RNA id: XM_026930465.2


Basic Information

Item Value
RNA id XM_026930465.2
length 5603
RNA type mRNA
GC content 0.47
exon number 18
gene id dnajc6
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21342709 ~ 21378774 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGCGAGCAGTGAGCTTCCGGCGGCGTGAATAGTGCTGTTGGATGAAAGAGGATGGAGAAGCCGCAGTAAATGCGGCTCATGATGCCGACACGTTTCTCCTCCGGTATTCAGgctagagacagacagacagagagagagagaaggagagagagagagagagagagagagagagacgctgcATAACGGGGATGTGATGCATTAgtctcctctcctcccttcttctcctcctcctttgcTTGTCCACCGCGAGGAGGCTGAAGATGCGCACACCACCTTGAAGCGACCTCGTTAGTACGCGATTGACGATTTGTGCTCATGAGCCTGCTCGGAGGCTACAAGAAGAGGAGCGGTTATGATGGTTATGAATCTTTGCAGTTGGTCGATAGCGGAGGAGGCGGAGGAGACTTCAGCAGGAgcggcggaggaggaggaggaggaggtggaggtggtggtggtggaggaggaggaggaggattgGCAGCAGTGACCCTCGGCTCCAAGGCGCGACTGGACCACTGCAGCATCATGGAAGGCTCAGATATGGATGGGAACTATGGGGGTGGACTGCTGGACATGGTTAAAGGAGGTGCTGGAAAGTTCTTCAGCAACTTCAAGGACAACCTGAAGGACACCATCAAGGACACTTCCACAAAGGTTATGAATCAAGTGGCCACCTACACCAAAGGAGAGCTGGACATTGCCTACATCACCTCGCGTATCATAGTGATGTCATATCCTGCCGAGGCTGTGGAGTTGGGCTACAGGAACCATGTGGAGGATATCCGCTCTTTTCTGGACTCGCGTCATGCTGATCATTACACTGTTTTCAATCTGTCCCAGAGGAACTACCGTGGAGCCAAGTTCTCCAACAGGGTGTCTGAATGCAATTGGCCATCCAGACAAGCCCCGAGCCTTCACAACCTGTTTGCAGTGTGTAAGAATATGCACAACTGGCTCAAGCAGAACCccaagaatgtgtgtgtgatcacttgCTCGGATGGCAGGGGTCCCTCTGGTGTGCTGGTCTGTGCCATGTTCTGCTTCTGCCACCTTTTCGTTAACCCGGTACCTGCCATGCAACTGCTCAGCGCCAAGAGACCCGGATCAGGCCTGTGGCCCTCACACAGGAGGTACGTAGGCTACGTGTGTAGCATGGTTTCTGAGAAGCCCACATTGCCCCACTCCAAACCGCTGATAATCAAATCTGTCACGATGAATCCCATACCCTGCTTCAACAAACAGCGCAGTGGTTGTCGACCTTTTTGCGACGTCCTGATTGGCGAGACAAAGATCTTCTCCACAGCACAGGACTATGAGAGGATGAGGGAGTACAGGGTGCACGAGGGAAAGGTGGTCTTCAACCTGGGAGTGAGTGTCCAAGGCGATGTCGTGATCTCAGCCTATCACATGCGCTCCCACGCACTACAAGCCAAGGTGACCAACACACAGATATTCCAGATTCAGTTCCATACAGGCTTCATCGCCCCCGGCACAACAGTCTTAAAGTTTATGAAGTCAGAGCTGGATGCGTGTGATTCTCCAGACAAGTATCCTCAGTTGTTCCAAGTGCTGCTGGAAATTGAggtggagaacacagagaagcAGAAAGATCTCACACCACCCTGGGAACAGTTCCCCACCAAAGACTTGAGTCCAAACGTGCTGTTTTCCTGCCACCAGGAGCACAAGGATGCTCTCGCTGTTGCAGATCCAGCGCAGGCCCATGGGGCCCAGGGGGGCTGTGTGGGCCCAAATGAGGAGAGCGAGCCCTCAGATGATGACATGCTCTCGCTATCCAGCCAGCAGAGCAGCGGCAGTGGAGACAAAGCCAAAGGGGCCAGTAAAGCCGAGGCTCAGTCCGCTGCTCCCCCTCCGCCTGCTGAGGACGTTGACCTCCTGGGCCTAGACGGAGGAGACATTCAGCCTCCTCCAACTTCCCCACAGCCTTCTACCACCACTAACACCACCACTGACCTGCTGGGAGATCTATTTGGAGCTCCAGGCTCTCAGATATCCAGTGGCCCCACTTCTGCCCAGTCTACTCCTAAAAGGACTGCCTCCTCCACCTCGCCTTGCCCCTCACCTAGACCTACAGACAGTTTTGACCCGTTTGGGTCAGCTCCATCTACCGCAAAGCCTCAAGACTTTATGGGGGCCTTCCTGGGACCAGGTAATGTGGGGCAGCCAGAGCCCTTCCTGCATGCTGCACGCTCTCCATCTCCCACTATGCAGAACATGGGCTTGGGCCGCAGCTCGCCCGTGCCCCCCACTACACCCACAGTAAACATCCAGCAGCAGAGCACTGTGGGAGGAGGATGGGACTGGAACAGAGCAGCTCCCCCTGGTGGTGGTTTCGGTGTAGGCAGTAAATCAGCTGGTACGAGTCCTACTAGCTCTGTACACAACACTCCTACTCACCAGGCCAAACCGAACACCCTGGACCCTTTCGCTGACCTCGGCAACCTGGGAACAAGTCTGGGAGGTGGATCAGGATTCTCCAGTAAACCCACCACTCCAACTGGAACAGGAGGAGGATTTCCTCCCATGAGTTCCCCCCAGAGACCCACTGCCTCTCCCCAACACACCACAGCAGGCTGGCAGTCCAGCACGGCTTTCCCCTCATGGCAGCATGGAGGTGCGGGTCAGTGGCAGCCACAGGCCCAGGCCAAAGCCCCAGGACCATCCATGACACACAGCTCTCCTCAGAACAGGCCCAACTACAATGTCAGTTTCTCCGGCATGGGTGCAGCTGCGACAGGGGGAAAAGCACAACCCAACATGGGTACCAAACCGAAGGCTACTGATGCTAATTTTGATGACCTGCTGTCTGGCCAAGGCTTTACAGGCAGTAAGGAAAAGAAAGGCCCAAAGACTATAGCAGagatgagaaaagaagagatgGCAAAAGAGATGGATCCAGAAAAACTGAAGATCCTGGACTGGATCGAGGGGAAGGAGCGTAACATCCGCGCTCTACTCTCCACCATGCACACAGTGCTGTGGGAGGGAGAGAGCCGCTGGAAACCTGTGGGCATGGCTGACCTCGTCACTCCTGAACAGGTGAAGAAGGTCTACCGCAAGGCTGTGCTAGTCGTCCACCCCGACAAGGCAACTGGACAGCCCTATGAACAATATGCCAAGATGATTTTTATGGAACTAAATGATGCATGGTCAGAGTTTGAAAGCCAAGGACAAAAAGCTCTTTACTGAGACTTCCTGCACCGAGCGACCGCAGAAAAACCCCACCCTGCTGCTGTTTTACAACACAATCGGTCAACCACTCCTCTTCAGAACAGCATGAGACGATGACCAGGTTCATCAGAACCCCCTTCGCTGTTCTCCTCCCTCTGCTACATCCTGCTCcgtacactgcacacactagAGCATTCGTCTGCAtagtgtgactgtgtgagtgtCAGTCTGTAATCACTTACGTAACTGGTCTCTGATAAATCAGCTGATGAGCGAGGTACTTCGTGAGCTTAGAAATAGTCTTGTGTTCTCCACAAAGCTAGAACTCACATATCTTTCTTTCCATCAAACACagtatttcttccattttttttttttgtagttcttAGCTAGTTCAGCACCTAAATAACCACACATTTAACTGATCTAAGTTGCATATAGTGGTGTGAGTGGTGTAGACCATGCGCAGGTCCGAGATGACACTAAAGTGTGCCCTTAATCATACGTAGCACCATGAGTTAAGAGCAAAAGTTGAAGGTAAGCATGAGGTAACACTGTCAGCATACTCTTCCGCACATCTAAACTGTGTGGAGTGACACGAGGCTGTTGAAATTCAAGTGCGGGGAAGAAAAGCACAGAAATAACGAAAGACTAGACAAGTCTTGTACATGCAGCtagatatattgatatatttaaCAGAATCTGTGAAAAGCAAATGACTAGGAGTTGAATTTTTCCACTGACTACTGACATATctgtgtgtatgaaatgtgctgCACTGTATTTTATGTTGTATTGTTTACAAAAGTAGTCTTAAGACAAATGGTTTATTCACAGCATAGAGAGtctaaaacaacaaaacacaagtaGCTACTAATAATATTCCTACTGAAATAACATTGTATTGTGGTGTGTGCTTAATTCATTGTGACAGGTGAGTACTAAAATCTTAACACTGGAAAAATTACAgtgtacatttattaaaatgatcatgAGTAATGGGATAGTAGTTAGGGTGCTTGAAGGAAAATCATTTTGACATTACAAAAACAATTATTGAaaatttaatagattttttttttggaatgagAGTGAattgagaaatattttaaaaaatgacactgtTTTATGGTGCCTTTCAAtattcactgaatcattttaGTTTGTTCTAATTGACcttattaatggataaaaataaataatgtttcaaatagatacatatacaatatatacagagGCATATGGTTcaataaaaaaggtttaaatattAGTCCATGACACCCATTTGATGTTTTGGTTTTATTCAAgtctgcatgttttttaaattgaataacACTGCTAGACTTCCAACATATTCTATGGAATAATATGAAATATCTAATTATGTCTCTTATAATTcatgataataattatatagTGATAGTAATGAACAAGGATTTTGTCACCTTTTTTGACCAGagcccagattttttttttgaatgaaccAGGATTTTGTCACCACAGTTTTGTTGGCTTGACAAAATTTTCTGACTGAATCAAGATGTATATTTGGCCTGAatatgcacgtgtgtgtgtgtgtgtgtgtatgtttgtataaGTGTGCATTGATGTCTATAATTCTCCCAGTTTATTGACTCACTAGCTCTCTTGTGTTAGGGAATGTGAATGACAGAATCTGCATTGCTTCTTTTGCCATAGAGATCTTTCACTTTAATTTCACATATCATGTAAAGAAGACCTCAATATTGTCATCTTCACTGAACATCATCAAATCAACTTCTGCAATATTTGATAGCTTCAAATCATGTGTAGGCCTGTAAAGTGGTACACAGTCCAGATGTAATGACTCTTAGTGTTGGACAACCACAAAACTGATCTGCCCTTTCTCAATTGGTATATTTGCACTGGAATGGCACTATGATTTACAATAGGTATGTGCATTAACATACAGTACCTACATACCCATTGCTCATTATTTCTATGCCTATGTGAAAAACTGGGTCCTGCTGTTGACGTTTAGGGCTCTTCTGGATCTTTCAGTTGActgcctctccctctctgcaAAAGACTTTCCTGAATGTCTTTTCAAAATACCAAGCACTGATTATTGGATGGACCCCTGCATCTGGAATCATACACTCCTCTTCCCTCACCTGTTGTGGACTGAATTATCTTCCTCCTTGAGGCTGTTTTGTTGTTCCTGAAGCTAATCTCTGTATACAGTAGTGAACGTGTGGTGTTACCAATAATACTGTACTATGTAAGAAGGTGGTTTGGATGCAGTTTTGTGTTTGCCTGTCTGCTGTATCACCATTACTGAAATGTGAACTTTATTTTATGTGTTCCCTCTCTTGGTTTCACCCGTAAAAAAAGTGAGCTGCACAAATAAATGGGCAAGAGAGTACGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36880 lncRNA downstream 59484 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 276971 21062894 ~ 21065738 (-) True G31094
TU36669 lncRNA downstream 382318 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 685326 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 686189 20575961 ~ 20656520 (-) False G30899
TU36922 lncRNA upstream 5635 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 10703 21389477 ~ 21412173 (-) True G31454
TU37132 lncRNA upstream 153474 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 191082 21569856 ~ 21612822 (-) True G31486
TU37141 lncRNA upstream 223770 21602544 ~ 21603863 (-) True G31489
XM_034310139.1 mRNA downstream 24886 21283025 ~ 21317823 (-) True lepr
XM_026923618.2 mRNA downstream 80594 21112205 ~ 21262115 (-) False pde4ba
XM_026923625.2 mRNA downstream 127148 21112205 ~ 21215561 (-) True pde4ba
XM_026923634.2 mRNA downstream 172648 21112205 ~ 21170061 (-) False pde4ba
XM_026923641.2 mRNA downstream 222218 21112205 ~ 21120491 (-) False pde4ba
XM_026930493.2 mRNA upstream 8136 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA upstream 8136 21386910 ~ 21400927 (-) False ak4
XM_026919886.2 mRNA upstream 70772 21449546 ~ 21531427 (-) True raver2
XM_034298204.1 mRNA upstream 160225 21538999 ~ 21579079 (-) True cachd1
XM_026922851.2 mRNA upstream 255793 21634567 ~ 21756087 (-) True ror1
trnap-cgg_1 other downstream 1956196 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1962197 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2525511 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2526379 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2535959 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 85087 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 85087 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 85087 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 85087 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 85087 21463861 ~ 21531428 (-) False raver2

Expression Profile