGTACTGATAATGGGGAAGAGAAAACATGAGCTTGTTGTTCAACTCAGTAGAATTAAGGGTGAAACTCCCAAGTATCCAATCACAAGTGTACAGCCAAAAGATGGCCATCTAATATGGTATATAGACTATGATGCACTTTTAGGATAACCTCCTAAATAACCTCAGGAATACCAGAGTATAGTTAATTAAAATACTCAGTTTACTATAATATCAGGGACCCACTGGGTGTTTTGGGGATTTGACTAATattctattatttataaaacacattttttattctgcATAATAATGCAGGCAGAAACTTAATGTAGAAATATCAGCATGGAAGTGGAACTGCCTTGCAATAAGTGAGATGTGATTAAAACACATTGATAATAATAGTTGTTACGTCCAGAAATCCTGTGTTGGATTTTTTATTGGGGAAAAACAGAATTGTAAAGAGAAAACTGAGAGGTCATCTTTTATTATTGTCCACTTGTCCACTTTTTCAGTCTTTGTATAATAGACTACATTGCATAATTTTCTATTTCACTGCATTACTTGTTTTCTATTTCTATGCCTTTCAGTTGGTTTGCAAACTACGACActgtgaatattaatattaaaacaaaataaatttgatAGTTGAAATAGTTCATTGTGCTAAACTTAAAAAGAAGGgaagtttaaaatttttatgaacaacatgttttattctaaaaatctaaaacccTGAGTGGGTTATAGAGACTGCCTTGTAATTGCCTCATGATACGAGTATTTAAACACGCTGGTCTTCAAGGCGTGCATGCAGCCTCTGTTAGGACTGATTTTTAAGGTATACATATGGATGCATGGTCTcataatatgtttataattataatataattatatgctataattatatatttctgatAATTATATCATTGGTCTGAATGTGATTggactgagtgtgtgtctggGAAGCTTTCTCAAATCCATTGGCTTCCCAGACACTGGCTTGTGAAATTTTGAAGGTTGctatttgtatatattaatgTGAGTAGTCTTTTGACTATAGTACCAGCAGAAAGTGGCTTTCCAGTTCGCCAATTCCATATTGGCTTTTTAAGTCGGGCATTccagaaatatacaaaattactTGTCACTATGtgcaactaaaaaaaatacctCAGAAAAATAAGTGCCTTATCTTTTGTAATAATTATTAGTGTTGGAAGCCTGGCACAAACCCATTTATGTTCATTCAAAGGTTAACTCcccatttcattaaaaaaatatatgaaatcgTACATTGTATGGAAAAACATTATTGTGGATAGCACAGGGAAGGGGGGATGACACTGGAGTAGAATTTTCATTGACATGCATAAAAATGACTTGAATATCTGATATAAAGTGTATAAGTGATTTTTATATTGGTTTCCATTTTTATGGTAGTTGAAATTATGTAGTCTGGTTCAAATGTTTTGGTTGACtaacaaatgaaatgttattATACCAAGTATTGTAAAATCTTAGCTGAAATCACAATGTAAAATTGAACagataaaaatgcattataGAGTGACATTCCATTCAGTAAGAATTCACTATATGAAAGATTTGTCAAAGAgtgaaataaagttttattatattaga

Function

GO: NA

KEGG:

id description
K13937 H6PD; hexose-6-phosphate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403381.2 lncRNA upstream 45257 11957228 ~ 11974989 (+) False LOC113533008
XR_003403384.2 lncRNA upstream 45257 11957253 ~ 11974989 (+) True LOC113533008
XR_003403548.2 lncRNA upstream 214787 11803590 ~ 11805459 (+) True LOC113534932
TU30103 lncRNA upstream 228121 11732424 ~ 11792125 (+) True G25452
XR_004579590.1 lncRNA upstream 332022 11668819 ~ 11688224 (+) True LOC117599151
TU30578 lncRNA downstream 248218 12274852 ~ 12275052 (+) True G25872
TU30588 lncRNA downstream 266289 12292923 ~ 12293129 (+) True G25882
TU30592 lncRNA downstream 268977 12295611 ~ 12296042 (+) True G25886
XR_004580102.1 lncRNA downstream 276290 12302924 ~ 12309500 (+) True LOC117599716
TU30616 lncRNA downstream 381687 12408321 ~ 12408523 (+) True G25907
XM_026923995.2 mRNA upstream 82683 11902218 ~ 11937563 (+) True shmt2
XM_026947319.2 mRNA upstream 127506 11832707 ~ 11892740 (+) True LOC113547077
XM_026947391.2 mRNA upstream 127506 11832707 ~ 11892740 (+) False LOC113547077
XM_026927166.2 mRNA upstream 259643 11754563 ~ 11760603 (+) True LOC113534407
XM_034312216.1 mRNA upstream 267028 11695632 ~ 11753218 (+) False LOC113526407
XM_026917519.2 mRNA downstream 5413 12032047 ~ 12035789 (+) True cenps
XM_026911066.2 mRNA downstream 156413 12183047 ~ 12203172 (+) False cfap20dc
XM_026911010.2 mRNA downstream 156467 12183101 ~ 12203172 (+) True cfap20dc
XM_026911202.2 mRNA downstream 156467 12183101 ~ 12203172 (+) False cfap20dc
XM_026911131.2 mRNA downstream 156467 12183101 ~ 12203172 (+) False cfap20dc
TU29627 other upstream 1111674 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1265624 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1821791 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 2113075 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 2423392 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 177895 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 499536 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1239393 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1469222 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1469223 13495857 ~ 13499365 (+) False tshba

Expression Profile