RNA id: XM_034309834.1


Basic Information

Item Value
RNA id XM_034309834.1
length 2371
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113537237
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13596849 ~ 13612881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCTAGTGACAAAAGCtcaaaataaagaacaatttcgacataaaaaattaaatgtgttacatgtacatgtactaGTGAGTTGACAACTTATTTTAAGAAGTTTGtcaaactgaaaagaaagaaatctgtctCAGCTTATTAATATATGGGTTTTGAACAAACAGTCTTGCTTTCAcctaacaacaaaaaagtattaaGTTAGTGAAACTTGAAAATGTAGTGAGCAAACTGAAAAAGCTGAGAACAGAGCTGGACCTTGTCTGAACATGCCAGAGCCAGACCTCGCCTACAGGAGGAGAAACAACAGCAGAACAATGAAGGAACGAGCGCGAGTGCAAACATCAAAGGCACAGCATGGGTGTCCACAGCCTGTGGTGTTTTGCTGGACCACGGGTTAGGCAGATGGTCTCACAGTGGGAGACAGGGATGGAGGTGGAGAGGTTGAAGCGTGAGTGCCTGCAAGAGATCAGGTGATGGTGTCTTGGGATTTGTCTCCCTGCTGCAGAACGAGTTAGGACAAGCCTGGATCCCCCTCTAGCTTGCTGCACTCTGCAGTATAGGGTGGCCTGTGCCCGTGGTTTCCACTCAGCAGTTCATCCTGGGTTAAGCAGCTCAAGTGTGCCCCAGGGAGGGCAGGGAGGCCATGGAGGTTCCTCTGGTTAACTTTGAGAACCTGGATGACATCGGAATTAACTTGGGTGACCCAAGTGACTCAGGATATCCAGCTTCACCCACTTCAGAGACACCAGAGCAGAACCAGCTGACCCATGGTCTGGATTCACCAACGCATTCACCGCAAAGATATAGAAGACCTGGAAATACAACAACCTCTCCCACAACACTCACTAAGAAAGGGACCTCTAGTTGCAACAGTCTCATCTCTAACTGGAAGGTACTTATGAATAGTGAAGGCAGTCCCTGTGAGGCTCTCCTAGGCAAGGTGGCTAAAGACTGTTGTGATGACTTGTTTGCAGAAAAGCAGAACCTTGAAGAGGGTGACCAAAGAGTAGTCATCAATGTCTCAGGAATGATGTATGAGACGACACTTAAAACCCTGAACCAGTTCCCTGATACCCTGCTTGGGGATCCTAAGAGGAGGATTGACTATTTTGACCCCATGAAGAATGAGTATTTTTTTGACCGCAATCGCCCAAGCTTTGATGGAATCCTGTACTTCTATCAGTCCGGTGGTAAGATCCGAAGACCAGCAAATGTACCATTGGATGTTTTTGCTGATGAGATTGTCTTCTACAGGCTGGGCCATGAAGTGATGGAACAGTTCAGGGAGGATGAAGGTTTCATCAAAGACCCCGAACCGCAGTTACCGAAAAGCGAGCTTCACCGCCAGTTCTGGCTCTTATTTGAGTACCCAGAGAGCTCTAGTGCCGCCAGATCTGTGGCTCTAGTGTCTGTTCTTGTCATCACTATCTCCATTTGTATCTTCTGTTTAGAGACTCTCCCAGAGTTCCGCGATGATCATGAATTCTCCCAAAAAGTTGTTAATGTAACCCGCGATGCTAATGGAACACTTCTGTCCCCAAGCCCTCCTCCCAAAACCCTGGAATCTACCTTTACAGATCCCTTCTTTGTGATAGAAACTATATGTATAATTTGGTTCTGCTTTGAGCTAGGAGTGCGCTTTGTTGTGTGCCCCAGCAAAAGTGAGTTTTTCAGCAACATCATGAACGTGATTGATATTGTTTCCATCATGCCGTACTTCATCACTGTAGTCACAGAGCTCATGGCCACTCATGACTCGGCAGCTAATCAGAACATGTCTCTGGCCACATTACGTGTCATAAGACTGGTGAGAGTATTCAGGATCTTCAAACTCTCCCGTCATTCCAAGGGGCTACAGATTCTAGGGCAAACCCTAAAGGCTAGTATGAGGGAGCTTGGCTTGCTCATCTTTTTCCTGTTCATTGGAGTCATCCTTTTCTCCAGTGCCATTTATTTTGCTGAGGTTGATGAACCCGAAACACAATTTGTGAGCATCCCAGAGGGGTTCTGGTGGGCTGTGGTCACCATGACAACAGTTGGCTATGGTGACATGTGCCCGATAACCTTGGGGGGTAAGATGGTGGGAATCCTCTGTGCCATCGCTGGAGTGCTGACAATTGCTCTGCCTGTTCCTGTCATTGTTTCTAACTTCAACTATTTCTACCATCGTGAAACAGAGCAGGCAGAGAAGCAAGTGATGGATGCAGCTGCAGAGGCTGCTGCAAATCAGAAGACTGATGAAAAATATGATAGTAACTATTCTCTGGACAAGAGCAATGGGAACTGgcagactgaaaaaaatggcattcCTTGAAAAAAGTAGTGCTACTAAAACCAGCATTACTAGCAATAAAAAGACTGAACAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31569 lncRNA upstream 79446 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 99120 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 222353 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 223039 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 223039 13351846 ~ 13373810 (+) False LOC113533310
TU31688 lncRNA downstream 13600 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 209503 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 221358 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 260434 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 388050 14000931 ~ 14054690 (+) True G26921
XM_026927047.2 mRNA upstream 6055 13585092 ~ 13590794 (+) True LOC113534264
XM_026926971.2 mRNA upstream 6055 13585092 ~ 13590794 (+) False LOC113534264
XM_026927279.2 mRNA upstream 18370 13570759 ~ 13578479 (+) True LOC113534455
XM_026927289.2 mRNA upstream 18370 13570759 ~ 13578479 (+) False LOC113534455
XM_034312744.1 mRNA upstream 81320 13510328 ~ 13515529 (+) False slc25a55a
XM_026939261.2 mRNA downstream 7443 13620324 ~ 13624171 (+) True LOC113541997
XM_026917259.2 mRNA downstream 24116 13636997 ~ 13640777 (+) True LOC113528606
XM_034312959.1 mRNA downstream 24116 13636997 ~ 13640777 (+) False LOC113528606
XM_026917266.2 mRNA downstream 24297 13637178 ~ 13640777 (+) False LOC113528606
XM_034312965.1 mRNA downstream 24307 13637188 ~ 13640777 (+) False LOC113528606
XR_004577012.1 other upstream 95553 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 97484 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1578703 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1665946 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2568437 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5161889 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5204521 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile