RNA id: XM_026929254.2


Basic Information

Item Value
RNA id XM_026929254.2
length 2156
RNA type mRNA
GC content 0.39
exon number 11
gene id nprl2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15033446 ~ 15039603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ataccGAACGGAGAGAATACTGGACAACAATCCGGCGATATTGTAGTCGGCTTCACACTGACAATCATGGGCACTAACAAGCGAAttgagtgtgtattttttagTGAATTTCATCCAACTCTTGGACCTAAAATCACCTATCAGgTTCCTGAAGAATATATATCAAGGGAGTTGTTTGATACAGTGCAAGTGTACATTATCACCAAACCTGAGCTACAGAATAAGCTCATTACAGTGACTGCAATGGATAAGAAGCTAATTGGATGTCCAGTGTGCATAGAGCATAAAAAATACAGTCGCAACGCCTTACTCTTCAACTTAGGTCTTGTGTGTGATGCTCAGACGAAGACATGTGCCCTTGAGCCCATAGTGAAGAAACTTTCACAATACCTTACAACTCTGGAGCTGGAGAGTGGCTTTATTTCAAATGAGGAGAGTAAACAGAAGCTGTTGCCCATCATGTCTACATTACTTGAGGAGCTCAACGCAACAGGAGCCTGTACTCTTCCTATTGATGAGTCAAATACAATTCACCTGAAGCTGATTGAGCAGAGGAAAGATCCCATCATTGTTCAGGAGTATGATGTTCCAGTCTTCACTCAAACTAAGGAACGCTATATTAAGTCTCAGTGGGATCTCACCACACAGCAGATTCTGCCCTACATCGATGGATATCGACACATACAGAAGATTTCCGCTGAGGCTGATGTTGAGTTGAACTTAGTACGAATCGCCATTCAGAACTTACTGTATTATGGAGTTGTAACACTAGTGTCAATATTTCAGTATTCTAATGTTTACTGCCCAACACCTAAAGTCCAGAGCCTGATAGATGACAAAGCTGTTCAGGAAGAATGTCTGCATTATGTCAGTAAACCTGGACAGCGAGTGAGCCTCCGAGATGTTTTCCAGCTTTATTGTGGTTTGACTCCAGGAACTACAGTGCGTGACCTGTGTTCCCGCTATGCTCAGCAACTACAAAGGGTAGATGAGAGAAAGCTGATCCAGTTTGGTTTAATGAAGGGCCTGATTCGCCGGTTGCAGAAATATCCTGTTAAAGTTGTTCGAGATGAGAGGAGTCGTCCTCCAAAACTTTATACTGGTTGCCACAGTTATGATGAGATCTGCTGCAAAACTGGAATGAGTTACAAGGAGCTGGATGAGCGATTAGAAAATGACCCCAATATTATCATCTGCTGGAAGTGATGTCATATTAAATATGGATTTGTGGATTCATTTATCTGATGAGGTAGACCAGCATATGCAGTTGAGCTGTAAGGCAGTCGGTGGGACCACAGCCTGAGACGCATAAGCAAGTGTGTCAAGTGGCCCATCCTCACCCACGGCCTGACCCAAAAACCAAGGACATacacagtcagctccagaattattggcacccttggaaAAGTTGGGTAAAAAAGgttatggggggaaaaatgtatttgtcattaattagcttaatctcgCACCgaaatatgagagaaatctaatctttaatataaacagtgttTAACAAAACCACAACTATTGGTAACCATAGaactcatttttaaagtttacCCGAGTGTTTAGGAGCTAAATTTTTAACTGTTTCTCTAGAAACTTACTGTACCTTGCTTAACTTTTACTATATCTACAATAAGTAGATATTGTAGTTGCTCTCTGGATTCTTATATATACATTCCtatctttccattttctttattCCACCTTCTTGATAGGAAATTGTTGCTCTCATTTCTAACCTTGCTGTTCAGCACAGAAACTGAAGTTTTGGTCTCCCCTAGGATCTAGAAACTGAGATCGCAAAACATTCATCCTGTGACcagttttctgactttttaagGTTTGATTTACATGCATGTGTGAAGCCATTAACTTGAATTTTCTGGAAAAGGCAACCTGGTTTTGGGCTAAAATATTCTGGTACTTAGAATGAAGAATATATGATATCATATGTTTTTATAAGTGCTGAAATGCGCAGTTGCATTTCAGCACTTGCGTGTACAAAAAAGTCTACAAATGTGtggaaatatgttaaataaatatgtttggACAACATATTAGCGGttgtaaatgaaatttttttaaatgggtaAGTTGATTTTGCTCAAGTTATTTTCAACCGGTAACAGTAAAATTATGGACATTTAACT

Function

GO: NA

KEGG:

id description
K20405 NPRL2; nitrogen permease regulator 2-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32551 lncRNA downstream 22785 15010325 ~ 15010661 (-) True G27600
TU32441 lncRNA downstream 148959 14884255 ~ 14884487 (-) True G27502
TU32421 lncRNA downstream 173200 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 242805 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 540607 14492637 ~ 14492839 (-) True G27303
TU32615 lncRNA upstream 25282 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 90400 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 105102 15144705 ~ 15146155 (-) True G27705
TU32670 lncRNA upstream 111209 15150812 ~ 15151049 (-) True G27706
TU32777 lncRNA upstream 204712 15244315 ~ 15246353 (-) True G27801
XM_026929243.2 mRNA downstream 884 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 945 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 1801 15025127 ~ 15031645 (-) False zmynd10
XM_026929263.2 mRNA downstream 8913 15010827 ~ 15024533 (-) True LOC113535748
XM_026929270.2 mRNA downstream 17176 15010827 ~ 15016270 (-) False LOC113535748
XM_026917581.2 mRNA upstream 237302 15276905 ~ 15278713 (-) True gpx1b
XM_034314036.1 mRNA upstream 422470 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 422470 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 422470 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 466041 15505644 ~ 15568428 (-) False rad18
XR_003403256.2 other downstream 157456 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 157456 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 641095 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 975001 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1126257 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 257706 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 417032 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 422347 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2233352 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2474109 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile