RNA id: XR_003403829.2


Basic Information

Item Value
RNA id XR_003403829.2
length 4163
RNA type misc_RNA
GC content 0.49
exon number 27
gene id adam23a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 27769796 ~ 27787602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcatgcgcagtgtgTCTCCTGATGTATGCGCTGCTTGGCCACCGCCTTCCAGCCTTACTACCTTCTTTCCCGCAGCTTTCCTGTCGTCCGCGCTActatccatccctccatcctttaATTTCCCTCTTATTCTTCCCGTTTGCATGGCTCGCGCGACCATGGACCAGGATCTTCGTTGCGATCTGATGcgctgatgtcattttttttaatgtcttcaAATATGAATCATGCGTCTGATATTCCATCCGAGTCTGCTCGCTAGCGTCTTAATTGCACTGCTGCCTTCGTTTTCCTCCGCTTCCCTGGTTTCCGTGGAGAATGAGGTTGTCGATGAGAGAGGGTCTGCGACACTGTGGCAAGATGCGACGACAGCACCGGAGACTAAGAGCAATGGGAACGCTACAAGCAGACAGGACAAGGAGGTGGCCATCACGTACCCCTCACGCTTGGTCTACTACGTGAATGAGGAAGCGGAGAGCGCATACCATGACTTGGACACTCGCGCACGAAACCAGGCCACTGAAGGCCAGACCATCCACTTGGCACAGGCAAGCTTCCAGCTGGATGCCTTTGGTTCTACTTTTACTCTGGATCTTGCGCTAAACAAtgatctGCTGTCCTCAAATTATGTTGAGATCCACTATGAAAAAGACAAACCAGTTTTCTCAAAGGGAGGTGAGCACTGCTACTACCATGGTAAAGTGAGAGGGAAAGAGGCCTCTCATGTGGCTCTGTCTACTTGCAACGGGCTCCATGGAATGTTTGATGATGGAGTGTTTGTCTACCTCATCGCGCCCCTGAACCAGACTCAACCTCCGGGCACGGGGCTGAGGCCCCACACCTTGCATCGGACATCGTCACTCCGTATGGGCCGCGACCCTGCTGATTTAGCTTCTGAGGACCAGggggaggatgaggaggaggaagaacagATCTTGTCCGACATGCCTTGGCTCAGGCGGCGCAGGAAACGAGCGGTACCACAGAAGGTGTTCGATGAGATCAAGTACCTGGAGATCATGATAGTCAGCGACCACAACACGTTTAAGAGacataaaagcaaaaagcaTACGAGGAACTTTGCCAAATCAGTGGTGAACCTTGTAGACGCTATATTTAAGGAACAGCTTAACACGCGTGTGGTGTTGGTTGCCGTTGAGATCTGGACAGATAGGGACAGGATTCCTCTCAGTGTCAAGCCTCTGGACATGCTGAAAGATTTCTCCAAGTACCGGCAGCAGAACATCGGCGTCAACGCAGATGCTGTTCACCTGTTCACGAATGTCACATTTCATTACGGCCGCAGCAGCATGGCCTACATCGGAGGAGTATGTTCTATCGGAAGAGGAGTAGGGGTTAACGAGTTTGGCAGCACATGGACGatggctgcctctctctcccaGAGCCTGGCACAGAATCTGGGCATCCAGTGGGACCCTGTTAGCAGGAGAAAGGAGTGCGGTTGCATGGATTCCTGGGTGGGATGCATAATGGAGGATactggAGTGCAGCATCCTCGCAGGTTCTCAAAATGCAGTATCACAGACTTTAAGAACTTCCTGCTCAAGGGAGGAGCTTCCTGTCTTTTCAACAGACCCAACAAGCTCTTTGAGGCTACAGAATGTGGCAATGGGTATGTAGAGGTGGGAGAGGAGTGTGACTGTGGAACCAGGATGGAGTGCTATAAAGACTGCTGTAAGAAGTGCTCTCTGTCTAATGGTGCTCACTGCAGTGATGGGCCGTGCTGCAACAGCACCTGTCTGTTCCTTCCACGGGGCTATGGCTGCCGCTACTCTGTGAATGATTGTGATATTTCAGAGTCTTGTTCAGGAGATTCAGGACAGTGTCCTCCCAACCTACACAAGCAGGACGGGTACCCCTGTCAGCTCAACCAGGGCCGCTGTTATGGGGGTGAATGCAAGACCAGAGACAGCCAGTGCAAATACATCTGGGGTGCAAaggCAGGAGGCTCAGAGAAGCACTGCTATGAAAAGCTGAACACTGAGGGGACGGAGAAAGGAAATTGtgggaaagatggagagaagtGGATCCcctgcagtaaacaTGATGTGTTCTGTGGGTACCTGCTATGCACCAACATTGGTAGAAACCCCAGGATTGGGACACTGAAAGGCGACATCACCCCCACCACTTTCAACCATCAGGGACGACTGGTAGACTGCAGTGGTGGCCGTGTACTCTTGGATGATGACACTGATTTGGGTTACGTGGAGGACGGGACACCATGTGGCCCCTCCATGATGTGCCTTGAGAGGAAGTGTGTGCCTATCTCCTCCCTCAACCTTACAGCCTGTCCTTCCGGACCCAACGGACGCGTGTGCTCTACACATGGAGTGTGCAATAATGAAGCCACATGCACCTGCGACGCCACCTGGGCTGGGACAGACTGCAGCATGCACGACCCGCCGAAAGAACCACCCGCCGTTGAAGACGAGGGTCCCAAGGGTCCTAGCGCCACCAACCTTATCATAGGCTCCATCGCGGGGGCCATCCTGATGGCAGCCATAGTGCTGGGGGGGACGGGATGGGGATTTAAGGTGAAAGTATGAGCGAAGAGGGGTGGAGGTTGTGTCGTAGGCAGCCTTTGTACCATGGCTGGCCGCTACGCCTCTCTCTAACCTCGTGGAAGGCCCTGGCCCCCCCTCGAAAACCTAGAACAGAGCAAGACCCCTCACGCCCCCACCCGGACCCGCCCGACACTGCTGCCTTTACTGCCTGCTTCACTGAGACCTGAAACGTCAAAAAAAGACGGTACGACCCCAACGCCAGTGCCATATAAAGGACCGGAGACTTCAGCCTTGCCTGGTTTCCCTTGGGATTCTGAAAGTGAGCTACCTGCTGGACTGTACCCTCTCCTGCTGCTAACAGCCAGTTAGCTTTACTTGaacataaggaaaaaaaaaagagaaggaagacAAAAAGATGAGTAGAATATTTTTCAAGTCTTGTACCCAAAGCCTGTCCCAGTCCTTTCTACTCTTCCTTGACCTTTGAACCATTACCCAGTTTAGGATGGGTGTGTGTTCCTGTTCCTGACTTCCTGGCTTGATTTTGGCATGACCATCCCTGGCTGTGGCAGCTGCATGGCAGTGGAGGGTCACTAACTcaaaacaaagaggaaaaaaaaactggagagCAAATATTCCTAGAGAAGAGCAATCTAGAGCTGAGCCTACATTGAATATGCCGCATTGATCATGGAATCATTGCCTTGTGGGACTCTCCTGTAGTTGTCTTAAGGTCTGAAGGGGCCTAGGTCACCTGACCACGCTTCAACATGGGAAAAAAACTCATTCCATTTTGAGACAAACATGAGATTTTGGTCTCATGGTCTCAACATTGTTTTACATGGACATGGATTTAAACTGCTTTTTCTTTCAAGTTTCCGCATGTTGTATTGCAGGCATTTTATGCCGcgttaatgaaaaaaaaaaaaaaaaaaacaaacgaagAAAGAGCATCCAACAATTTGGCCAGTAGcttctttttctgctttatGAGTTCACCTTAAATCgccccacacatacacaattaattATATATGCCTGGTAATGTCAATAACTGCTCCCCTTAATACTTATTATACTGAACCACCATGTGTGGTCTGTCCTATCGGTTAATCGGAGAGCTGCATGAAAAAACTGCACTGGGCGCGGAGCCATGTGAAGCCTGCCACGCTTCTTAAGGTAACTGCATGTCAAAGGAAAAACAGATAACTTTTACTTACTATGCAAAAAGGAAATGTCGCACAAACCCTATGGATCAGTACCATAGAGAAATGATACTAACAATGAAATTGCTATCATTAGGCAGTCTTTTATATGCTTGGACATGTTGgtcttttaaattaattacttctatttaaaatgaatgttttaaaaaaaaaaagaacctcaGCTTCTAAAAATTGAATATTTGTTACCATAGTCATAACTTATGGGGCAGATGAATACAAAAACTTGTAAGTAGTCAGTACCGGGCTTTTGATTGGATCGGGAGGGTTTCATTTTGGGTTTTCAAGGGTTTTCTCCACTGACTTAGGGCACCTAATGTCAATTCTCATCTCCTTAATACTTAAAATTCATCTCATTTTCCCATGGAAACACTGACAGAAGAAGttaataaaagttaataaaatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40338 lncRNA upstream 64074 27652754 ~ 27705722 (+) True G34226
TU40317 lncRNA upstream 187695 27581898 ~ 27582101 (+) True G34207
XR_004577001.1 lncRNA upstream 393971 27361323 ~ 27375825 (+) True LOC117595819
TU40051 lncRNA upstream 878409 26891107 ~ 26891387 (+) True G33969
XR_004579527.1 lncRNA upstream 942822 26810470 ~ 26826974 (+) True LOC113538244
TU40488 lncRNA downstream 2064 27789666 ~ 27790330 (+) True G34335
TU40496 lncRNA downstream 15855 27803457 ~ 27804304 (+) True G34340
TU40517 lncRNA downstream 54873 27842475 ~ 27850442 (+) True G34361
TU40556 lncRNA downstream 129763 27917365 ~ 27920031 (+) True G34396
TU40594 lncRNA downstream 170039 27957641 ~ 27959131 (+) True G34425
XM_026933491.2 mRNA upstream 378 27762117 ~ 27769418 (+) False zdbf2
XM_034311266.1 mRNA upstream 378 27762117 ~ 27769418 (+) True zdbf2
XM_034311268.1 mRNA upstream 378 27763241 ~ 27769418 (+) False zdbf2
XM_026933493.2 mRNA upstream 379 27762118 ~ 27769417 (+) False zdbf2
XM_026933061.2 mRNA upstream 8303 27758188 ~ 27761493 (+) True eef1b2
XM_026933213.2 mRNA downstream 8988 27796590 ~ 27803289 (+) False casp20
XM_026933212.2 mRNA downstream 8989 27796591 ~ 27803289 (+) True casp20
XM_026933184.2 mRNA downstream 124321 27911923 ~ 27915959 (+) True aanat1
XM_026933335.2 mRNA downstream 191195 27978797 ~ 27983171 (+) True ten1
XM_026933455.2 mRNA downstream 268717 28056319 ~ 28081073 (+) True LOC113538412
TU39837 other upstream 1121427 26630594 ~ 26648369 (+) False st6gal2b
XR_003403845.2 other upstream 1139945 26613650 ~ 26629851 (+) False st6gal2b
TU38758 other upstream 3115831 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other upstream 3115831 24653185 ~ 24653965 (+) False LOC117598985
TU38551 other upstream 3748760 24020378 ~ 24021036 (+) True G32684
trnar-ccg_4 other downstream 385040 28172642 ~ 28172714 (+) True trnar-ccg_4
trnas-aga_1 other downstream 465868 28253470 ~ 28253551 (+) True trnas-aga_1
TU41602 other downstream 1669273 29456875 ~ 29457426 (+) True G35262
TU41635 other downstream 1757945 29545547 ~ 29548774 (+) True G35290
XR_004579421.1 other downstream 2524300 30311902 ~ 30324359 (+) False kynu

Expression Profile