RNA id: XM_026933321.2


Basic Information

Item Value
RNA id XM_026933321.2
length 1400
RNA type mRNA
GC content 0.41
exon number 3
gene id tmem69
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22597595 ~ 22603436 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTATTATGTAGAAACATTCGCCATATTGCTAGCTGTTGCCGTTGACCTCCGTATGTGCTGctggattataatgtgagaCCTGAAGTAGTTAATAATTTAGAGCATTTCTGGAAACTCTATGAGAGGATAGTGAAATGTCATTAGCTCTGTTAGGACGCCGCTTGGGTGGCAGCTTCAGGTGTGGGAATTGGAGCAGACTTCAGCCCGTGTCCAAAAGGTTTGTCTTCTCTGGCCACCAGATCCGctgttctctgtttttcacGAAAGACTGGAATTGCCCTCTGCCTCCCAGATACGCCACAGGTTCTCTCATCCGAGCTGAATCCATCCACTCTTCATCACAGAGACTGAAGAAACGGCAGCCGGAAGAACCACCTCCACGAGAACTCGACTTGCTTCGTTATGATCTGAAGGTTCTGAAGAACGCCCCTAAACCAGCACTGTATCTGGGATTTTCCGGTCTCTTACCATTTGTATCTGCTCCGTTACTCATGGCCATCACAGAGACATACATTCCTGAATTAGCTTACGCTCAGGTTGTATACGGAGCCTCGATCGTTTCCTTTCTCGGAGGTGCTCGTTGGGGTTTCGCCTTACCCGAGGGCAGCCCAGCAAAACCCGACTGGCTGAACCTAGCCAACAGTGTTGTTCCCTCTATAATCGCATGGCTAGCTCTGCTGTTTAGCCACAATATTATCCAGTCTGGCATGCTGGTGATCATGGGGCTGGGAATATCGCTGCATTACGACCTGGCCCTGTTACCCACGTATCCCAGCTGGTTCAAGGCATTGAGGACAATCCTCACTACAGTGGCTTTCTTCTCTTTAATGGCCACTATAGTTCTTAAAGGATTCTATCCAGAGAAGAGATATCTGACCCAGGAGTGATTtcttatttatatgtaaatctcACTTTGAACTCATaacataatacatatataaaatatacctGCCATAACAAGCTAAGAAAATCTTTatcaataaaaatgtacaattacacaatttttttaaattaaaataattgtggAGCCTAGAAGTACATATTTTAGACATGTGTGGACAtgattgtgtttgtttaattactGATACTGTTACTATTGACAACACTGTCACACCCCAGAAATGAGTTCAGTTTAACACTTCAAACGTCGTCAGTCATTCATATGCAGTAGTGTTTACAGCAGAAGGCAAATAAATGATCATGATCACTTTGCTGACTCATTTTTCACACATAAATGTGCAgtaaaatgttcagtgtttaaagACTAGTATCTAtctataatttgtaaatgtgtgacTAAAATTAATGGTTATTTTATGAATCTGGTATATGtataaattcaaaatatttttttctcctgtatttgtaatgaaaataaattgtggAACTTTTCGTTTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37666 lncRNA upstream 13151 22582349 ~ 22585190 (+) True G31944
TU37582 lncRNA upstream 84328 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 112894 22481404 ~ 22485447 (+) True G31856
TU37451 lncRNA upstream 273004 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 276295 22317683 ~ 22322046 (+) True G31744
TU37722 lncRNA downstream 205959 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 384685 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 574496 23177932 ~ 23187094 (+) True LOC113538428
TU38127 lncRNA downstream 852524 23455960 ~ 23458710 (+) False G32310
TU38129 lncRNA downstream 852634 23456070 ~ 23459381 (+) True G32310
XM_026933365.2 mRNA upstream 28023 22563239 ~ 22570318 (+) False nasp
XM_026933364.2 mRNA upstream 28023 22563240 ~ 22570318 (+) True nasp
XM_026933366.2 mRNA upstream 28023 22563243 ~ 22570318 (+) False nasp
XM_026933369.2 mRNA upstream 37729 22552816 ~ 22560612 (+) True akr1a1b
XM_026933454.2 mRNA upstream 123779 22426920 ~ 22474562 (+) False ghrhrb
XM_026933585.2 mRNA downstream 1545 22604981 ~ 22727448 (+) False mast2
XM_026933586.2 mRNA downstream 1545 22604981 ~ 22727448 (+) False mast2
XM_026933588.2 mRNA downstream 55325 22658761 ~ 22727448 (+) True mast2
XM_034300927.1 mRNA downstream 78796 22682232 ~ 22727448 (+) False mast2
XM_026933587.2 mRNA downstream 84778 22688214 ~ 22727448 (+) False mast2
TU36319 other upstream 1580894 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2488116 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3061327 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3771421 18774770 ~ 18826920 (+) False G29569
trnaf-gaa_16 other downstream 872515 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1416942 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2049554 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2049749 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 4010214 26613650 ~ 26629851 (+) False st6gal2b

Expression Profile