RNA id: XM_026933369.2


Basic Information

Item Value
RNA id XM_026933369.2
length 1597
RNA type mRNA
GC content 0.44
exon number 10
gene id akr1a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22552816 ~ 22560612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tGTTCGTGAAGGGACTTTTCATTTGGCGGTTTGCGGACCGGATGTGCTTTATACAGAGTAACTggtaaattaaaacattttaaaaacattttatcactATCCTTGGCTGATTTTCCAGTGAAGATATTCATTCCTGAGTCACAAGGCAAACATGACTGACTTTGCAGTTCTGAACACTGGCCGAAAGATGCCACTTATCGGATTAGGGACATGGAAGAGTGAGCCTGGaaagGTGAAACAGGCAGTCATATGGGCACTTCAGGCTGGATATCGGCACATCGACTGCGCTGCCATTTACGGAAATGAATCGGAAATTGGAGAAGCCTTTCAGGAGATGTTGGGGCCTGAAAAAGCCTTGAAACGAGAAGACGTGTTTGTGACCTCCAAACTGTGGAACACGAAGCACCATCCTGACGACGTGGAGCCAGCACTGCTCAAAAGCTTGAAAGATCTGAAGCTGGAGTACCTGGACCTCTACCTAATTCACTGGCCTTATGGCTTCCAgCGGGGAGATATCGCTTTCCCCCGACAGGAAGATGGGACCTTACTGTATGATGACATTGACTACAAGGTGACGTGGGCCGCCATGGAGAAACTCGTGGAAAAGGGACTTGTGAGGGCTATTGGGCTCTCTAACTTCAACAGCAGACAGATTAATGATATCCTGTCCGTGGCCAACATAAAGCCTACTGTTTTACAGGTGGAGGGTCATCCTTATCTTAGCCAGGTGGAGCTTCTTGCTCACTGCAGGGAGAAGGGCTTAGTGATGACTGCCTACAGTCCGCTTGGCTCTCCAGATCGTGCCTGGAAGAGACCAGATGAGCCAGTTCTCTTAGAGGAGCCAGTCATTGCAGCTCTAGCCAAGAAGTACAACAAATCTCATGCACAAATTATAATCAGGTGGCAGACCCAGCGAGGAGTCGTGACAATCCCAAAGAGTGTTACAGAGTCTCGCATCAAAGAAAATTTACAgGTTTTTGACTTCACTCTGGAGCCTGAGGAGATGGACAGCGTGACAGCATTGAACAGAGGCTGGAGATACATCGTGCCAACTATAACTGTTGATGGCAAGCCTATACCAAGGGATGCAGGACATCCTTACTATCCTTTTAATGATCCTTATTAACTGATATATTGTACTGCAGGATTATGTGCCTTCCAAGCCCCTTCAGCTGGCAGAGCTGTACACATAACACAATacatgtacactcctgggcaaaaaatgggccaagctcAAAATTGCAaattattaagcttttaatggtcttaacaaaaaatctttggtcagaaaattagcaagaattaaacaaatgcacttctGAGatctcctgtgccaccatttgctcatgtactcttgctgcagtgaactgtttggggaaaagcttgATTGATTTGTTAACACcattaaaagcaaaatattttgccatttttttccccccttgcccaggagtgtactttttttttctttttcttttttttttttttttttttttgaggccCAGTCCAAATGAACATCTtaagtctcaaccagatgccctgtgaacctttctggcaagctttattaaaaataaataaataaaacaaacagtgcacctcc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047939 L-glucuronate reductase activity molecular_function
GO:0004032 alditol molecular_function

KEGG:

id description
K00002 AKR1A1, adh; alcohol dehydrogenase (NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37582 lncRNA upstream 38803 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 67369 22481404 ~ 22485447 (+) True G31856
TU37451 lncRNA upstream 227479 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 230770 22317683 ~ 22322046 (+) True G31744
XR_004579714.1 lncRNA upstream 321801 22227215 ~ 22231015 (+) True LOC117599246
TU37666 lncRNA downstream 21737 22582349 ~ 22585190 (+) True G31944
TU37722 lncRNA downstream 248783 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 427509 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 617320 23177932 ~ 23187094 (+) True LOC113538428
TU38127 lncRNA downstream 895348 23455960 ~ 23458710 (+) False G32310
XM_026933453.2 mRNA upstream 78254 22426920 ~ 22474562 (+) True ghrhrb
XM_026933454.2 mRNA upstream 78254 22426920 ~ 22474562 (+) False ghrhrb
XM_026933381.2 mRNA upstream 146337 22392828 ~ 22406479 (+) True cyldl
XM_026933365.2 mRNA downstream 2627 22563239 ~ 22570318 (+) False nasp
XM_026933364.2 mRNA downstream 2628 22563240 ~ 22570318 (+) True nasp
XM_026933366.2 mRNA downstream 2631 22563243 ~ 22570318 (+) False nasp
XM_026933323.2 mRNA downstream 36983 22597595 ~ 22603436 (+) True tmem69
XM_026933321.2 mRNA downstream 37729 22598341 ~ 22603436 (+) False tmem69
TU36319 other upstream 1535369 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2442591 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3015802 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3725896 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 37729 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 915339 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1459766 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2092378 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2092573 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile