RNA id: XM_026930929.2


Basic Information

Item Value
RNA id XM_026930929.2
length 2045
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC113536767
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18298375 ~ 18413955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCAGACTGGCTGAGCCAGGCAGATGTTTTTCTCAACATGCACACAGAATGACTCAGTCCTTGCTACAGTCACTTCCTGTATGGGCACTGCGAAGAAAAAAACGAGGAGATCTGACTGGCTCCCTGTTTGCCTGtttcctgaaaaacaaaaacagtgaggCATACATGTTGGAAAAGTTTGGGGCCCGGGTCTCTGTCAGTTAAGAACAACAGATCCCTGCACGTGTGTGAGTGCTTGGCATGTGTGTCTACTGTACAGCTGCCAACCTACAGAACAGTGTCCTGCATCAGTGTTAGACGTGTCCATGAGAACGTCTGCCCACAAGAAGAGAGAAGGGGATATAGGACAGGAAATGGTAAAGTAAAAGCATTGAAAAGCGCTCGAAAGAGTACAAGAAGGTGTCAAAGCAATGATGGATGATGGCTGTGCAGATACCTGTAAAGTTCTCGTTGCAGaaaCTCCTGAGTGCTTCATCTGCAGAGAAGTGCAGCTGGTGGACGGAGAACAACTGAAAAGATTTTGTGACTGCAAGAATCTCATGGCACATCATAGTTGCCTGCTCACTTGGGTCAGAATGGGGCTGAAGAGGGAGGATCAGCTGCGGTGTCGTGTGTGTAATGCAGAGTACCAGCAGCAGAGAGTTGCCCCATGGCAGTCCGTGGCGTCTCAGTGGCGTGTGTGGCCCGTGCTGGTGGTGGCAGTGGTGATGGCGGCCCTGGTTCCCTACACTGTGTTCTGCATGCTGACAGTCTTTGATAACGACCATCCACATACTCTCttcaacatggctgccatcTGCTTTGGCATCCTCTCTGAAATCCTGCTGCTCAGGCTCTTATACTGCTATATCACCAACCATTTCCGGAAAGCACAGCGGGCATCCTTCAGTCTTCAACCTCGGAACCTGGAGGAGGTGCAGGAGgctggggtcagaggtcacgaCCATAAGGCAGATGCCCTTTGGCAGTGGAAAAGCAGCCCTGTGGTGGAAAAGGCAAAGCAGATTGACTCACAGTGATTCATTTAACTTCTGGACAGGATGGAGTGTCTGCCTGCTGCCCTGATGGCTGAGAGTCAGCAGTACCAACCTGGCGCAAGCAGCAGAGCATCACATACCCAGTCTCACATGGAATTCACAGGAATGTGAATAATGATTGTGAACAATTTTGTTGGATTTCATTTGACCCTTACCCTGACCTTACCCATTCAAAACGTGGCATATTTGTTGTTAATATTGCTTCAATAATTTGTGTGTGGAAGGATATAAGATGCTTCTGGCTTTGATGTTTGCCTATTTCCTCTCTTGTTGCACTTGAATTGGGTTAAAGCCAAAGTCCGATGCTGTCCAAACATGGCTGGTGTGGATCCAGAATTTCATTCCAACCAGAAGCACACCTGATTCGGCTGAGCAAACTCTTGCTTAATGAGTTATTATTGCTTGTTCAGTCGAGTCTGATGTATTCTCACTGGTAGGAAGCATGCACTGATTCACTCCCAGTCTTTGTAGTTGAGGATAACATGTATGTTTAGAACAAGTTGTAtgtgttacatttaaattttgtatttgttaattGCACTTGtcacttttaaaaaagttaCTTAGAACTCCGTAGTGTAAGTGTACACTTCCCGTAAGTGTAGCTAAAGTGTAACATGAGCAGGTGATCATCCAGGTCCCCAATAATCATGATTCTGACCACGTTAATTCCTTAAACTCTAATGGCAAGACAAGAGAATTGTCTTTTCTGACAACTCTGCAATCTTTGATTATCAGTAAATTGTAAATGAATTTACATTTCTGccaattttgtttttgtttcgaGAAATACTGACCTGACTGTGAAATATTGACTGTGAAATATTGATATAGACTGGCATCCTGCAGTGtgtttactctcatgcaggACAGAGTGGGAGGTCTGGTATGAAGTTTGTGGGACAAAGAGGGATAGATTTCAGTAACATTCAGTAAAATGCCATTAAAACCCTTACttgaaatgagcaaaatgatAAACTGCCAATTTGTTTTGGTTTTCCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34548 lncRNA upstream 212738 18083719 ~ 18085644 (+) True G29281
TU34336 lncRNA upstream 533609 17694754 ~ 17764773 (+) True G29106
TU34335 lncRNA upstream 609647 17683821 ~ 17688735 (+) True G29105
TU34246 lncRNA upstream 763031 17530575 ~ 17535351 (+) True G29036
XR_003403164.2 lncRNA downstream 50929 18464884 ~ 18467320 (+) False LOC113530672
XR_004580300.1 lncRNA downstream 50931 18464886 ~ 18467320 (+) True LOC113530672
TU34849 lncRNA downstream 274698 18688653 ~ 18691007 (+) True G29561
TU34870 lncRNA downstream 404770 18818725 ~ 18835721 (+) True G29569
TU34910 lncRNA downstream 519646 18933601 ~ 18948514 (+) False boka
XM_026923802.2 mRNA upstream 151465 18139055 ~ 18146917 (+) True LOC113532395
XM_034311072.1 mRNA upstream 151465 18139055 ~ 18146917 (+) False LOC113532395
XM_026923793.2 mRNA upstream 151465 18139241 ~ 18146917 (+) False LOC113532395
XM_026925523.2 mRNA upstream 375563 17918400 ~ 17922819 (+) True barhl2
XM_026923587.2 mRNA upstream 457400 17804545 ~ 17840982 (+) True znf644b
XM_034311144.1 mRNA downstream 187004 18600959 ~ 18614825 (+) True dzip1l
XM_034314518.1 mRNA downstream 427482 18841437 ~ 18857162 (+) True LOC113527312
XM_034299801.1 mRNA downstream 444484 18858439 ~ 18917006 (+) True farp2
XM_034298244.1 mRNA downstream 518728 18932683 ~ 18948737 (+) False boka
XM_034298238.1 mRNA downstream 518728 18932683 ~ 18948737 (+) False boka
TU33403 other upstream 2116079 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3004028 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3106726 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 4797086 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 4799017 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 360815 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 403447 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 1120486 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1696175 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 2600903 21014858 ~ 21017447 (+) False insl5a

Expression Profile