RNA id: XM_026928919.2


Basic Information

Item Value
RNA id XM_026928919.2
length 3200
RNA type mRNA
GC content 0.47
exon number 15
gene id stau1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12260322 ~ 12269807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTGATGTAATTTCCGGGAGTGGCCGGACCATTAGGCGATTCTCTTTAGTGTTTGCCCTGTCTACTTTCTCTGCTCTACCTCACCTATATTTAATTCAAAACCCCCACTATATCACTCCCCTAAAAATTGGACGCTAATGTTAACGTGCTTTCTCATGGAGTAATTTACCACCGGGACTAAGTAAGACGAGGCAGAGCTTTGCAGTCTTCTACTTTTCTAAAACACCCACTCTCCTTTTACAAAAGCTCATCATTGTCCTGTGAGAATCCTGTCCCAGACTGCAAAGCATCTTCCTAACCATCAGCCAGAATGTCCCAGCTTCAGTTCCAGTCTCCTGGCAGCCCTGTACCCAGTTCTGCTCCTTTACAGCTAGCACAGCCCCAACCTGGCTTCAGCATTCCTTCTGCTACTGGCTCCTTACCTTCAGAAAGCGCCAGTCACCCGCTGCGAAGCTCCGCCCTGCCCTCCGCCTCGGCTACACCCTTCTGCAACCCTACAGCTTCTAACATGGCAAACCCTAAAGAGAAGACCCCCATGTGTTTGGTGAATGAGTTAGCCCGTTACAATAAGATCCAGCCTGAGTACAAGCTACTCAGTGAGCAAGGACCAGCCCATTCCAAAATATTTACTGTGCAGTTGACTCTGGGGGAGCAGCACTGGGATGCAGAGGGCACCAGTATAAAGAAAGCTCAGCACTCTGCAGCAGCCTGTGCTCTCGGCCAGACCACACTGCCCAAACCCAATAACAGAATCCCACGACACCAAGGCAGGAACCCAGGTGGGTTCTACAGAGGCCCAGAGTCAGATAGCATGACGCACACTGTGGAGCTGAATGCACTTTGCATGAAGTTGGGGAAGAAGCCAATCTATAAACTTATAGACCCATACCAAGGCATGAGACCCACATTCAACTACAATATCAGAGCACCGGGGCCTTATGCTCGCTCCATGCAACAGTATTACTACCCGTTTCCTCCGGTGGCACCGGTGCTGTATCATATGGAGCTATCCATTGGAGGGCAGCAGTTCCATGGAAAGGGCCGCACACGCCAGGCGGCTAAACATGATGCTGCTGCTAAAGCTATCAAATCACTGCAGAAAGAGCCACTGTTACAGCAGCTAGTTGAAATGAAAAAAGAATCAGAAGAAGAAAACCTCAACAAATCTGAGATCAGCCAAGTGTTTGAGATTGCACTGAAGCGGAACATGCCTGTGAACTTTGAGGTGCTGAAAGAGGCAGGACCACCTCATATGAAGAGCTTTGTGGTGAAAGTGACTGTGGGAGAGTTCACTGGAGAAGGGGAGGGCAAGAGCAAGAAGATCGCCAAGAAACTAGCTGCCATTGCTGTTCTGGAGGAGCTGCGGAAGTTGCCACAACTACCAGTCATGGACAAGATGCCACCTcgtattaaaaagaaaaccaaatcCATTATAAAGctgcagaccagtccaGAATATGGGCAAGGAATAAACCCAATCAGCAGACTGGCTCAGATCCAGCAGGctaagaaagagaaagagcctGAGTACATCCTAGTAACTGAGAGAGGACTGCCTAGACGTAGGGAGTTTGTCATGCAGGTGTCAGTCACTGGTCAGACTGCAGAAGGTATGGGTCCAAGTAAAAAGGTGGCCAAGAGGAATGCAGCAGAGAAGATGCTGGAGCTCTTGGGATTTAAAGTGCCTCAACCTCAGCCTCCCAAACCAGCACTGAAAACAGAGGAGAAGCCTCCTCTGAAGAAACCTGGAGATGGACGTAAAGTGACCTTTTTTGAGCCAGGCTCTGTGGAGGAGGGGGGACTGGTCTCAAAGGAGGAGGATTTCCGTGTGCCCTTCCTCAGCCATCAGCAGCTTCCTGCTGGCATTCTACCCATGGTGCCTGAGGTGGCACAAGCGGTTGGTGCCAGCCAGGGACCCCATGCCAAGGACTATGGCCGCCCCAACCAGGCCAAGGCCTCACTGACAGCAACAATTGCCAACGAGCTGCTGTACGCTGGTACTTCCCCCACAGCTGAAGGCATACTGAAGGGAAGTAAAAACCTAGCAATGAGACCCCACGGACCCTTCACTAGACCATCTGAACAGCTTGGATACCTGGCCACTGTACAAGGCCTACAGGTAGAATATAAGGACTTtccaaaaaacaacaagaacGAATTTGTGTCTCTCATCAACTGCTCTTCTCAGCCACCTCTCATAAGCCATGGTATCGGGAAGGACGTGGAGTCCTGTCACGACATGGCTGCATTCAACATATTGAAGCTGCTCTCAGAGTTGGACCAACAGTCCAGTGAACGGCCAGCCAACGGACCAATTTCTGGGTGCGGCAAACAAGATCTTGAAGGTGACGCGTTGCTCAAACCGGCTAACTCAAGCACCATGGGAAAAACTCTGGACGGCGCTGTGTAGAATATCTGATTACTGATGGTGGTGCCATTTCGGAAACACTAGAGAAAAGACAGGGGCAGAGTTCTAATTGGCTGCTTTCAAAAGCCTTGTTCACACTGAATTTTAACCTTTCTAAAGTGTTGCAGTTTCACAGTTAAACAAGATTAACTGAGAGATTTCTCCTACTTGATGTTTAATTGTAATCATAGTTGTTTTGCTTCATCATATCCagtggtgctttttttttttttttttttttttttttttttgattgcaAAAATGATGTGAACTGTAACTTGAATAGAcagctttttttctctgttaaaagTAAGCCATTCTAATGtcgtattttcttttttttttttttttaatgcttcatTATGAGCATTATAGAGGATGTGCAGCTATTGTGATGTGCAGTATGAAATGCGCTTAGGAGGATATAATGAAGCTAAGGCAAGAGCTCTCTGTCATATTGGATTTTCTCCAGTGCTTTTAAGGTGGCAACCATAAAAAGCATTAATTTGCATTTCCATGTAGGACTGGGAAAGTATTTTCTTAATCCCTGTTTGATGTATGGTGGTGTCCTGtgatgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaaggtTGTTAGTGTCCAGTTGTTGTGGTTAAAGCACGGCTCATAACCCACTCCTACAGTCAAAATCATGCACCCTCTCCCTCAGTGTAAACCCGTTTTTCTGCCAGTTGgttcccattttttttcccctcatggAATGCAAGTAAAATTCTATTCTAAAA

Function

GO:

id name namespace
GO:0007281 germ cell development biological_process
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30282 lncRNA upstream 222308 11946093 ~ 12038014 (+) True G25624
XR_003403381.2 lncRNA upstream 285333 11957228 ~ 11974989 (+) False LOC113533008
XR_003403384.2 lncRNA upstream 285333 11957253 ~ 11974989 (+) True LOC113533008
XR_003403548.2 lncRNA upstream 454863 11803590 ~ 11805459 (+) True LOC113534932
TU30103 lncRNA upstream 468197 11732424 ~ 11792125 (+) True G25452
TU30578 lncRNA downstream 5045 12274852 ~ 12275052 (+) True G25872
TU30588 lncRNA downstream 23116 12292923 ~ 12293129 (+) True G25882
TU30592 lncRNA downstream 25804 12295611 ~ 12296042 (+) True G25886
XR_004580102.1 lncRNA downstream 33117 12302924 ~ 12309500 (+) True LOC117599716
TU30616 lncRNA downstream 138514 12408321 ~ 12408523 (+) True G25907
XM_026928903.2 mRNA upstream 1132 12246651 ~ 12259190 (+) True pbrm1l
XM_026911822.2 mRNA upstream 46665 12204441 ~ 12213657 (+) True si:dkeyp-67f1.2
XM_034300373.1 mRNA upstream 46665 12204441 ~ 12213657 (+) False si:dkeyp-67f1.2
XM_026911131.2 mRNA upstream 57150 12183101 ~ 12203172 (+) False cfap20dc
XM_026926200.2 mRNA downstream 94318 12364125 ~ 12385687 (+) True LOC113533827
XM_026926400.2 mRNA downstream 124258 12394065 ~ 12402681 (+) True LOC113533905
XM_026918394.2 mRNA downstream 152348 12422155 ~ 12430457 (+) False tespa1
XM_026918367.2 mRNA downstream 152349 12422156 ~ 12432137 (+) True tespa1
XM_026918386.2 mRNA downstream 152349 12422156 ~ 12432137 (+) False tespa1
TU30526 other upstream 53065 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1351750 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1505700 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2061867 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 2353151 9895245 ~ 9907171 (+) False LOC113530691
TU30617 other downstream 256363 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 996220 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1226049 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1226050 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 1226050 13495857 ~ 13499365 (+) False tshba