RNA id: XM_026930704.2


Basic Information

Item Value
RNA id XM_026930704.2
length 2289
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC113536633
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15935781 ~ 15951487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCCCCAAGTTAGTAATGTAGATgcttaaaaataatcttttacCTCCTTCCAGTGATATGGCGATACATAATGATCCAGAGGCTGACTTGTCTTATCCAGAGTCAAACTCAAACTCAGGAAGAATTACTACAAAGGCCAAAACTAAGGAGAGAGGCCAGTGGTCAAGTAAAGTTGAATTTCTCCTGGCTGTTGCTGGACAAATCATTGGCCTAGGAAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGTGGAGTGTTTTTAATACCATATTTGATCTTCCTGTTTGCCTGTGGCATTCCACTGTTTCTCCTGGAGATATCATTGGGCCAGTACACCAGTCAGGGCAGCATCACCTGCTGGAGGAAAATCTGCCCTTTGTTTCAAGGATTAGGCTATGGAAATGTAGTGGTCCTGCTGTATTGCTGCATCTACTACATTATCATCATGGCCTGGGCATTCTTCtatctcttttcctcttttagtACTGAGCTACCATGGGCTAACTGCAGCAATGCCTGGAACACTGaaatgtgtgttGACTTTGATAAAAAGGACAATTTTAGCAACTTCAGTATACCTGAGAATGCAACTTCACCTGTTAAAGAGTTCTGGGAGAGGAGAGTGCTAAATCTCACAGGCAGTGTGTATGAGCTGGGCAATGTGAGGTGGGAGCTGGCTCTGTGTCTCCTCTTGGCTTGGATCATCTGCTACTTCTGTGTGTGGAAGGGAGTGAAGTCTGCAGGCAAGGTGGTCTATTTCACTGCTACTTTTCCTTATGTGatgttggtggtgctgttggTGCGTGGACTCACATTGCCTGGAGCCGTTGATGGCATCAGATTTTACCTCTACCCAGATCCTACAcgtctcacagacacacagGTGTGGATGGATGCTGGAACTCAAATTTTTTACTCCTATACTCTTTGTATGGGCACCCTCACTGCTCTAGGAAGCTACAACAAGTACAACAACGACTGCTACAAGGACTGTATTTATCTATGCCTGTTGAACAGTGGGACCAGTTTTGTGTCTGGATTTGCCATCTTCTCTGTGCTGGGCTTCATGGCTTATGAGCAGGAGACGGACATCTCAAAAGTGGCAGAGTCAGgtcCAGGGTTGGCCTTCATTGCATACCCCAGGGCAGTTGCAATGATGCCTGTTCCACAACTATGGaccatttgttttttcatcatgATAGTATTGCTGGGCTTGGACTCAGAgTTTGTGGGGTTGGAGACATTAATGACAGCTATAACTGACCTGTACCCTTCTTACTTACTCTGTGGTTATCGGCGTGAACTCACCCTGCTCTTCATCTGTGTTGGGAGTTTCCTCATTGGCCTGGTTATGGTAACAGAGGGCGGCTTGtatattttccatttgtttGATTACTATTGCTGCAGTGGGATGACACTTCTGTTATTCGCCATTCTGCAGTCAGTGTGTATAGGGTGGGTGTATGgGGCTAATCGCTTGTATGATAATATTGAGGACATGATTGGTTATCGACCaatgttcttaataaagtatTCTTGGAAATACATCACTCCTGTAGTCTGCACTGGTACATTTGTCTTCTCTCTGGTCAAATTCACTCCTCTGAAGTTTAACAATATAATTGAATACCCCTGGTGGGGCTATGCTATTGGCTGGTGGTTCACATTCTCTTCAACTCTATTGGTTCCTCTTTGGATGATCTATGCTCTCCTCGCTTCCAGTGGCTCAATAAGACAGAGATTACATGTTCTCTGCACCCCAGAAAGAAACCTTCTTCTGAACtccagcaaaacaaaaaactgttcAACGTTTATTGGCTTCACAGCTGTACCACAAGGGCAAGAACAACCTTGAAGCAAAAGCATTGTGTTCACATTGGGGTACTTGTCTACTGTGGGGGTAACTGTCTATTTGTCTCATTGTACATCAGCTCCTGAACATAACTGTTACACACTGTGATTTGATAAACAGTTTCATGCAAAATTTATAATCTACAATATTAGAGTATTTCATGTTACTCCGTGTGCATCAAGACCACATAGCCTATTGCATggaattatgttttttgtccTTGCTAAATGAACATTCATTACTTTGATATTGCAAAAGACTGATGTATGCAGTGAAGGCCAATACTAGATCAAATCATCACTCCATACATAAAGTATATTTGATAAAATGACAGTAgaggcaatgtttttttttccagctgctTGTTTTGTTGACAGTGCAATAACCAGTGCTTGTTTAATAAATTTCTGTGTTCTGACAACACAGAC

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33280 lncRNA downstream 1923 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 147628 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 210325 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 253737 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 319033 15615025 ~ 15616748 (-) True G28173
TU33314 lncRNA upstream 84346 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 86496 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 171242 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 174417 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 174439 16125926 ~ 16126299 (-) False eif4enif1
XM_034311668.1 mRNA downstream 25709 15899291 ~ 15910072 (-) False LOC113536620
XM_034311660.1 mRNA downstream 25709 15899291 ~ 15910072 (-) True LOC113536620
XM_034311664.1 mRNA downstream 25710 15899291 ~ 15910071 (-) False LOC113536620
XM_026930691.2 mRNA downstream 25711 15899291 ~ 15910070 (-) False LOC113536620
XM_026930683.2 mRNA downstream 25824 15899291 ~ 15909957 (-) False LOC113536620
XM_026930718.2 mRNA upstream 8677 15960164 ~ 15975984 (-) True LOC113536636
XM_026913026.2 mRNA upstream 60511 16011998 ~ 16024469 (-) True fkbp5
XM_034300875.1 mRNA upstream 96506 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA upstream 96506 16047993 ~ 16056680 (-) True entpd8
XM_026924815.2 mRNA upstream 122559 16074046 ~ 16083778 (-) False tgfa
TU32920 other downstream 466552 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 474780 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 636762 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1059791 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1321468 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1562225 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1997670 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2119500 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2625737 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile