RNA id: XM_026933365.2


Basic Information

Item Value
RNA id XM_026933365.2
length 1889
RNA type mRNA
GC content 0.49
exon number 14
gene id nasp
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22563239 ~ 22570318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACAGTATCCGTATTTAAAGGCGCCAACAGCGCTCGATTCAGAATCAGCCGTGCGCAAGTCTGCCATTTTCTCCTGGACTATTCCTAATAATTGAAGTTGTTGGTAACGCGCACGCTAAAGATGCCGGAGGAAACCGCTGCAGCTGCTTCTTCGACCACTGAGGCTGTGGAAGAGAAGCCTTGCTCATCCAGTGCTGCAGAGAGCTCTGTAGATGTGGCTGAAGAGGCAAAGAAGTTGATTGGCACTGGAAACAGGCACCTGGTTATGGGAGATGTTGTGTCTGCAGTCAGCGTGTTTCAGGAGGCCTGTGCCATGCTAGCTGAGAAATATGGCGACACCGCTGACGAATGTGGAGAGGCGTTCTTCTTGTGTGGGAAGTCCTTGCTGGAGCTTGCCAGGATGGAGAACTCCGTCTTGGGTAATGCTTTGGAGGGAGTCCCGGAGGAGTCCTCCGAGGAGGGCGAGAAGCAGAATGACTCGAAGATTGAGAGTGCAGATAATTTGGATGAGAAAACCAGAGATGAGCTCCGTGAACAGGTTTATGAAGCTATGTCTGAGGAGAAGAGGAGTTCTCAGGAAGGGGGGGAGCCAAAAGTGGATAAAGAGGAACAAGAAGTCAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAACAGAAGGAAGAAGCTGgtgaagaaggaaagaagcCTGATGCACGTgttgaaaatggaaataaaccCATAGAAAATCTCCTCAAAAGTGAGGAGCAGACTGCTGAAAATGTtaaggaggagatggagaaagatGTCTCCTCAAAAGAGGATGATGCTGTAGTTACAAAAGAGGCAAAGGAGGATGCTGAGCAAGCTGTTAAGAGCACAGAAGAACAGAGTGGGAATGAACAGGCAGAGCCTATGGAGGAAGATGCTGGAGATgctgaggatgatgatggtgatgacgatgatgacgagGAAGCGGATGCCAATGCAGAAGATAAGGAgggtgaggaggaggaagtTGGAAATCTCCAGTTAGCATGGGAGATGTTGGAGGTGGCTAAAGTGATTTACAAAAGAAAGGAAAGCAAAGAGGACCAGCTAATGGCGGCACAGATCTTCTTGAAACTTGGCGAAGTTGGTGCGGAATCAGGTAACTACAGCCAGGCTCTTGAGGACTTCCAGGAGTGCTTAGCCATACAGCTGAAGCATCTTCCTCCTCACAGTCGTCTGCTGGCAGAGACTCATTACCAGCTGGGCACAACCTTTAGCTACACAGGCCAGTACAGCCAGGCCATCCAGCACTTCAGCAGTTCCATCAAAGTCATCGAGAGCCGCCTGGCCATGCTTCAGGAAGTAATCGACAAAACAGAAGGTGCTGAAGGAGCAGCAGAGGAAAAGCGGGAGCTAGAGGAGCTGAAGCAGCTGCTGCCAGAAATTGCTGAGAAGGTGGAAGATGCAAAGGAAAGCCAGCGGACAGCTCCTGCAGCTTCGGAAGCGATTCACCAGACCTTGGGAGGAGCATCTACGTCCTCAGGATTTGCAACTGAAAATGGTGGCTCGTCTTCATCTACAGCCACCCCGATTGCAGTTAAGCCTGCTGATGGTGCATCCTCTTCAAAATCAGCATCGGACATCTCTCATCTAGTCCGTAAAAAGgcTGTGAATTCATCTACCTCGGCAGAAGCCACGGCATGATGGAGCATTCTGAACTGCCCACTGATCTTCCAACCAGCAAAGCATGCCTGCCTCAAGTCTCTTCAtgaacagttttgttttgtaaatagGACATCTAcctttttctgtgtctgtccaaattttgtattgtaaagtttgaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37582 lncRNA upstream 49226 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 77792 22481404 ~ 22485447 (+) True G31856
TU37451 lncRNA upstream 237902 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 241193 22317683 ~ 22322046 (+) True G31744
XR_004579714.1 lncRNA upstream 332224 22227215 ~ 22231015 (+) True LOC117599246
TU37666 lncRNA downstream 12031 22582349 ~ 22585190 (+) True G31944
TU37722 lncRNA downstream 239077 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 417803 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 607614 23177932 ~ 23187094 (+) True LOC113538428
TU38127 lncRNA downstream 885642 23455960 ~ 23458710 (+) False G32310
XM_026933369.2 mRNA upstream 2627 22552816 ~ 22560612 (+) True akr1a1b
XM_026933453.2 mRNA upstream 88677 22426920 ~ 22474562 (+) True ghrhrb
XM_026933454.2 mRNA upstream 88677 22426920 ~ 22474562 (+) False ghrhrb
XM_026933383.2 mRNA upstream 156760 22392828 ~ 22406479 (+) False cyldl
XM_026933323.2 mRNA downstream 27277 22597595 ~ 22603436 (+) True tmem69
XM_026933321.2 mRNA downstream 28023 22598341 ~ 22603436 (+) False tmem69
XM_026933322.2 mRNA downstream 28024 22598342 ~ 22603436 (+) False tmem69
XM_026933320.2 mRNA downstream 30512 22600830 ~ 22603436 (+) False tmem69
XM_026933585.2 mRNA downstream 34663 22604981 ~ 22727448 (+) False mast2
TU36319 other upstream 1545792 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2453014 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3026225 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3736319 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 28023 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 905633 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1450060 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2082672 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2082867 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile