RNA id: XM_034312138.1


Basic Information

Item Value
RNA id XM_034312138.1
length 8085
RNA type mRNA
GC content 0.44
exon number 17
gene id pik3r3b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22773126 ~ 22964855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCTCTCACCAAGCCACGCTCACTTATGGAGGCGCATGAAACGTGCACTGTCATTACTGTGACCTTACAGCCGCGCTCTCTTGTGGGATTATTCGCGTTTAGACTCGGACGGCTTTGTGCCGAGCCCGAAAGACGGTTGCTGAGTAATGCTTTTAGACCACCAGGTGAAGTGAAGTGGACTTTGGATTGATGGACAGGGACTACTCATGTGTGTCCGTCTGTGGGACCACATCTGACACCAGCCTGAGAGGacaatttaataaatgttgCTTTACTGTCTGGCGGCTGTCGCCAGCTCTGCAGGACCTACGGACGTCCACGCTGCAGGTCTCTCTGTGCCCAAATCAGCGCTTCCACCCTTGTTCCCGCACACCCCTCCTTGGCACTGTCTTTTAATGAGACTGGGGCTTTTACCGAATTCTCTGTCCATAGTGTTCTCTACACGCCtgcacacatattacacatcaCCACAGACTACAAGTGTCCCTTGGACGAATTCAGGAAGTGTGCAGTAGTGgcctcctctccttcctctaCGAGGAAATAATCCAAATGTTGATCAGTTCTCAGGACATACCAAAACGCTCattcaggattttttaaaaatcattattctttctaaataaacaatacaaatccagaaaaaaaaaacaaaagcgtgCACAATGAGCTCAGACAGTTTTCAGTACCGTGCACTGTATGAGTACAagcgagagagaggagatgacATCTCCCTGCAGCCCGGAGACCTCCTTACTGTCAGCAAGCTAGCGATTCTGACCCCAGACTTCCAGGAGGGTGATGAGAAGAACCCCACGGGCTGGCTCCATGGCACAAATGAGCGCACCAAGGAGAAAGGCGACTTCCCGGGGACGTTCGTGGAATACGTGGGGGTTGTGCGTGTGGGCCTGTCTGCAGGAAAACCCTGGCCTAGACCTGTTCCCCCAACCCCTGGAGGACCCCAAACACCTGTAGGACCCCAGCCTCCAGGAGCCTGCGCTTCAGGGGGCTGTGGGTTGGGGGATTCGCTGGAGCAATGTACCGTGCCGGACCAGGCCCCAGCCGTGGTGCTCAGACTCACTGAGGCTCTGGAGAGACCGGGCTGGGAAAATGAGCCAGTCCACAGAACCCTGTTAGGTTCCAGTGCACCAATCAACCTACAACAGGCTCTGGACACAGACCCCGCTGCAGTGGAGTGTGAGCAGTATGACTTGGCCGTGTTGGCTGATACTCTCAGGGCTTACCTGCAGGAGCTGCCATGTCCCATCATCCCATCTGTGCTCTACAGTGAGCTGGTCTACACTGCTCAGGAAATAGCAAGTTTGGAGGAATGTGGTCAGCAGCTGAAGAGGATCCTGGACTCCCCCAGCATGCCACAATCTAACCACCAGCTCCTGGTCTATCTGACCCGTCACCTCAGCAAAGTGACTCAGAGTGGAGGAGCTGCTCAGGCAAGTGCCAGGTTTCTGGCTCAGGCCTACATCGAGGCGGTCTTTAAACACAGCCATTTCGGTGCGGATGTGAACCCTGATCATCACGTGAAGATTTTGGAATCCCTCATCGTTGTGGGAGGCCTGACTGAGATGCAAGCTGCCCCAGctCTTCCTCCCAAGCCGGCCAAACCCATGACTCCTGTGAACAGTAACGGCGTGAAGGAGGCTGCAAGCAGCTCGTTGCAGGACGCTGAATGGTACTGGGGAGACATATCAAGGGAAGAGGTGAACGACAAACTGCGAGACATGCCAGACGGGACCTTCCTGGTACGGGACGCCTCGACTAAAATGCAGGGAGACTACACATTAACTTTAAGGAAAGGTGGCAACAATAAGCTAATAAAGATCTACCATCGTGACGGCAAATATGGTTTCTCAGACCCGCTTACCTTCAGTTCGGTGGTGGAGCTCATCAGTCACTACAGACACGAGTCTCTGGCTCAGTACAACACAAAACTGGACGTCAAGCTCATGTACCCCATCTCCCGCTACCAGCAGgatCAGCTGGTAAAAGAAGACAACATCGATGCTGTGGGGAAGAAACTCCAGGAATATCACAATCAATATCAGGAAAAGAGCAAAGAGTATGACAGACTGTATGACGAGTACACAAAGACGTCGCagGAGATTCAGATGAAGCGCACTGCAATAGAAGCCTTCAACGAGACCATCAAGATATTCGAAGAGCAATGTCACACGCAGGAGCGCTACAGCAAGGAATATATCGAGCGCTTCCGCAGAGAAGGCAATGACAAAGAGATCGAAAGGATAATGATGAACTACGCCAAACTCAAATCGCGACTAGGGGAGATCCACGAAAGCAAAATCCGCCTGGAGCAGGACCTGAAGACGCAAGCTCTAGACAACAgggagacagacaaaaagatgaATAGCTTAAAGCCAGACCTTATCCAGCTGAGGAAAATCCGAGATCAGTATCTTGTCTGGCTCAATCACAAAGGCGTACGTCAGAAACGAATAAATGACTGGCTCGGCATCAAAAACGAGAACACAGATGATACTTACTTTGTGAGTGAAGAAGATGAGAACCTGCCACACTACGATGAGAAGAGTTGGTTTGTTGGGGACCTGAACCGCACACAGGCTGAGGATCTTCTGCTGGGCAAGCCAGACGGAGCCTTCCTCATCCGCGAGAGCAGCAAGAAGGGCTGTTACGCCTGCTCTGTAGTTGTGGACGGAGAAGTGAAGCACTGTGTGATCTACAGCACGCCGCGCGGTTACGGCTTCGCTGAGCCATACAACCTGTACAGCACTCTGAAAGACCTTGTTCTGCACTATCACCAGACCTCGCTGGTCCAGCACAACGACTCGCTCAACGTGCGCCTGGCCTACCCCGTCTACGCACAGATGCCCTCAGGCCCCCACAGATGAGGCCCTGcccattcccacacacacacacacacacacacacgtccctacaaacaaaacaaaacaaaatccaacaCGACAAACACttgctgcaacacacacacacacacacacacgtcagccACCTTCGGAGTTCTATATTTTTACTAGAACAATTTGGAGGGCATTCTTTCTAAAGACTGCTTGATTTGCACAAGgaagttttaaatgtttgtgaatgtgaaaaaaagacagaaggaagCAGAAGAGGCGAGTTTCAGGTGACCCACGCTGCTACCTAAACTCCAGCTGGGACTTTTTACATGCTTCTtgatttaaagctttttttttttgtcctcttttctttttcattgtcattcatttgtacatttttatcccTTTGTCCCATCCTCCTTTACTAAGAGCAAGGCaggaaaatatatatgttttgtttcttctctctctctctctctctctctctctccctctccttctttGTCATTGCGTGTATGCTGAAAAGGCAAATGTATGTAGCAAACAGACGCCTGACACTTTCCAGAGTGTTTCTCACAGTAACTGCTGCTGAACAAGGGATTGTGGGAGGGAATGGAACAGGACAGGGGTAGGGTGGGCTGGGGGGACAAGCTGAGAGGGCACAAGTGAAAATATGTCATAGTCTTAAACAAAACAGGCTTGCTTTTATATGTTAGAGGGGagttgtttaaatttttttttagtttgctttTCTTGCTGgatctgatctttttttttttttttttaaactttatgaGCAGTAATGGTGTTACAGTCCAGTGCAGAGACCAAAGTTAGCATAGGGAggaagtgtcttttttttttttttttttttttttctttgttgtgttCATTTGCTTAATGAGAATGAGAGGAAAGTGTTATTTCACCCTAAAACCTAAGACTTGGTAACTAAAGCtccagacagaaataaagattATAATTTACttgactggattttttttcttcttttaataaaacttaTTGACACATTTTGACATGACTCCTAGAATCACAAACAGTGAtgagaatattattaaaaataaagccaGTCAAGGAAATCCCTGTCATCTGCAGCTCTAGTTAAGTCCACATAGGTTTTAGGGAAAAATGTCACTTCTGCTAATGCCTATGCTAATAAACTGCTAACCACACATGAAATAGAGTTCGGGCCTGTGTCTTGTGCTCAAGCGCAAAGTTTTCCTACCAAAATCGGAAGCAGTCAATGTGAAGCACTTATTTGCCATGATAAATCCTGCAGCTACACAATTTGTACAccaaattaaaacagaaaacatgaaaCAGAACGAGAAACACTATTTGATGTGTGGTTGTTAAAATGATACAGAATCTCTGTTGATTGCTGCAGGCAAAACTTTGACTTGTTTGTGTTCAGCTTTGAATGATTCAGTGTACAAGAAGCAGAAGCAGTGGGTCAGTGATGAGAAAGACTTGCTttagatgacaaaaaaaaaacttgaagaGAGTGCAATCCAACACGTGTATTGATAGCATGGAGGTCTAACAAAATAAGCTCTGATGCACCGATGAGCGATAATCACATGCACTAAGACCCCTTTTGAGAAAAATGCTTCTTTTTCTACCTGGTGCTTCTTATAATGAGTGAATGCTTTCATTGTCAAAAAGCTAAAAGGTcaacatttgaacatttggCTACTTGTTAGTGTTCATGTTGCACAATAAAACCTTTTCAGAAATTAGATAACATCACAGCGAAATGCACAATATTCTGTGATTATACTGGCCACATCACTTCTGATTAGCACTGGACTCTCTCTTTCCCTGCTGCTCGTTCCTGGTACTGTTGTTTCGTCCACGCTCTTCTTTTAAAGCTCGATCAGCCTGATTTACTGGCGCGGGATTGCTTTTTGATGTCAGTTTTCACACACCGCATGGGCAGCTGAAGGAGCGTAACGTGCTTATTCCTCCTTTATAAACTCTATGCATTATGTCCACCTCTGTGTCACACTCGCTCCTCTATATTGTACTCCACACCAGAGAGGTTGTGAAATGTTATTCACAAGTTTACGTACAAAAAGGTCAAATGCACAGTCAGTATTCCTGTCCCCTCTGTTATATCAGGAGTTAGTGGTCATTCTAAGTGTCTGAACCTGGACGGTGAGGACTTCTGGTACAGTCAGTGGAGTCGGGTCAGGTTGAGCACAACTGACAGGACAGCAAGGCCACGGTTTAGCCGTGTCCTCGTCTAACACAGCCAGCTGATCACCGCTCCCTTGAGTGCATGTGCTTTATCTGTCTTCCCTCTTCACGCCCTGAGTGTACGGCTTCGAGATAAAAACCACATTCAGGCCCCGAGTCCTTGATAGAAGCCACATGTCCTCACAGCTTGTGACTTGAAGTTGGCCAGACAGTGAAGGattcctttctgtctgtcctctACATTGCAGGCCTTCCTCTGCCTCGCACCATGGCAACTAGCATAAGAGCAATAGAGCTCCTTGTGACTGTGTATCACGGCTCTCGCTAGGCTGCAATTGCTGAGGAAAGAGCAGCAGTGAAGCTTCCTAGTGCACACTGGGATATTTGGAGAATGACCAACGTCTCCACACGAACATCTCCAGACATCCACTTTTCAAACCCCTTCCCAGCAAATACTTGATTTCCTCTTCTGCACTATGACCCCATAGGCATCGTGGCAACCCTATTCACATGCACGGGGTTCGCTTTTTCTGTAAAACTTTTATAGATCAAAGATTCTATTTAGcgtctctctttttgttttcctttttcaaaGATGCAGATTGTTTGTCTAACCTGGGCCACTGACGGGTCCTCTCTCTATTACTTGAACTATCGCATTGCTCACTGTTGAATGTCTTTATATtgcatatatacaaatatattaaagaaGAGGAAATCCCTTTTATGACAGCCGAGTTCGGAATAtatgtaaacacatttattcaaaGACACAACTTCAAGTGTTGGTTGTTTCTTAAAGGGGTTTGCTTTAACTGAAATACGACTGTTTATTGGATCCTGCTGTCCAATATTGCACACATCATATTGAAGAGACTTTATAGAACAACTTTACAAGGCTGGCGACAGAGTGAGGTTTTTCTGTGTGTCATACAACTCATCATGTTTGTACATTTATTGAACAATTGTTAAGGCTGAGTTGtaaaagttttattaattcCTGGCATTGAGACCAAAGATTTGAGTTTGATTTCTTTTCTCCTAGTGTTTGTTTTGAGCGAATGCGTAGTTTTTccctagtgttttttttttctcaatgaAAACTCAAGGTGATATACTGGTTGGGTTATATTCGTGTTTGTCTTATCAAAAGGATAACAGACTATTGTGAATTGTATTAACGGGGTTAGTATACTCAGACTGTTGAACAATCTGACAGTTTAAGTGAAGGGGAAAAATCTTTCCACTTAAGAAACTATTTTACCCCTAAACCAGTTAAGAGTAAACCTGAGGTTCATCTTTTCCCCCCGCCGACAATTTTAGGAAGTGCTTGAATAGTTTAGTGTGCCAtcagtgttttcattttgaacgactgctcactgaaacacatCACGCCACCGAAATCCTGTTTGTCGCTCTTTTTCTCACATTCAGAAAAAGTTGGGCCTAGCTGGAGGCCTGGATTTTCTCTCCTTTGGACATttgtagagagagaaaagcgaACTAGTGCACCTAGCAATTTGTGGTTTGTCTCAAAAAACGCAATGTGATCATCATTCTCTGCAGGGCAGAAAAGCGGTGGGGTTCGTTGGCACTCTTTGTTCACACACTCCACAAAGCatgcaatatttcatttttcattttctttcctaaAGGTTTCAGGGACAAAAACAAGCATTGCATTGGGGGGTTCGTATGAAGGACATGTTtaccagagaaaaaaatgtgggaTGGGGACGGGGGGGAATTAAACAGagttaaagaaaaacagattaaCGGTGCATTACTTCAAAAGCTCAAAGGGTTCGGGCATGAACCAAAACCTCTCCACTCACCTCAAACTGTCTGAGTTGTGATTAGATCATCAGGCTTCGGTTATTTCAAGACTGTTAACGCCACAATGTACGATTCTCTTGCCCTTTTGTGCAGTTCTGCAAAGTTTTATTTGCAGTTGGGTTTGAATATGTTGTGATTCTCATTGGGAGTCTTTTATGTTCTTACCACTACTGTCACATCATGACACCCAGCACAGCTTAATGGAGTAAAGCttcttatatttaaataaagaaaaaatggagaaaaaaaaggaaaagtaaaaaaataatttaaaaagaaaaaaaaaataacaaaacaaaacccactCTCCCTCCCACTTTGACATACGTACAAACCCAGCATGCTTCTTTGGTACTCTTGACTgttgttttgtgtaaaaaagaaaaagttaaaaaaaaaaaaaaagatgttgaaACAAGAACTgttatttgtctgtttatgGTGTAGTCAGATATACATTTTGATATCGCTTATTAAAAACACTGCTTTTTCAGCTGAAATAAGTTTGAACCCTGTGTTTCAGTGGACAACGCAAAATATGATATTGTTCCTAAATACTGAGAATGAGGGGCCGCATCAGCAATAGCAAACCTGCCACAGGTTTCGACTTTTTTCCACAGGATTTTATCGGTACATCACTGGATAATGACAAAGAGTCCAAGAATCTACTAATACCTAAGTCTTGAAACAGCAACATTTTTATGAGTTGAATTTGAATACACTCTTTTCAGTGAATATTTGCCCGACACCAGCAGATATTTCTAGACTCAGCTTGAGCAATAAGCCGTTGGCCCTGAAATCAGCTAAATCACTGTATCCcacaaaacactaaaaaaaaaatctaaaagcacGCACCAAACTCGAATCTCTCCTGCACTACCTACACATGCATTTTTTACTTGCCGCATCAGTCATACGACAGCATCTCGTTCTGTTCATTATAGCTGGAGAACAAGAGTAGAAAACATCCTCTTTCTCAGTATTTGAATATCATTGTTGCTACAGGCTTATTGATACTCCTCAGTTGTTTTCCACCATATTTTCTTGTATCTGTTACAATAGTTTGTATTGGTTGTAGACTCTCCATTTGTTATGAGATGAACTCATGTATATTCTCAATGGAACTCCACAATATTCATTTCTCTTGcggaataaagaaaatattttgtcCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37680 lncRNA downstream 187936 22582348 ~ 22585190 (-) False gpbp1l1
TU37658 lncRNA downstream 195291 22577631 ~ 22577835 (-) False ccdc17
TU37647 lncRNA downstream 204290 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA downstream 204290 22565292 ~ 22568836 (-) False G31934
TU37625 lncRNA downstream 212518 22538323 ~ 22560608 (-) True G31916
XR_003403825.2 lncRNA upstream 25592 22990447 ~ 22995189 (-) True LOC113538262
TU38041 lncRNA upstream 77676 23042531 ~ 23042762 (-) True G32244
TU38121 lncRNA upstream 260227 23225082 ~ 23225389 (-) False dmrt2b
TU38487 lncRNA upstream 713927 23678782 ~ 23683686 (-) True G32629
TU38557 lncRNA upstream 1055270 24020125 ~ 24020779 (-) True G32686
XM_026933319.2 mRNA downstream 179265 22582303 ~ 22593861 (-) True gpbp1l1
XM_026933625.2 mRNA downstream 191183 22572432 ~ 22581943 (-) True ccdc17
XM_034300010.1 mRNA downstream 220899 22547254 ~ 22552227 (-) False LOC113538473
XM_026933622.2 mRNA upstream 83731 23048586 ~ 23062081 (-) False pomgnt1
XM_026933621.2 mRNA upstream 83731 23048586 ~ 23062081 (-) True pomgnt1
XM_034312071.1 mRNA upstream 98672 23063527 ~ 23071529 (-) True prpf38a
XM_026933572.2 mRNA upstream 121752 23086607 ~ 23095386 (-) True mpl
XM_034312063.1 mRNA upstream 121752 23086607 ~ 23093888 (-) False mpl
XR_004580163.1 other downstream 1241698 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 651302 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 2935875 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3116294 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 3665974 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 3674978 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile