RNA id: XM_034300687.1


Basic Information

Item Value
RNA id XM_034300687.1
length 3202
RNA type mRNA
GC content 0.38
exon number 11
gene id parp3
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15432270 ~ 15440328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGAAGTTCTGCATGGTCTTAAAGAGTCCATCGCTCTCATGGGTTGATGAAAGAGCATTTGATGCTTACAGAAGTATCCTTTTACACTGGTGCCTCTATGACCATGAGGCAGCAAGGATAAGAAGAAAACATGGCGCCAAAGAGAAAGGCAGCATCTGCCTCCAAAGCAGGTGGAAAGAAGGTAAAAGAGGAGCCTGAAACTCCAGTAAAAGACAAGTTCACCTCTGCTAAAGAAGCTCTGAAGGCCACAGGACCACAGGTTAAGGCCAACCGGAAACCAGACTGTTTATGTCGCCTATCAGATGCTGAGGTTCATGAAGATTATGATTGTATGCTGAACCAGACCAACATTggaaataacaacaacaaattttATGTAATCCAAGTCTTATTGTCAGGAGGACAGTATTATTGCTGGACAAGATGGGGCAGAGTAGGAGAAGCAGGACAGAACAATTTAGCTGGACCTTCAAATGTTGATGCTGCAATTAAGAACTTTGAAAAGAAATtcaaagagaaaacaaagaacaactGGAGCGATCGGGATAACTTTGTCTCTCATGCAGGAAAATACACTCTGATTGAGGTGGAAGGAGACCAGGATGCAGAAGTGATGGTTGATGCTGTAGGTAGCAGACCAGTGACAGTAAAAAAGAACATTCTGCCTTGCACACTGGACGATGCAACTCAAAGACTCATGAAGTTCATCTTCAACAATGACATGTTCAAGGAGGCCATGGAGAGCATGAACCTGGACATTAAGAAGATGCCACTGGGGAAACTGAGTAAGCAGCAGATTGCTAAAGGCTTTGAGGCCTTAGAAGAGATTGAGGAGGcaataaagaagaaaagtaatGAAAGCAAGTTAGCAGAGCTTACTTCTAAGTTCTTCACCATTATTCCACATAACTTTGGCCGCAATAGACCCCCTGTCATCAGAGATGATGTTATTCTTCAGGACAAGAAGGAGATGCTTCTGGTCTTGGCAGATATAGAGATAGCCCAAAGCCTTAAAGCTGAGTCGGAAAAAGCGAAGGAGGAGATGGTGGAGACTGTTCCTCATCCAATAGACCAGGACTACCACTCTCTAAAATGCAACCTCACACTCATGGataaaaaatctaaagaatTTAAGATTATTGAGAAGTATTTAAATGCCACTGGTGAAAGACTCTCCATAGTAGATGTATGGGAAGTGGACAGAGATAAAGAGGCAGAGCGCTTCAGAGACCATGATGCTTTGGGGAACCGGAAGCTTCTGTGGCATGGTACTAACGTGGCTGtagtggcagccattttgaaaagTGGCCTACGCATCATGCCACACTCTGGTGGTCGGGTGGGCAGGGGGATTTACTTTGCCTCAGAAAATTTGAAGTCTGCTGGTTATGTCCGAACATCAAAGAATATTGGCATCATGTTTCTGAATGAAGTTGCTCTGGGCACGGAATGCACCATCACGAGAGATGACCCAAGCTTAAGGAAGGCTCCTGACGGCTATGACAGTGTGGTAGCACGTGGGACACAAGAACCAGATCCCTCAAAAGACGTCGTCATTCACCTGGATGGGAAGAACGTGGTTGTGCCACAAGGGAAAGCCATGAAGCAACCTCAGTATGAAAACAGCAACTTCTACAACAGTGAGTATCTCATTTACAAGGAGAGTCAGTGCCGCATCCGCTACCTGCTGGAGCTCCGCTTCTAGCTTCTGCTGCAAGGGGACTGGCAAAACATACAGAAAACTGCTCCGTTAAAGACACAAGTCTTTAAACTAAAGTTGCTTTTGTGGTACATTCCTAGTTAACCAAAGCCTATCAAGAGTCTGATTTGCTGACATGTTCAGCATAACTTAATTTGACTAAATAATGccctcaataaataaaaatttgttgaTGAGGTTTACTTGAAATTCATGGGGAGGATGTGTGGTGGTactggtaatttttttttttaaatttgctgaAGCCTTTTCaaattacaaacacatttttacatttgacagacattttacttctgattgtttttctgctttttgaaCAAAAGGCAAATTTGGAGTGCCTTCCTTTTATTATAGAATCTGCTTGAATGGTTGTTTAGCCATTACAATTGAATAATGCACCTTCTAAAAATATCCCGTGTGGAACTGAAATTTTTGCAATATATAGAGAAGTTTAGTTAAATTGCGCTgaaatttccatttattttgttAGTCTGTTCTGTATTGGCTTTCTATCCTgactttctttttaatttctttgaaGTTTCAGGTTATATTTGTGCTtgtgttcctgttttttttccttctttttttttttggttaagaTGTTCTTTACCTTTGGTAAGATTTTATGGTAGTAATCTATCCATCAATGCCATCAATGCCAACTGAATCATGTGCAGCAAGAAAGGAAATCTTGAAAAAAATTGGTACTGTTCTATTGCTGTATGAAAGGAAATCTTGCAAGAAAGGAAATCTTGAAAAAAATTGGTACTGTTCTATTGCTgtatgaaaagcaaaaaaaaaaaacatttaaagcatTACTTTGTACTAACTTCAAAGGAGCTACACAGTTGTTTATGAATTTACATTAGTGTTATTTACAAAATCTTTATAAATTGATGACTAAGATTAAATTAATGCTAAGAAAAACAACATAGTAACTGATCACATAGTTTGCTGACTTTTCAAAGTGGTGATCTGCCTGGGTCTCATTCAAAATCGTACAAAAGGTACATactcctttaaaataaaatcaaaaacagCACCCAGGATTCCACTTTCTTATTTCATGTGGcttgtttaaaattttatgaGGTTGTATTTGTCCATTATTCTTTCTGTGTAGTactttataatacattatgtattaattataGAGATAAGTAACTACAATTCTATTCTTTCTGTGTAGTactttataatacattatgtattaattataGAGATAAGTAACTACAATGTTTTGATTTGTGTGTACTCCAAATTGAAGTTTATTATGCATCTCTGCATATTGTACTATGAACATAACATGGATAATGTTATCTCCAATGCTTGCTTGAAGTGCAATATATtgcattgtccatctgcactttgttttaataattgatTTTGAAGGAATGTCGAGCTCTCAAGAGTGCCTTGGGTAAACTTCTTTATGTGGTGGCTCAACAGGtggaaaataaacaattgtgtgcttaaa

Function

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32702 lncRNA upstream 154178 15276640 ~ 15278716 (+) True G27733
TU32642 lncRNA upstream 325720 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 552470 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 582773 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 640272 14792411 ~ 14792622 (+) True G27450
TU32738 lncRNA downstream 31204 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 49208 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 174696 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 334048 15774376 ~ 15775849 (+) True G28040
TU33047 lncRNA downstream 336570 15776898 ~ 15778600 (+) True G28041
XM_026929918.2 mRNA upstream 5694 15387228 ~ 15427200 (+) True grm2a
XM_026920001.2 mRNA upstream 48800 15308839 ~ 15384094 (+) True tex264a
XM_034313505.1 mRNA upstream 128400 15278840 ~ 15304494 (+) False fancd2
XM_026923867.2 mRNA downstream 892 15441220 ~ 15446170 (+) True gpr61l
XM_026919013.2 mRNA downstream 11106 15451434 ~ 15453127 (+) True LOC113529636
XM_026924038.2 mRNA downstream 16318 15456646 ~ 15461002 (+) True cav3
XM_026936877.2 mRNA downstream 294516 15734844 ~ 15749493 (+) True hemk1
XM_026927452.2 mRNA downstream 348298 15788626 ~ 15790439 (+) True LOC113534559
XR_004580083.1 other upstream 138540 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 241238 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 1931598 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 1933529 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 740990 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3334442 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3377074 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 4094113 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4669802 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile