RNA id: XM_026929918.2


Basic Information

Item Value
RNA id XM_026929918.2
length 4237
RNA type mRNA
GC content 0.48
exon number 6
gene id grm2a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15387228 ~ 15427200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCGCGCCCTTTTTTTGCATCTCCATCAGCGCCATGTCCAAACTTGTCCTCTGTCCCAGTGTGCGACGGGAATGATCTCCCGGCGAATTTCTGACGAACCAGCCTCAATGTGCTAATGCCTGAGCTGCTAACAAAACCCAGGCGCTCTGACCCGCGGCTCAGAGAGAAGCAGTGAGGAAGAGTGAGCCGCATCAGTCTGAGCGCGCGCTCTTCCACTGGAGCACTCAACATTTCAGCACTTAAATGTCAGGTAAACCATACGACACCAAGTCAGCACGAGAGACTGTGTGGATATGAGCGCTGTTTTATTAGACTTATAGATTCACATCATTATCAGTGGGGTCGGGAGTCGTGCAGAGTGTTTGCGCGCGCACTCAGGCGTCCTCTCCTCCTCGGCGCGCGCAAAGATGCGCTCCTGTTCCGAATCATCAGAGCTTATTCTCCAGAGGTAGATTCAACATTTCTCATAGTTCTCTTTCTGTCTAGAGTATTTGAGCAGGCTGTCAAAGTTGAGTAATATGCCTTTGGAATAGCTTAGATCTGGGACGTTCACGCGCTCGACGTGTTAATCAATAGTATTCCTCGAAGCTCTTGCGTGAAACTCGTGCGTGAACACAGCAGCGCTTCACACAGGAGTGAGGAGagaggagtgaggagagaggagtgaagagtgaggagagaggagtgaggagagaggagagagggactTGTTGTTGACCGAGTGGCGGAATCGCGGTTCAGCACCGTGGACAGCTCCACGCGCACATTTCCATACCCATCCTTCCCACCGGAACCAGCTCCATGCGCGAGCCTGAAGCTGAGCATCACTGAGGagcagcaggacacacacacacactcacacacacacacagagcccatCGCCCTGAAAACAACCTCTTCGAGATCTCCCCATGTGACACACGCATCAGACTCAGACAGCCACACATTCAATGAGCTGAGTTTGGCATTGATGCTGGAGCTCACCTGTGCCTGATCACAAAGATAGCATCTTCCAGCACTGCTCTACTTGCTGGACagagagattaaacacagaaaaaagcaGAGAATCCTGGTCTGAATTTGTCCACAATGGCTGGGAGGTTCCTTTGCCTCCGAGTTCAAGGACATTCCTGGCCACTCCatttcctcctcctgctgctgcttgtGGCTAGGAGGCCGCAGGCGCTCGAAGTATCTGGCTACAGCACTGACACCACCAAGAAGGAAATCATCATAGAGGGAGATCTGGTGATCGGAGGACTCTTTCCAGTACATCAGAAGGGTGAAGGAGCAGAGGACTGTGGTCGCATCAATGCCCAAAGAGGGATACAGAGACTGGAGGCCATGTTGCTCGCACTAGATGAGATCAATAGAGATAATCGGATCTTGCCCGGTGTCACACTGGGTGCTCACATTCTGGACACATGTTCAAAGGACACCTATGCATTGGAGCAGTCGCTGGAATTTGTGCGGGCTGTTCTGACCAAGGTGGATGACAGTGAATACACATGCCCAGATGGATCCTATGCCATTCATGACGATGTTCCCCTTGCCATCTCTGGAGTCATTGGTGGGTCCTACAGCGATGTGTCCATACAGGTGGCCAACCTTTTGCGACTTTTCCAGATCCCCCAGATTAGCTATGCCTCAACAAGTGCTAAGCTCAGTGATAAGTCCCGCTATGACTACTTTGCCCGTACGGTTCCCCCAGACTTCTATCAAGCCAAGGCCATGGCTGAAATCCTGCGCTACTTCAACTGGACTTATGtctccactgtagcctcagaggGTGACTATGGAGAAACTGGCATTGATGCTTTTCAGCAGGAGGCCAGAGCCTTGCAAATCTGCATTGCTACATCTGCAAAGGTTAGCCGCTCAATGGACCGCTACAGTTACGAAGGAGTGATCAGGTCTCTGTTACAGAAGTCCAATGCTAAGGTTGTGATCCTCTTTACTCGAAGTGAAGATGCCAGGGAGCTTTTGGTTGCAGCAAACCGCATGAATGTGTCCTTTATCTGGGTGGCCAGTGACGGCTGGGGGGCACAGGAGAGTGTGGTGAAAGGAAGTGAGTCAGTGGCAGAAGGAGCTTTCACCATTGAACTTGCTTCATATCCAATCCACAAATTTGCTGAGTACTTCACAAATCTAAATCCTTACAACAACACTCGCAATCCCTGGTTTCGAGAGTTCTGGGAGCACCAGTTCCAATGTAGCCTGCACGAAATTAACTGTGGGAAGCATTCGCTCCGAGATGGCAAGTTTGAGCAAGAATCCAAGATCATGTTTGTAGTGAATGCTGTGTTTGCAATGGCCCATGCACTGCACAACATGAGACAAGCACTATGTCTAAACAACACTAAAATCTGCAGTGCCATGAAACCAGTAAATGGAAAGAAGTTGTATAAAGATTATATCTTGAAGACAAAGTTTGATGCTCCATTCCGTCCAGCTGACACAGAGAACATTGTTCGCTTTGATGCTTATGGAGACAGTCTGGGTCGGTACAACATCTTCCACTACCACATAGAGAATGGCACATATGTTTACCGTAAAGTTGGCTTTTGGGCCCAGAGTTTGAACCTAGATACAAATCTGATCCCTTGGGATAACCAAGTAATACCTACCTCGCAGTGTAGTGATCCCTGCAGGATGAATGAGATTAAGAGCATGCAGCCTGGTGATGTCTGCTGTTGGATCTGCATCCCCTGCCAGCCCTACCAGTATCTCATGGATGAATTCACTTGTGCAGAATGCAGCTTTGGCCAATGGCCAATGGCCAACCTGACTGGCTGTTATGACTTGCCTGAGGAGTACATCCACTGGGAGGATGCCTGGGCCATTGGACCAGTCACCATTGCCTGTTTGGGGATACTGTGCACACTCTTTGTGATTGGTCTCTTCTTAAAGAACAATGAGACACCTGTAGTTAAAGCTAGTGGACGAGAACTTTCCTATATTTTACTCCTGGGTGTGCTCCTCTGTTACTGCATAACTTTTATCTACATTGCCAAACCTTCAGTAGTAGTGTGTACATTACGTCGTCTTGGGCTCGGTACCTCCTTTGCAGTTTGCTACTCAGCACTTCTGACTAAGACCAACCGCATTGCCCGTATCTTCAATGGTGTCAAAGATGGTGCACAAAGGCCAAGGTTTATTAGTCCAGCTTCACAGGTAGCTATTTGTGCTGCCCTCATTTCCTGTCAGCTGTTAGTGGTGATGGTCTGGCTCTTGGTAGAGACACCAGGTGTAAGGAAAGAGGTCAGTCCTGAGAGAAGAGACATAGTCAGGTTGAAATGCAACAGCAAGGACTCCAGCATGCTAATTTCACTGACCTATAACTGTGTCCTCATTATCCTCTGCACCTTCTACGCCTTCAAGACCAGAAAGTGCCCAGAGAACTTCAATGAGGCAAAGTTTATTGGTTTCACTATGTATACCACCTGCATCATCTGGCTGGCTTTCCAGCCCATCTTCTATGTCACAGCCAGTGACTATAGGGTTCAGACCACCACAATGTGCATCTCAGTGAGTCTGAGTGGCTCAGTGGTGCTGGGTTGCCTTTTTGCTCCTAAGATCCACATAATCCTGTTCCAGCCACAGAAGAATGTCACCACCAGTCTCAGGGTGGCCACCACTCGCTTCAGCGTGACCACGGGCCCCGGCTCCAGCTTCTCTCAAGCATCCAACATTGTGCCAACAGTGTGTAATGGAAGAGAAGTAGTGGACTCAACAACATCATCTCTCTAAAAGATGAGCTCTATCCATCTGCCAAATGTGGTATACAGATTAATTTTATCACTAGACAGTAAAACGTGTTTGCTGATATTAAGGAGGCCCCTCACAGTAAGGAGTGGCACTTATTTCATTTTCAACGTGCTGTGAAAAAAATCCCCTCCCCTTGCTCACTTTCTCTTGTTCTTTCTTGCTCATATTCACTCTctcttgcttcttcttcttcttcttcttcttcttctctctctctctctctctctctcctctctttctctttgaaaCTAGTTAGAAAATAATAATGGGATGCCAGCGGAAGCTCTGTATACCACTActttttatagaaaatataataaagtattatttaaGACATGGAGTAAAATGATAGTGAATCTGTTCAATGTATCATATACAGGATGTTTTTAATTGTAGATTTTTGGTGATTCAGGTTTGTTGTTCCttgtaattaatgtaaataaaacgtGTTTTTATGAATATTGGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04605 GRM2; metabotropic glutamate receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32702 lncRNA upstream 108512 15276640 ~ 15278716 (+) True G27733
TU32642 lncRNA upstream 280054 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 506804 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 537107 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 594606 14792411 ~ 14792622 (+) True G27450
TU32738 lncRNA downstream 44332 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 62336 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 187824 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 347176 15774376 ~ 15775849 (+) True G28040
TU33047 lncRNA downstream 349698 15776898 ~ 15778600 (+) True G28041
XM_026920001.2 mRNA upstream 3134 15308839 ~ 15384094 (+) True tex264a
XM_034313505.1 mRNA upstream 82734 15278840 ~ 15304494 (+) False fancd2
XM_026917572.2 mRNA upstream 82734 15278842 ~ 15304494 (+) True fancd2
XM_034313514.1 mRNA upstream 82734 15291280 ~ 15304494 (+) False fancd2
XM_034313516.1 mRNA upstream 103850 15278822 ~ 15283378 (+) False fancd2
XM_026928781.2 mRNA downstream 5070 15432270 ~ 15440328 (+) False parp3
XM_034300687.1 mRNA downstream 5694 15432894 ~ 15440328 (+) True parp3
XM_026923867.2 mRNA downstream 14020 15441220 ~ 15446170 (+) True gpr61l
XM_026919013.2 mRNA downstream 24234 15451434 ~ 15453127 (+) True LOC113529636
XM_026924038.2 mRNA downstream 29446 15456646 ~ 15461002 (+) True cav3
XR_004580083.1 other upstream 92874 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 195572 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 1885932 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 1887863 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 754118 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3347570 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3390202 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 4107241 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4682930 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile