RNA id: XM_026930160.2


Basic Information

Item Value
RNA id XM_026930160.2
length 3386
RNA type mRNA
GC content 0.45
exon number 7
gene id eefsec
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16188335 ~ 16195260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATATAATCTGTTTTTAACAATAACCGGGCAAACGTGATAATACTTTAAACACTTGATattttttaactcattttagCAGATATGTTGCACGGAAAAACCTAACGTATCGATCTAAACTATTTGGAACCTGAATACTCTGAACCATATTTGCAGCCGGAAACATTTTACGGTAACGCAGGAAGTGAATCTGTCAAATTACAAAACTTTAGAGTAAGCTTGGCCCGTGTACTGAAACTAACGTATTTTTGTTGGCGTAAATTAAAACGAAAACATTTCAGCAAATAACACATCATTGAGGTATCATATTATTGTCAGAATAATTTTGTTTTCCGTTTATAAAAAATCTGCACCAGCAAATCTGAGCTCAGGTCAAAGTCTGTTGACGCACTGAGCTGACTGAGGGAGATCACTTCGCTGGCATAGTCGCAGATCTCTCGGATATGGCAGATCCCGAGCCGACGCCTGGGGACGGTCTCCCCAAAACTCTGAACTTTAACGTGGGAGTGCTGGGACATGTGGACAGCGGAAAGACGTCTCTGGCTCGAGCTCTGAGCAGCACCGCGTCCACGGCGGCCTTCGACAAGAACCCGCAGTCCAAAGAGCGCGGTATTACACTGGACCTGGGGTTCAGCGCCTTCACTGTTCCCCTGCCGGAGCACATGAGGCAGAGCTGTGGAGAGTACGACAGCCTGCAGTTCACACTGGTGGACTGTCCAGGACATGCCTCCCTCATTCGCACCATCATTGGCGgGGCTCAGATCATTGACCTGATGTTGTTAGTGGTCGACGTTGTGAAAGGCATGCAGACGCAAACAGCAGAGTGTctcctgattggtcagctcACCTGTTCACACATGATCGTCATCCTCAATAAAACAGACCTGTTGCCCAGTGACAAGAGACAGAGTGCCATTGAGAAGATGACCAAGAGGATGCACAAAACTTTGGAAAACACTAGATTTAGAGGTTGCCCAGTCATTGCCGTGGCAGCAAAGCCAGGGGGACCCGAGGCTCCAGATACAGCTGAAGCGCAGGGAATCACTGAGCTCATAGAGCTCCTAAAATCCCGGGCGTTCCTACCTCAGAGAGACCCATCTGGTTCTCTGCTCATGGCAGTGGATCACTGTTTCTCCATCCGTGGCCAGGGAACAGTCATTACAGGCACCATCCTGCAGGGGGCACTGCATGTCAATGATACACTTGAGATACCTGCActcaagGTGACTCGGAAGGTGAAGTCGATCCAGATGTTCCGTAAGCCAGTTCCTAATGCGATGCAAGGAGATCGGgtcggtgtgtgtgttacacagttTGACCCAAAGCTGCTGGAGAGAGGGGTGGTGTGTACCCCTGGTTCACTACATACCATTCATGCTGCCATTATTTCTGTTCGGAAGATCGAGTACTACCGTGGTGCACTTAGCAGCCGTGCAAAATTCCACATCACTGTTGGACATGAAACAGTCATGGCACGTGTGTCATTCTTCAGCCGGGCTCCTCTAAGTGCTGACTCAGGAGCAGCGTCTCCTACAGAACAGAGCGCAGAGGCTTTCTCATTTGACTGGGAGTTTTGCCACCAAGAGGAGTATTTGACTGGCCAGGGAGAAGCTGAGGGGCGGGATCCAGCGCAGTGGGCATTATTAGAGTTTGAACGACCTGTCACGTGTCCACCACTCTGTTTGGTGATTGGCTCACGGCTGGACTCTGATATCCACAGTAACACATGCAGACTTGCGTTCCACGGAAAGCTGTTGGAGGGCTTCGAGGACAAAAACTATGTGGACAGTGCATTGCCCAGGCTCAAAATCAGTAAAGACAAGCACAAAGAAGGAGCAGTGGAACGGGTGACAGACGACTACACTGTGATTGGTAAAAACCTGTTCAAGAAAGAGACCAACCTTCAGCTGTTTGTGGGGTTAAAGGTCACGCTTTCTTCAGGAGAGACAGGGGTCATTGAAGGCAACTTTGGACAGAGTGGCAAAATCAAAATTAGAGTTCCAgAGGGACTGaaagaagaaacaaagcaactcctctcttcttcctccaagAAAAAGGGAAAGGGCGGTGCTAAAAATGAACCGCCTAAAGAGGAGAATGCCAAAGTGGACTCTCAGCCTATAACcattcatttgaattttaaaagatATGTTTATGACCCCCATAAAAAGATGGTGCAGTCTTGATTTTTGCAGCACTAATTGTTATGGTAGAGACTCAAGCTCAGGGTAATCATCTGAGCAGTCACCTGAGGTGCTGTGCCCATGAGTGTGGCAGGAAGTCTGAGTACGTAACCCTCTGGTTGGCTATCTGTTACTTTGGAATCTTGCTGTAGTTCCCCTGTAATAAAACCCAACACTAGAGAAAATACTAAATTATAGAAggcattctttctctcttatttACATGctttggaatatttttttattctagttGTCAAATCCATTATCCATATATTTCTAGTTAATtatcaaatactgtatattgcttGATGCATATAATTAAGGGTGTTTGCTATACTTGCTTAAGTGGCATTTTAgtataacacaaaaaaacagctaaattaTTTTTGCGCATATGTTTCTCCTAAAAGCTTAAAACCTACTTCTAGAAATGCTGATGGCTATAACcctttctgtgcatgtgtgtctcagGCCTTTCCTGTGTTCTGTACTAACATTAATGAAGTGAAGCAAAGTTgagtttcttttattaattacaacaggaagagagagggaataTGCTGCTAAACACTGCAGGGCCTccgaactctgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgagtgtgagagagagagagaacctgtGTTAGATACGACAGCTTGAGTCTGTTAACCTTTCTAATCGGGGTCCTTCATCAGAAAAGTCCTACACAGCACctgtttaatattcataaacaaGTGGACAGAAAGGAAAGTGGAGGAAAAGTAGGAAAATGGGCAGTgaggaaatgaaaacagaaaatgtccCGTGAGATTAAAACTACTGATTGGCTGCTTCCTTCGCCCTGAACCTTGACTCACCTTCAAATGAGACTTAAGTGGGACAGGGGAACATACTGTGTGTTAgtcatcactaacattagcacAGTCTATTTCTTAAGGTGGGAGGTAATTgaagttagtgtgtgtatgagagagagataatgatCTCATAAAGAAACTTTTTTGTATATGTACGATTGTCTATTAAGAATTCGTAGAGCATGGGTTCAACACAACTGACTGTTGGttcgaaagagagagagaaagcaagattATTGCTTGGTCTGAGACCAGGTCTTACTTTAATTGCACTCATACATGCAATCACTCCCTCTCTATCCAAGTGACAGGATTGAATTAAAATCACAAAGTCAAAATT

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33361 lncRNA upstream 33091 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 65195 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 66003 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 82063 16106043 ~ 16106272 (+) True G28156
TU33170 lncRNA upstream 103367 16083289 ~ 16084968 (+) False slc2a11a
TU33449 lncRNA downstream 73449 16268709 ~ 16269552 (+) True G28361
TU33490 lncRNA downstream 138191 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 140932 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 150385 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 162822 16358082 ~ 16361347 (+) True G28410
XM_026925678.2 mRNA upstream 6026 16181171 ~ 16182309 (+) True mustn1a
XM_026931590.2 mRNA upstream 8201 16175199 ~ 16180134 (+) True rft1
XM_026936003.2 mRNA upstream 17111 16166729 ~ 16171224 (+) True sirt4
XM_026925394.2 mRNA upstream 22304 16157525 ~ 16166031 (+) True zgc:172271
XM_026918440.2 mRNA upstream 32255 16139534 ~ 16156080 (+) False sfi1
XM_026916248.2 mRNA downstream 31745 16227005 ~ 16230782 (+) True LOC113527941
XM_026916171.2 mRNA downstream 31745 16227005 ~ 16230780 (+) False LOC113527941
XM_026919974.2 mRNA downstream 36632 16231892 ~ 16233338 (+) True LOC113530143
XM_026929639.2 mRNA downstream 38765 16234025 ~ 16239942 (+) True arpc4
XM_026924135.2 mRNA downstream 50047 16245307 ~ 16258431 (+) True myhb
TU33403 other upstream 6032 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 893981 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 996679 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2687039 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2688970 13496082 ~ 13499365 (+) False tshba
TU34871 other downstream 2579510 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2622142 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3339181 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3914870 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4819598 21014858 ~ 21017447 (+) False insl5a

Expression Profile