RNA id: XM_026928304.2


Basic Information

Item Value
RNA id XM_026928304.2
length 4192
RNA type mRNA
GC content 0.40
exon number 2
gene id lurap1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20963389 ~ 20978637 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atacGGCAGCTGACTcgcagtgctgtgtgtttgttttattcagcaCTGGCTGTCATGCAGGTGGAATTTGCGTTTCGGCTTTTGCCACAGTGATGGAGCAAAACTGAGCAACTGAGTTCATCAGATTCGGAGGATTAGTGATTTCAGATCAGATTCCAGACAGAACAAATTCTCCACTCGCTATTAATCCGATGTTATGGAGCTGTCATAGTGGCATATGGTACTAAACTGGAAAGGGTCTTGCTGCTGCGCACCTGAGGATGGACAgtattttggaaaaataaacagaacagtatttttttaagaagctcagtatatatttttttcccatgtcACTGCGTCAATCAtacctttttttctgtgaatAGCGCAAAGATTTGTATAGCTTGATGACTTGATGattctcattcattcatgtattgTGTAGCTGTGTAAAGCAGAACTGAATGGGCAGTGAGAATGCTCTCTGTAGCTGAGTGCACGGTTTAAACCAGCCTGCCAGCTCGACACGACAGCACCAACTGAGAAATCGCAGTGAAAGCAGCTGTTTTTTTGTATACACCACATCATGGAAGAAGTTAGTGGCAGTGAATGTGTGCCCGATCTGAAAGAGTTGGAGGTGAAGGTGGGGAGGAAGACGCCGGAGGGTTTGCTCAGGTGGATGCGGCAGGACGCAGCGCAACGCGGCGAGCAGAGCAAAGTCATCCGGCAGGAGAGCGCACACAGCGCCGAGCATGCACTGGATGAGAAGATCAGGAAGCTCAAAGTCGAGATGGCTCATCTCCGGGCGGTGGATGTGAGAATCCTGCAACAACTCGTGGCACTGCATGAAGGCATTGAAGCAGCAAAGTGGCTTATGGAAGAGCGTGGCATGCTCACCAGCCACTGCAGCAGCCTGACGGGCAGTCAGTACAGTCTGGGAGGCAGCTGGAGCAGCCTACATGAGCCCCACGACAAGCTGGACAACATCTCCATCGGCAGCTATCTGGACACGCTGGCTGATGATCTGGATGAATACTGCACCTCCAGCGGGGCTGAGTCTGTGCTCTGCACCGCACCTTTGTGCACAGATAACTCCAAATcctcacaggtgaaacccaatGGCCCTAAAGAGGATGTGAAACCTTCCAACCATGACGTGAGACCTTCCAACCATGACTCTAACCATGAAGAAGCTAGTAAGAGTAATGCAGCTAATACTGGAGTCCTGGATAGTGCAGTTAAGCAAGACAAAGACTCCCCCAAGGCTCTTGCAGTTGAGAAGCTGGCGAAGACCCTGAGCCCTAAGGGTAAGATTTACAAGAATGGCAAGGTGGAGCTGGAAAGCTGCAAAATGAGTGGCAAAGTGCACTTGGAGTACGATGCACACTGGCGCTGGGTGCAGTCACAGGATGATGTGACATTTTTGTGAAGGTTTAAAAGATGCAACCAAAGTTGCTGGTTATATTTTGGACTTCAGAGCCTTATTGGACAGATTGATTTTACTCTGGGATTGGTTCATAAGAACATCCTCACACACTTTTGACTGACTGTCGAGCTTAAATGAATTCAGATCTAGAGATATGATGTCAAAGATCAAATGAATTCAGATCTAGAGATATGATGTCAAAGATCCCAAGGGGCCAAAGCTTAGAAAGCATGAACTTTATATTTGTCTTTCCATTCATTTATCTGTACAGATGTTTATCTATTAAAACTATTTTGCTCAGTGATTCCCAGCCCTGGTGCTAGAGTAACTTGCCCTGCACAATTTAGTGCTTTACGTCTTCTAACACTCCCACATTGACTCAGGAAGGGCCTGTTAATTATCTGATTAGTAGGAGGAGTGTTATGGCAGGAAAACTAGCGAAATGGAGGCAAGGAAAACACCGGGACTAGAGCTGGGAATTGCTGGTGCAGTATTTTTTATGTGACTGTGGAATCTGGTTTATCAGTTATTTCTCCAGTtcctttaaatatttctttgcaGAGATGTGGTTGATAATCTCAAGCATTTTCTGTGTATCAGTGTTAATTATTagattttccttttctttaacTGTGCAAGTTGACCAATACAAAatctgacatttattttaaagtgctttAGTTAAAATAGCCAATGATCactttaagaaaataataaattcttatTTTCATGTAAACTCTGAAGGAGCCAAAAGACTGAGATATGAATAGTGGGTAAGctgacatttattaaatattttagagagGACCAAAATTTTTAGctataaaaacacatcatagtgatatttttctatttattctaAAGTTGAAAGTTCCATAAATATAGTATAATCTGTACAATGTGTCACTGTTTTTCAGTTGATATCACATTTGCAGTATAAAATTAATGCACATTAATGATTGTTGCAACAGCACACTGTGGCAGACCCATGCTCAGACTATCAGGTTCAAGGTTGGAATATGCAAACAGAAAAGACAATGAAATCGAATTATTTTAGTGATAACTGTTTAATAATTGAAGTTAGGGACTAAAGGGAACTTTAGGGAACTTACTGTAATCTAACATGGAAGGTCTTTAATATTGTTGTATTGGTAGTTCAGAATTGACTCATATGTAAAGACAGCAACAAAAAGTCAAAGAGCAAATTTTATTTGGATAGCTGTGAGCAATCAGGATGATTTCTGTGTGAACATTAAACACAGAATCTGCACCTAAGTGCAAATGCTTGTGCaatatgattaaatatataaaatatatatagttaatttaaatatatatgtaattaaataattcagatAAATGTGGCCTGTTGTTTTACGCTAGATCATGCAAAAGCATTTTAACCAACTCTTATGCAACCATGTAGTAGTATAGAGGCACATTAATGTAGTGAGATCTTCATGATTGTGAATGCAGGGAACTGAATGCATGAAAATGTGTGGGTTTGTGTATTTGAGAGGTCACACTCTGCTGTGGGGTCTGTATTAAAgaaatagtaatattaataattaaaaaaacacatgcagtgAATTAAgtaaatgcagtttttatatTAGTGTTAACCCATATTAGTGCCACTGGATGTGGTTTTGCCTGTTTTACTTATGCAAAGACAACTGCACTGCTGTAACAGTTTTATGTAATGAAGCTATAAATGCTATTTGACATTTGATGTGTTACCTAATAAATGGTGATGTATGATCCAAGTCAGTTACTTAAAGGTAACTTAAAAGTTTGGGGTTGTGAACATGGATTTCTGAAAAGCTGTGAAATTGTGTTCTCTGGTGTATTAAGGACACACGTGGGAGAGTTAATGTTCCCAATGCACTCAGAGCAGCTCTTTTTctcccacacacccacactgaaTGCTAATAATGGCTGTGCTTCTAGGAACTGTTTCCATGACTACTGTTAGTGTgggatgtgtatgagtgtgtgtgtgtgtgtgtgtgcatgactgTTCAGTGACCATCAGCATGCACAAAGACAATTGCACAAGAGGCAGAGAGGCAGAGGATGTGATGACGTAAATAAGTGAAATGTAGAGGGTTGAGTTTTAAGATAGAGAAGGTAAGTAAATGCCAGAAGAAGAAATTATATGAGTTGAACTGAATGAAAGGAGAGTTTTGGTTGCTAATTTCGTGCTAATCCTCCTCACCAGTATATTAGGTTTATTTGGCATCTGACTGGGCTGATAAACACAGTAATTTTGTAAGTGGATCATGTAATCTGATGTTTCTGACCGCTcttctcacgcacacacacctctacattCTAATTATGGTTTACGACATTTTGATTGGTTCAGTATCGGGTCAGAGTGATAAGATGGTTGGCAAAAAAGTGTGCCTATAATGTTTTGATCTGATTACTGTGGGCTAGCAACACTGCCATTATGCATGTGATTTGCTGTGGCTGGCTCTGACTGTCTCCcacatataaacacatgaaTCTACTCACAAACTATAAATACgcaaaaaaaagtctaaatttgTAGTAATTTATTGGACTAAATCAGCAGCCTGTCCTGAAATGGTGCAGCCTTCGTTTGCCTTGAATTTTTGCAACTGTTCAACTAATGTGTCTCATAGAGTGGGAAGAGATTATTAAATTTGGTACTGGGCAGTATTTTTATGTTGGAGGAGAGAGACACTACAGGTTGGacatcagtggaaaaaaacagaacaaaggTGGCTCTTAGagagcccaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36669 lncRNA downstream 2998 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 306006 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 306869 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 414752 20512732 ~ 20548637 (-) False G30879
TU36444 lncRNA downstream 429268 20512732 ~ 20534121 (-) True G30879
TU36702 lncRNA upstream 84257 21062894 ~ 21065738 (-) True G31094
TU36880 lncRNA upstream 302727 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 405772 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 410840 21389477 ~ 21412173 (-) True G31454
TU37132 lncRNA upstream 553611 21532248 ~ 21532459 (-) True G31481
XM_026935299.2 mRNA downstream 76556 20884525 ~ 20886833 (-) True zgc:153311
XM_034311575.1 mRNA downstream 148569 20683547 ~ 20814820 (-) False lrrc7
XM_034311566.1 mRNA downstream 148569 20683547 ~ 20814820 (-) True lrrc7
XM_026921598.2 mRNA downstream 192978 20683547 ~ 20770411 (-) False lrrc7
XM_026921363.2 mRNA downstream 192978 20683547 ~ 20770411 (-) False lrrc7
XM_026918081.2 mRNA upstream 11048 20989685 ~ 20994441 (-) True ttc4
XM_026918070.2 mRNA upstream 17451 20996088 ~ 20999389 (-) True pars2
XM_026918061.2 mRNA upstream 17451 20996088 ~ 20999388 (-) False pars2
XM_034313472.1 mRNA upstream 39289 21017926 ~ 21084763 (-) False sgip1a
XM_034313464.1 mRNA upstream 39289 21017926 ~ 21084763 (-) False sgip1a
trnap-cgg_1 other downstream 1576876 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1582877 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2146191 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2147059 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2156639 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 485224 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 485224 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 485224 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 485224 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 485224 21463861 ~ 21531428 (-) False raver2

Expression Profile