RNA id: XM_034311660.1


Basic Information

Item Value
RNA id XM_034311660.1
length 3999
RNA type mRNA
GC content 0.40
exon number 16
gene id LOC113536620
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15899291 ~ 15910072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACTTAAACACTACCTTATACCTACTGAATGCTccagtgaaaaaagaaaaaagcaggtTTTGCAAGTTTAAATAGGGGGACTGAGGGAGTGGTGATCATATCAGGTTTCGGCTAATTCAATAGATGAATAGGTTTTGAGTAAGAAAAGGAAGTGGGTCTGTGTTGTTAAATCAGAAACATaatgggagaaagagagaaaagaaggggGAAACAGAAgtgcacagagaaacacagatagTCCTTTTTCACAATCCAGAGGACTGCGGATAAAATATGTCTTGCATCTCTCAGaaacaaaaagttaaaaaggACAGTAAGCGAGAGAATGTACACCAAGGGTGCATAACCCCAGTTCTAGAGGGCAACACAAAATATCCAACTCACCAGTTAATTACTAAGTTTTACCAGCAGGAAATCATTAAACTGTGCTAGACACTGACCCTTCAGGACTGGAAGGCCCTGAAGCGTACACCTTGTCCACACAGGTTTAATTTAAGCTTTCCTATAATAGTGACTTCAAACTGCTGATTTAAGGTCAACATGTCTTTTCTATATGCATACCTTTATCATGGGTAAAGAAAAGGCAAGACCAGTTTCAGATCAGTGGCTCAAAACTACCTCTGTCTTCAGAGCTCTTGGCTCCGCCTTTAATTCCACTCATTCCTGCTGTTTCAACGTATCATTCGGAACTGCTGCTTCAAATGGACACAGTCACATTCAGAGACAGACCAGCAAGACAAATATCTGCAGAATCTCAGGAAAGGGATGCCATTTGACTCTCAAAGGAAGTACAGCAGGTCATGACCCTGTGTGGCTGTGCAATGAGATTAGGTGTGCAGAGTACAGTGTACAAGGTTTTCTTCTCTCAGCTGCATCATGAAGGACAGCTTTGAGCCCACAGTCAAATTAAAGCTGGTGAATGTAGCTGGCTCCATGGCACAACCCCAGGGCAAACCACAGCAGAGAGAACAGTGGGCCAGTaagatggatttttttctggCTGTTGCAGGACATATCGTTGGTCTGGGAAATGTGTGGAGGTTTCCTTATCTGTGTTACAAAAATGGAGGGGGAGCTTTCTTTGTGCCATACATACTGTTCCTATTTTCCTGTGGCATACCCCTCTTCTTCTTGGAGACATCATTGGGCCAGTACACTAGCCAGGGTGGCATCACATGCTGGAGGAAAATCTGCCCTCTTTTTGAAgGGCTGGGCTATGGTAGTCAGATTGTGATCCTGTACACTGGAGTTTATTACATCATTATTCTGGCCTGGGCACTTCTCTACCTTTTCTTCTCATTCAGCTCAGAGCTCCCATGGGCTAACTGCAAGAATAGCTGGAACACAGAGTACTGCATGGAATTTAGCAAGAACAACATGACCGATAATATTCCAGACAAAATTACATCGCCAGTTGTGGAATTCTGGGAGAAGAGGATTCTGGGTTTGTCTGGTGGCATAGAAGAAATAGGTAATGTGAGGTGGGAGCTGGCTTTGTGTCTCCTGCTGGCTTGGACCATCTGCTTCTTCTGTGTGTTTAATGGCGTGAAGTCTACAGGCAAGGTGGTCTATTTCACTGCTACCTTTCCTTACTTGATGTTGATGGTGCTGCTGGTACGTGGACTGACGTTGCCTGGAGCAAGTAGTGGTATCACATTTTATCTCTACCCAGATCCTACTCGCCTCACAGACCCTCAGGTGTGGATGGATGCAGGTAGCCAGATATTTTACTCCTATGGAGTTTGCACAGGGACTCTGACAGCTTTAGGAAGctataataaatatgacaacAACTGTTACAGagactGTCTGTATTTGTGCCTGCTAAACAGTATGACTAGCTTTGTGGCTGGATTTGCCATTTTTTCTGTGCTGGGCTTCATGGCAGATGAACAGGGAATGGATATTTCAATGGTGGCAGAGTCAGGTCCTGGGCTGGCATTTATTGCTTACCCACGTGCAGTGGCCTTAATGCCTCTCCCTCAGTTATGGGCAGTTTTCTTCTTCATTATGATCCTTTTCCTTGGACTAGATAGTGAGTTTGTATATCATGAAGCCCTGGTAACAGCAATCTCAGACATGTACCCCTCATTCTTCCAAAATGGACACCGACGTAAAATCCTGCTTCTCCTAATCTGTGTAGTCAGCTTCCTTATTGGTCTTCTGATGGTAACAGAGgGCGGACTGTATGTCTTCCAGTTATTTGATTATTACGCTTGCAGTGGAATGACTTTGCTGGCCTTTGCCATTCTTCAGTCCATCTGTGTTGGATGGGTTTATGGTGCAGACCGTCTGTATGACAACATTGAAGACATGATTGGTTATCGTCCCTGGCCCCATATGAAGCTCTGCTGGAAATATGTGACCCCTATTATTTGCATAGGGACATTTGTATTCTCCTTGGTTAAGTACACTCCTCTCAAGTTGAATAACCTATATGAGTACCCCTGGTGGGGTTACGCTCTCGGAGGCTTCTTCACACTCTCCTCCACTATGTTGGTCCCTTTATGGATGGTGTATGCATTTTGCAAGACCCCTGGCTCAATAAGTCAGAGAATGAAAACCCTATGTACTCCTGCTGAAGATCTGTCTAATCCTAAGTCACCCAAAGGTGTCCTCGCCTCTCGCACTTTTGAGACCTTCACAGATCTGCAGACTTTGCGTCAACACTCTCCAGTAGATGTATGACCTTTCTGCattatcaaaacacacacacacacacacacacacacacacactgcaacaggCTGCCTATCACAGATCATGGctatgtgcatttatttatttacatttaatctgTATCTCTTGTATACTGTTTAACTAATATGTTGGTATAAATAATCTATGTGAACAGAAGAGCAGAGATACTAGTTTTACTCAATACTGACATtgcataacatttattattcaaaGCAAAGCTTTGTGAGAACCATAATTAATCTATTTGTTTAGTATTTATGATTGTTAAGTTTTAAGCAATGGCTGTATGACCGTGGATGGATTTATATGGATGATTTTGCTGCACAAGGATAGTTGTTTtagatttgtgtgtttttactcataatgtatttttatgagATTGTATACATTTGTTGTAAATAGGTGTGGTCCGCAATCATGTTAGCACTGTTAGcctattttcctataaaccTATTTTTAAAAGCTTGTTTCAAGACCTCTCAGGTTTACAAATACTGCGTGTCTGCACCTGATACTCATGCATTATTAGAAAGTTTAGAAACATTAAGTGCCTCAAAAATggatatatacaaaaaaaaaaaacattgtatgtCATGAGCCCACTTATTTGCTACTGATTATCTGAGATGCATTCCAATATTTCTTACAAACTGTAAACAACCATTTGCGTATGAGTTAATCTTTAAACTTCAATAATTAATTACAACTTCAGGCACAACTTCAGTCCAAGTCATTTATTGTGCCTGCCACTGCATTTCATTACTTTCTTAATAGTCCATTGTTGATTCCTTTAAGTAGGCACTCACAGCACAAAGTGAGGAGTGGAGTTTTCAGCCAAAGTACAGTAGGTACAGTTAATGTGCTTTCTGAGTTGTATGATCTATTTTATTTGAACTAGGTCAGATCAGCTTGCTACTTACTAAGCTAGCCAATTATCTAGCAGAACAGAAGTATTATATATAGTGCAGTGCAATATCTTCTCTTCTGTCAGGGGAAATAGTTCCATCTAATGGACAAATTCTATAATTGTCAGTTTCACAAAGTTTACTTGCTTTTAAGATATCAATGTGAAGTGCAAAAACTGTGCAAAGTTTGAACATTACATGTTTAATatgttcaaataaaaaatactaaaatgttgGATGTTTGCATTTATACTGCTATTCCTTGAACAGTTCTCTGTTGTTGCATAATTTGGGTGGATTAAGTACCTCTTATAATTTTAAGAAAttgtacttatttaaaaaaaattcaataactGAGCCCAAAGATGATATTATTTAGAAGTTCATATTCT

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33234 lncRNA downstream 111138 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 173835 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 217247 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 282543 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 395248 15503832 ~ 15504043 (-) True G27953
TU33280 lncRNA upstream 18969 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 125761 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 127911 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 212657 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 215832 16125904 ~ 16126299 (-) False eif4enif1
XM_034311631.1 mRNA downstream 24573 15795801 ~ 15874718 (-) False cadpsb
XM_026930704.2 mRNA upstream 25709 15935781 ~ 15951487 (-) True LOC113536633
XM_026930718.2 mRNA upstream 50092 15960164 ~ 15975984 (-) True LOC113536636
XM_026913026.2 mRNA upstream 101926 16011998 ~ 16024469 (-) True fkbp5
XM_034300875.1 mRNA upstream 137921 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA upstream 137921 16047993 ~ 16056680 (-) True entpd8
TU32920 other downstream 430062 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 438290 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 600272 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1023301 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1362883 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1603640 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2039085 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2160915 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2667152 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile