RNA id: XM_026930180.2


Basic Information

Item Value
RNA id XM_026930180.2
length 2799
RNA type mRNA
GC content 0.46
exon number 7
gene id tfap2c
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10354311 ~ 10368017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCTTCCAACAGGATGAACGAGTCGAGGACAGGACAGGCTTTCGTCCGTCAGAGGGAGTGCACTTCTTAGTTTTAGCACACTGTGTTTGTTATTTGTAGctgattttttgtttaaatctcGTTTTTCTCGGAGCGTGGTTACTTGGGCGGTTGAAAGAGTCGGTGTGAGTAGTCTGTTGATGCGGCGTCTCGCGTCCTCGCTGCTGTGTAATCCCTCTCTCACCCGAGACGCGGCGGCTCCGTGCGCCAGAGTTGATGCATTTCCtcactgtgtgtagtgtgctccCGGGACTAAACTGTAGGCGCCGAGAGTTTCTCTGCTCAAGTCTTTGTGTGTAAGGCCTGTAAGGTTTGCATTCTGTCAAAGCAAAAATGTTGTGGAAGTTGGCAGATAACGTGAAGTACGAGGAGGATTGTGAGGAGAGGCACGATGGCAACAGTAATGGAAATTCACGGTTACCGCATCATCCAGTGGTTAGTCAGCCCCTCTACAGTCCGGCACCTTCTCTATCACACTCAACCGGCTCTGACTTTCAACCTCCATACTTCCCTCCTCCCTACCAACCATTACCTTACACCCAGCCAAATGACCCTTACTCTCACCTCAGCGACCCATTCAACATCAACTCTATCCACCAGTCCCCGACATCTAATCAGCAACAGCCATGGCCCGGCCGTCAAAACCAAGATGGAATCGGACCGCATGCCCGCAGTGGACTCGCCACTCAGATTTTGGGCTTAGATGGTGGGTCATCCAGTGTTCGGAGAGATGGCTTTAGGCGGCCAGAGTTGCTACCTCCACATGTCCATGGACTTGAGTCAGCAATGGGCGAGAACATGGGACTGCATGAAATGGGGCAAGGACTCGATGACGTTCAACATGTGGATGATCACAGTATTGTAACTGCTGACCAGACAGTCATCAAAAAAGGTCCGTTGACTCATCCTAAGGGCAACCCAATAGGTGTTCCTTTCCAGAGGGAGTCCCTGCTGGGTATGgtgtccaatcccacagaagttTTCTGTTCTGTCCCTGGTCGCCTCTCCCTGCTCAGCTCCACCTCTAAGTACAAAGTGACTGTAGCCGAGGTTCAGAGACGCCTATCCCCGCCAGAGTGTCTCAACGCCTCCCTGCTCGGCGGGGTACTACGCAGGGCTAAATCAAAGAATGGTGGGAGATCACTCAGAGAAAAGTTGGATAAGATTGGGCTGAACTTGCCAGCAGGTCGCAGGAAGGCGGCTAATGTCACTCTGCTAACAGCGCTTGTAGAAGGTGAGGCTGTACACCTGGCCCGAGACTTTGGTTATGTCTGTGAGACAGAGTTTCCTGCTAAGGCGGTGGCTGAATATCTGGGAAGACCCCATGTTGAACGCAATGAGATCAACTCACGCAAGAACATGCTTCTGGCTGCCAAGCAAATCTGCAAGGAGTTCACAGACCTCCTGACCCAGGATCGCAGTCCGCTGGGCAACTCAAGGCCAGTACCCATCCTGGAGCCGGGCATCCAAGGCTGCCTGACCCACTTCAGCCTCATCACACACGGCTTTGGCTCACCAGCCATTTGTGCTGCCATGACCTCGCTGCAGAACTACCTCAACGAGGCTCTGAAGCAGGTGGACAAAATGTACCTTAATGCAGCTGGAGACTCGTCACAAGGTTCCTCAGATGGAAACAGCAAAGCTATGGACAAGATGGACAAGCACAGGAAGTAAAGCATCCAGGTTGTGCTGGAACATTTTTTGAGGACCACAGAGTGGCTGATGCCTTGTCACCTGCTTGTCGGTCTAGTTGTTAATGGCTCAGTGCCCATTCCTTGATATTCTGGTCTACCAGATCCCAGAGGTTCTCCTCTTTGCTCTTCCGAGTAGCTGGCACAGATTATTGTAATTTCTCCACCAACATCTCTAGACAAATGCTCGCCCAAAACTATGGTgggagcttttttttctctttttttttaaccagataCCATTTCAAAAGTTTATATGTGGATTTTAGCATTTGGTTTTTTCATGAAGAGGAAGTCCCACATTTTTGATGTCATCTTCTTTGGTGCTGACCCTCTATACAACATGCAGAGGACATGTGATCCACTTTGAGAGAATAAGTAGCTTTTTGCTTGACTTCATTTGGATGCAGTGTTATTGGACTTCTGTCTGTGGGAGTATTGTTAGCATGAATGAGTGTTATGTATGTCTCTATTCTCTTCATAACTAAGTATAGATATAAATGTCCCTAAAGGCACTGTAATATTTGTCAAGTGACAATTTGGGCTAAATACAAGATGGGTGTATTTTCAGGGGTGTTTTTTTAGTGTCCTATTTGCTTTACACCAAATGTTCACCAATTAAGATCACAATGATGAACAAATTTGCCCCAGTTAAGTACACTGGTAACTTGCTTAATATTTTCATCCACATCCTACAGTTTTCCGAAGTCATGTGCATACACATATGCATGTGTGGTTTGTGTGATATTAtacatgttttctgtaaatacagtatgtcttttttatacttttagaTTAAATGGACTAGAAAATTTGCTTCTACTTATCTTGccctaaatgtaaatattttctaatttatgTTGTAATTTAATGGGATTTGTAAATACTGGTACAATTCTGGTGTATGGTTTTGCTTTCAAACAGACGTCTTAATCTTTCTATAAATAGGGTAGTTTTTTATCATATAGTCATTAGGCCTTGGggattgttttcttttcatatatGTGTAAAAGCCTTTTAAAGCTATAGgataaagaagaataaaaagaaaacactgttcATAGTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0014032 neural crest cell development biological_process
GO:0014036 neural crest cell fate specification biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29248 lncRNA upstream 35618 10320531 ~ 10320796 (+) True G24670
TU29246 lncRNA upstream 37585 10318618 ~ 10318829 (+) True G24668
TU29236 lncRNA upstream 109037 10246944 ~ 10247377 (+) True G24658
TU29231 lncRNA upstream 118292 10237886 ~ 10238122 (+) True G24653
TU29049 lncRNA upstream 175932 10180243 ~ 10180482 (+) True G24494
XR_003403528.2 lncRNA downstream 13384 10381401 ~ 10395544 (+) True LOC113534804
TU29333 lncRNA downstream 84232 10452249 ~ 10452762 (+) True G24751
TU29341 lncRNA downstream 121271 10489288 ~ 10490288 (+) True G24759
TU29576 lncRNA downstream 453450 10821467 ~ 10847125 (+) True G24989
TU29633 lncRNA downstream 548039 10916056 ~ 10918504 (+) True G25035
XM_026916832.2 mRNA upstream 40889 10289199 ~ 10315525 (+) True rtf2
XM_034310722.1 mRNA upstream 147980 10203574 ~ 10208434 (+) False nat8l2
XM_026927245.2 mRNA downstream 566687 10934704 ~ 10974521 (+) True necab3
XM_034299987.1 mRNA downstream 570518 10938535 ~ 10974521 (+) False necab3
XM_026923214.2 mRNA downstream 660291 11028308 ~ 11058982 (+) True snta1
XM_034312255.1 mRNA downstream 845328 11213345 ~ 11252653 (+) True ralgapb
XM_034312256.1 mRNA downstream 845328 11213345 ~ 11252653 (+) False ralgapb
TU29055 other upstream 157959 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 449243 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 759560 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 901952 9450925 ~ 9454462 (+) False hmga1b
XR_003403740.2 other downstream 386498 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 538183 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 1836512 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 2158153 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 2898010 13266027 ~ 13331868 (+) False si:dkey-238f9.1

Expression Profile