RNA id: XM_026930484.2


Basic Information

Item Value
RNA id XM_026930484.2
length 2112
RNA type mRNA
GC content 0.43
exon number 6
gene id ak4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21386910 ~ 21400928 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCTGGGAGGCGTTGAAAAATAGGGCGTTTAAATTTCTCGTCCATTCATTTGCAGAGAAGGAGGTGACCCCACCATCTCCAGCACGGCTGGGTGGAGATCGCTTATAAACGCGTTAGTGCACCAGCAGGAAAACTCGGGATTGTTTATTCTTTCTGTGAAAAAGCCTGCATAAACTGCACATCAGGTTCAGTGTGGGAAGGACATGTCCAAGCTGTTCCGAGCCGTGATCCTGGGTCCGCCGGGCTCGGGGAAAGGAACCATCTCGGAGCGGGTGGCGAGCAGTTTCGGCCTGCAACATCTGTCCAGCGGTGACTTCCTGCGCGAGAACATCGCAGCTAAAACTGAGGCTGGAGTTTTGGCTAAAACGTACATAGAGAAAGGTGCTTTGGTGCCAGACCATGTGATGACCCGCCTGATGCTTCCCCGGCTAGAGGAGATGACCCGCCACAGCTGGCTGCTGGATGGTTTTCCTAGGACTCTAGCCCAGGCCGAGGCTCTGAACAGTGCCTGCGAGCTTGATGTGGTCATTAGTCTTAACATTCCTCTGGAGACGTTGAAGGAAAGACTGCGTCATCGCTGGATCCACCCAGCCAGCGGGAGGGTGTACAACATGTGCTTTAACCCTCCCCGTGTCCAGGGAGTGGACGATATCAGCGGTGAGCCACTGATTCAACATGAAGATGATAAACCAGAGGCACTGGTTGCCAGATTGAGGCACTACAAAGACGTGGCAAAGCCTGTCATAGATTTATACAGGGCCAAAGGCATCCTACACATGTTTTCGGACACAGAGACGGACCGGATCTGGCCTTACGTCAGCTCACTTCTGAGCGCAAAGATCCCGACAGACCTAGCAGATGCTCAAAGGGCCACAACCCACTGAAGAAACGGGTTAATTCTACATGGAGGTATATCAGTCATCACTTAGACCTTCGTTACATAGTTCATTCCTTAAAAAAGCTATAGTCTTTATCCCTCTCTTTCTATTAAATGCAGTGTATCAAGAATGAATCATCTGAATCATCTTATTTTTTAAGCATTATTTTAGATGCAGCAAGGAACATGCCAAAGCCTCTGTCTGCTTTATCAATCATTAGCAACAGAAGAATACCTGCTGACTAACCTGGTTAttcatttttagtgtttttaagaaaacacaGCCATATATAAGTATGTACTTTAAGTAGAAATAAGTAAGATCTTCACAAATCAGGGTGGATAGATGgtttaaaggtttgtgtgtgtaataagttAGTAATAATGAATATATGTGACTGAATGGGAAGGGAAATATTATTCCAATATTCCTGTGACTTATCTGATTATGTCATTTCTATCATTTTTTCTGATACACTACTCTGTCTTACTGGAACATGTGATTGTGTCTTATGCTGCCTTTCTCTCTGGAATGTTCCATCAATGTTCTTATATGACTTCAACTGTTACAGAGTGCCTGCACAGACTTAAATAACACTGTGCTTGCAGTTTTTTCAGgcaaatgaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagctgaatttTTGGACTATTGGAGGTTAGGACTTTGAGAAAATGTTACATGTACAGAATGTCACATGTGCCATATACATTGAGAACACTGACAGGTTCAATATCAAACTCTTTCTGTAATTTAACTGTGACTCAGTGAGAATTTTTGCCAACAGCAATTTACAATTAATTATGTAGTTTTGTATGATTTTGAAAAGaatacttaatatttttttggaaaagttgATGCTGTTTTCCTATGCTACAAATCACCTGTCTTGATAAAAGACTGAGATAAGCTTGTGAACCACAGTGTCTGAGCTGCAGGCTGATAGAGGTGAGGCAGGATAATCTCTATATGCAAGTTTAAATGAAAGCAAATACTACATTACCTCTGAGCTACTTAACCTTTTCACAGCATTACAACTCTCTCTGTGCGTGTCTCTTTCAATAGACacaatacagtatatgcaaGCCAAAGGTCAAAACAAACCCCCTCACTCTCTTATTGTGCAATACCACACAGTTCTGAATTTGTCATCTCTAAACCAAATAAATCTTTTCTTGTTTCTAAAAA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004017 adenylate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36922 lncRNA downstream 1634 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 103685 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 321172 21062894 ~ 21065738 (-) True G31094
TU36669 lncRNA downstream 426519 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 729527 20655352 ~ 20657383 (-) True G30899
TU37132 lncRNA upstream 131321 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 168929 21569856 ~ 21612822 (-) True G31486
TU37141 lncRNA upstream 201617 21602544 ~ 21603863 (-) True G31489
TU37143 lncRNA upstream 206469 21607396 ~ 21609167 (-) True G31491
TU37144 lncRNA upstream 214394 21615321 ~ 21615675 (-) True G31492
XM_026930465.2 mRNA downstream 8136 21342709 ~ 21378774 (-) False dnajc6
XM_026930457.2 mRNA downstream 8136 21342709 ~ 21378774 (-) True dnajc6
XM_034314869.1 mRNA downstream 8598 21342709 ~ 21378312 (-) False dnajc6
XM_026930474.2 mRNA downstream 8598 21342709 ~ 21378312 (-) False dnajc6
XM_034310139.1 mRNA downstream 69087 21283025 ~ 21317823 (-) True lepr
XM_026919886.2 mRNA upstream 48619 21449546 ~ 21531427 (-) True raver2
XM_034298204.1 mRNA upstream 138072 21538999 ~ 21579079 (-) True cachd1
XM_026922851.2 mRNA upstream 233640 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 363988 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 395633 21796560 ~ 21815679 (-) True alg6
trnap-cgg_1 other downstream 2000397 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 2006398 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2569712 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2570580 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2580160 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 62934 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 62934 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 62934 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 62934 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 62934 21463861 ~ 21531428 (-) False raver2

Expression Profile