RNA id: XM_026931590.2


Basic Information

Item Value
RNA id XM_026931590.2
length 2078
RNA type mRNA
GC content 0.47
exon number 13
gene id rft1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16175199 ~ 16180134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCAGGAAGTAAAGCGTATATTGCCCAATAACTACAGTCATTGATTTTGCCAGTGTTCTCTATGCATTCAGTCAGTGGTTACTGGTCTAACAGTGTATGTCGTAATGTGTGGAAAAATACAGGTGAACAGAGGTTTTAATGATTCGTGTCCTTCACGAGCGGTTTGTGTGACTGAAGTTTCTTGGCTCTTTACCTGAGAGGTGTGAACTGGATCATGGGCTCTGAAGACGTCCTCAAGAGTGCATCAACTCTCGCATCCTACAACGTCCTGCTTCAGGTTCTGTTCCGGGTGCTTACTTTCCTCCTGAACGCGTTCACACTGCGCTTCGTGTCCAAGGAGTTGATAGGTGTGGTAAACGTCAGATTGACGCTGCTGTACTCCACACTGGTCTTCCTGTCCAGAGAGGCGTTCAGGAGGGCGTGTCTAAGCGGAGAAGGGGCGGGGCGTAACTGGAGACAGGTTATCAACCTGCTATGGCTTACGTTACCACTCGGCTGTCTCTGGGGTGTgttactggtgtgtgtgtggctgtggctACTCCAGGCTCCAGACCCTCAGACTGTCCCACATTATGGACCTGCTGTGGGAATCTTCTGCATGGCCGCTCTAACCGAGTTGCTCGCTGAGCCTCTCTGGGTTCTTGCTCATGCTCATATGCTTGTTCGCTTAAAGGTGATTGCGGAAAGTCTAGCAATAATTGCTAAGTGTCTTGTCACCGTGATGATGGTGGTCTCTGCTCCTCAGTGGGGTCTCTATATATTCTCTGCTGCCCAGtgtgtgtatgcagtgttcTTGTGTCTTTGCTACGTTGTCTACTTCATGCATTTCCTGGGTTCTGAGGAAGCACGGAAGAAGTTCTTTCCGCTGCGCCACATCTCAGAGGTGCTGCCCACCAGAATGAACGGACAGccacTGATAAACTGGAAGCTTGCCACACTGACTTGGAGTTTCTTCAAACAATCTTTCCTCAAACAGATTCTCACAGAAGGCGAGCGTTACGTGATGACATTTCTGAATGTGCTCAACTTTGGAGACCAGGGGGTGTATGATATTGTGAATAATCTTGGCTCGATGGTGGCTCGGTTTCTCTTCCTGCCTATTGAGGAGAGTTTCTACGTATTCTTCGCCAAGGTGTTAGAGCGGGGACGTGACATACAGCATCAGAAACAAGAGGAGGTCTCTATTGCAGCTCATGTACTGGAATGTCTGCTGAAACTGGTTCTTCTGATCGGTCTGATTATCACTGCGTTTGGTTACTCCTACTCTTACCTGGCCCTCGATATGTACGGAGGGGAACTTTTGAGCAGTGGAACAGgtcccTCGCTTTTACGCTGTTACAGTTTTTACGTACTACTTTTAGCCATTAATGGCGTAAcagagtgttttgtttttgctgccaTGAGTAAGGAGGAGGTAGACAGGTATAACCTGGTTATGCTGGGACTATCTGCCTCCTTCCTGCTGCTTTCCTATTGGCTGACTTGGCTGTTTGGGGGTGTCGGCTTCATCCTGGCAAACTGCTGCAACATGGCTTTGCGGATTATCCATAGTCTTATTTACATACACCGCTACTTCCAGCACAGTGACTACACCCCTCTGTCAGGACTCCGCCCACATCCTGCACTCTTAATTACCCTCACAATAAGTTCCATCCTGACAGCCttctcagagCATAAGCTGTGTTGTGACAGTGGCTGGTTGCTGAGGCTGGCGCATGTCTCCATTGGAGCAGTTTGTTTACTGGTTGTGGTCATAGTGGCGTTTCTCACAGAAACAAGACTTGTTCAGTTCGTCAGAACTCAGCTACTACCCAAATacagcaaaaaacacacatgatcTTACATCCACAAACAATCGGTGGGACCTGTCAGTTTCGAGTTGGATCATGTATTGCCTTGATAAATTTAGGCATCTGTCAGAACTATGCAGATAATCCACAAATATCCACATTATAATTCTTTGCCTCAGGGTGGTTGCTGTGTTTGGAAACttgtatattgttttattattggagtaataaaaaatttattcaaatttctATTTCAAAAGCAATCATTAAAATCTGATGTTACAAAA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33361 lncRNA upstream 19955 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 52059 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 52867 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 68927 16106043 ~ 16106272 (+) True G28156
TU33170 lncRNA upstream 90231 16083289 ~ 16084968 (+) False slc2a11a
TU33449 lncRNA downstream 88575 16268709 ~ 16269552 (+) True G28361
TU33490 lncRNA downstream 153317 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 156058 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 165511 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 177948 16358082 ~ 16361347 (+) True G28410
XM_026936003.2 mRNA upstream 3975 16166729 ~ 16171224 (+) True sirt4
XM_026925394.2 mRNA upstream 9168 16157525 ~ 16166031 (+) True zgc:172271
XM_026918523.2 mRNA upstream 19119 16139484 ~ 16156080 (+) False sfi1
XM_026925678.2 mRNA downstream 1037 16181171 ~ 16182309 (+) True mustn1a
XM_026930160.2 mRNA downstream 8201 16188335 ~ 16195260 (+) True eefsec
XM_026916248.2 mRNA downstream 46871 16227005 ~ 16230782 (+) True LOC113527941
XM_026916171.2 mRNA downstream 46871 16227005 ~ 16230780 (+) False LOC113527941
XM_026919974.2 mRNA downstream 51758 16231892 ~ 16233338 (+) True LOC113530143
XR_004580083.1 other upstream 880845 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 983543 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2673903 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2675834 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 1184 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2594636 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2637268 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3354307 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3929996 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile