RNA id: XM_034313760.1


Basic Information

Item Value
RNA id XM_034313760.1
length 1987
RNA type mRNA
GC content 0.45
exon number 10
gene id thumpd3
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15039857 ~ 15050797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTAAAGCACGTTGTAGCCGGTAGACTCGGTGACTGAGAGACAtggcagaggtgtgtgtggaagagggaGAGGAGGTGCTCCAGCCCCTCACTGTCACTGTAGGAGCTACTGTTCCTACAGGCTTTGAATACACTGCAGCTGAGGAGGTGCAGGAGAAAATAGGAGCCAGTGCCAGAGTTAGCAAAGACCGAGGTAGAATTTATTTCGAAATAACTACGGATCAACTGCATAAGGTGCACCATTTAAAGTCTGTGGACAATCTGTTTGTTGTGGTTAAACATTATGACAATTATCAGTTCAAAGAAACAAAGGAAGAAGCTTTATTAGACCTGCAGCAGCTTGCTCCTGTGTTGCCCTGGAACAGTGCCTTGGAGGTCTGGAAAATGAACAACTCtctgaagaagaagaggagccGCAGGAGAGGAGCCGCGACTCCTAAACCGAAGCCTAGCGATGCATCCGAACCTGAGAAACCCCAAACTGAGCCTGATGCAGCACAGCTAAAAGAGAAGCCTGGAAATGCCTGTCCTGAGCAGGAGCCCAGTCCTGAAGGAGAGCAGGACTCCGATGTTCAGGAGACAGAGGCTAAGCCTTTAAAATTCCGTGTGACTTGTAATAGAGCCGGAGACAAGCACAGCTTCACTTCAAATGACGCAGCGAGGGACTTTGGTGGTGCCGTGCAAGAGTTCTTTCAATGGAAGGCAGACATGACCAGGTTTGATGTGGAAGTGCTGTTGAATATCCACAACAATGAGTTGGTGATTGGCATTGCTCTTACAGAGGAGAGTCTGCACAGGAGAAACATTACTCACTTTGGCCCCACCACTCTGCGCTCCACCCTGGCTTATGGAATGCTAAGACTTTGCAAACCACAGATATCAGATGTCATAGTAGACCCCATGTGTGGCAGTGGAGCCATACCTTTAGAGGGAGTCATCGAGTGGTCACATTCATTCTTCCTCTCTGGAGACAACAATGACATGGCCATCAGTCGAACAGTTAATAACATCAACCACATTGTAAAGAAAAAGCAAGATGGTGGCAGCACTTCTCCAGGTTTAGCTATAGACACTGCACAGTGGGACTTGTGCCGTTTACCTTTGAGGACTAGTTCTGTGGACATCATTACCACTGACATGCCCTTTGGAAAGAGAATGGGCTCCAGGAAGAAGAACTGGGATCTGTATCCTTCTTGTCTTCGAGAAATGGCACGGGTCTGCAGGCCAGGCACAGGAAGGGCTGTATTGCTGACCCAGGACAAAAAATGCTTCACTAAGGCACTATCCCGAATGGGAGGGCTGTGGAGGAAATCGCACACTGTTTGGGTAAACGTAGGAGGGTTGCATGCTGGAGTTTTTGTGCTGCGCCGCACCGCAGCAGTTTTTGGTACCACTCCAGAAGATACAAGAGAGCCTCATATGAGATGTGAGTCTCAAGAGGTCAACATGGAGGAGAAGGTTCAGTCAGCAAGATCTGAATGAGTTATTGTTCATGAGTTATTGAATGAGAATGCATATGATACCTGTAAAAGCTTTACCTCATCACTTTGGTCATATTCAGTTAGTTCTGTTAGAGTACAATGTTCTTTTCACAGATCAGCAACACGGGATATCTTAGAAtgctttgtttgtggaaatatGCATCTATAGAAATTTACATTACATGTTGCTCTCAGAATGAAGTGCCAGTCAATAAGTTCAATAAATGTGGAATGATTTCCTTCCAACTTCAAACATTTGTGTGTTGATGCGCCACTTTTGACCTCAATGTCCCTGCAGCCATTATAGGAACTGGTCTTAGGTTgcaaaatcatttctttttccagaCTCACAAAATAATGTTTCCCCCAAGGTTCTTGAGCGGTACATGACATCATTCTTGGAAGACTTTTACTCCCCACAAGACACGTCATCATTTGGTTCTAGTTGGAGACTGGAAACATTGACTCCAAAATTACCAAAaattggccaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577376.1 lncRNA upstream 161261 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 191564 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 249063 14792411 ~ 14792622 (+) True G27450
TU32212 lncRNA upstream 437139 14562217 ~ 14604546 (+) True G27311
TU32208 lncRNA upstream 486220 14555251 ~ 14555465 (+) True G27309
TU32642 lncRNA downstream 56160 15106957 ~ 15107174 (+) True G27679
TU32702 lncRNA downstream 225843 15276640 ~ 15278716 (+) True G27733
TU32738 lncRNA downstream 420735 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 438739 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 564227 15615024 ~ 15616714 (+) True G27979
XM_026920903.2 mRNA upstream 252618 14775843 ~ 14789067 (+) True tgm2b
XM_026920911.2 mRNA upstream 252618 14781158 ~ 14789067 (+) False tgm2b
XM_034314476.1 mRNA upstream 279758 14727157 ~ 14761927 (+) False quo
XM_026931131.2 mRNA downstream 1511 15052308 ~ 15063316 (+) True LOC113536922
XM_026911392.2 mRNA downstream 14098 15064895 ~ 15104302 (+) True LOC113524957
XM_026911575.2 mRNA downstream 58205 15109002 ~ 15117087 (+) True rae1
XM_026911506.2 mRNA downstream 58205 15109002 ~ 15116176 (+) False rae1
XM_026911681.2 mRNA downstream 68694 15119491 ~ 15128259 (+) True rbm38
XR_004577012.1 other upstream 1540389 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1542320 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 140787 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 228030 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1130521 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3723973 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3766605 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile