RNA id: XM_026933383.2


Basic Information

Item Value
RNA id XM_026933383.2
length 3520
RNA type mRNA
GC content 0.43
exon number 15
gene id cyldl
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22392828 ~ 22406479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGTAAACTaaatggtggtgatggtgtgggTAATGACATATATATCCAACGTTGATGCGTCAAATACGAACAAACCGCACCGTAGTGACAGATGACACAAACTTGCGAAAGTTGTTGTTGGAGAGACGACAGCGAGTAGGAAACTCAGAAAACCCCCAAAAATGTTTAGGGagcattgtttttttgtaatacGGACATAATGAATCTGTATTAAAGTCGGATTTGAAGACACCGCCGGATTGAAGAAATCGAAAGTAAACAAGGTGAAATCGGCTGTCTGGAGAAAACAGAAGGTAAAAGCAGGCGTCTCCTAACAGCAATGGCCTCCCGTGATAAAGCTTACGTCATCCTCACAAAAGCCAGTCAATCAGTCGGCTGGGTCAGAGCAGGAAGTATTTGCTACATAAAAGAGAATCTATATTCTCTAAACTACCAAAAGAAGGACACTGTACCTGTCATATGTATAGGTAGCAGTATAACTTATAATTTGCCGCTTGATATTCTGCAGCCATTGTCACGGCAAAAGTCCGAATTTCTCCTGGCAGTTGAAAGTTGTGAAGAGAGACTGAAGGAATTTACACAGTCTGAGGCTTTAGACCAAGCTATGGAACTGACTGTAGGCTCAGAAGTCACAGTGGCGCAGAATGGCGAGTGGCTTAAAGGTGTGATTAGATACATCGGCCCTCTCTCTGATCCAGGTGTACTGGATCCTATTGCAGGAGTATTTTTTGGAGTTGAACTGCAGGGAGAAGATAAGGGTAAAGGCCAGAGTGATGGAACCTACAGGTACAAATCCCACTTTAAATGTCAGAAAGATTGTGGCGTTTTTGTCCCTTTCACCAGAATCAGACCACTGCATCCCAAACTGTCAGCACCATGGGCTGGCATCCCAGAGAatctcacacagacactctcTGTTGGAGATCGCGTAACCTACATTCTTGATGATAAAAGCGACTGTCAGCATGGGATGGTCCTGAATCCTATGAAAGATGGCATGATTTTGATCTCAACGGACACGGATGAACATGGAAAggctggaggagagagagaaattccaTGGCACTGCGTTATTAAAGAGGAAGATTTAAATACAGgtAAACCAGAAAGGATGGATATTTCTGACAGTCCAGATATGGTTAAGGATCCAGGTGCTGATGTGGCTTTAAAAGTGGGCTCCGTGGTGGAGGTTAATCTGGCTAAAGGACCTGCCTTTGCAACAGTGCGTTGGATTGGCTCTCTTCCAGACAGACCTAGTAGAATGGCTGGCCTGGAACTGAAAGAGGCATGTGGGGTGAGTGACGGGACGTTCAAAGATGTTCGGTATTTCACATGTGCACCTAAGCACGGCCTCTTCGTGAAGGTGTCCTCTTGTCGGCCTGGTGATCGTTTCCTGGGAGAGACTGCAGTGAATGGACACTTTGGCCATGATGGACAGGATATACCAGCTGTCCCACCCCTGAGGTCTGAGGACGTGAAGACGGTACTGACTGGCACGATGAAGGGCATCCAGGGTCACTGTAACTCCTGTTACATGGACTCTGCCCTCTTTAGtttgttttcCTGCTCATCAGTACTGGACTCTCTTCTGTTTAAAAAGACTAAACCGAATGATGAACCCATCCAGAAAACTCTTCTGAGGGACATTGTGTGTCCTCTGCGCAGcaaggGTTTTGTCCCTGAGAAAAGTGTGATGAAGCTTCGGAAGCAGGTGCAGGAGCGAGGCCACTGTCCTAGCTACACCACGGATGAGAAAGATCCAGAAGAGTTTCTTACTCTCATCATGCAAGACATTCTGTCACTGGAGCCACTACTGAAACTGAAATCATGTAATCAGCCTAAAGGTTTAACAGAGATGGAGCAGACAAGTTACTTGTACCAAATCTTCATGGATTACAACCACAGTCTGGTTTTACCGACAGTTCAGCAGCTGCTAGAGCATTCTTTCTACAACAATGGCATCAAACTAGCAGAGGTGCCTTCTTGCCTGATCTTGACAATGCCTCGCTCTGGGAAGCAGTTTAAAATGTTTCCAAAAATCATTCCCTCGCTACAGCTAGATATCACTGCTCTTCTGTCCAACGgtcttcagcagtgtgtgttgtgtggacAGCTGGCCCATGTGGAGTGTAGCCAGTGCTTCACAGATTCAGTTTTCAGCAGTACAGGATTAAAGGTTTTCTGTGATATGTGTTCAACTCAGGTCCACTTTCACCCCAGCCGACAGTCTCATAAACCCACATCCCTGCGCTTCCCTGAAGGATTTCCTCACTCGTGCAGTCCTGGTAGTCTAGCACACACAGTTCCACAAGAAAAACTGGAACTGTTTGCCGTGCTCTGCATAGAGACCAGCCACTATGTTTCCTTTGTCAAATACGGACCAAAAATAACTGACTGGATCTTTTTTGATAGCATGGCTGACCGAGTGGGTGAGACTGATGGTTTCAACATTCCGGAGGTTAAAGCATGTCCGGAAGTGGCACGCTACCTCAGTATGCCTCTAGCTGAGCTGGCTAAGCAGGTTCCTCGTGAAATGGATGGTGTGGCAAAGAGACTCTTCTGTGATGGCTATATGTACCTATACCAGAGCCCCAGCATGGCCCTGTATCGCTGACACAATCAATCAGTACAAATGTctacacactcacccacacagcAAACAAACATTTTGAATTCAAGGAATACTGACATTCCTGTTAGTATACTAATGATTAATGCTGAAAGGTAAACTTTCCTCTCCGTGTTTTCTCCAAGCTTTCAGCTGATTGTTGGACTTTTGGGAGATGAAATAGCACATTACTTTTTGGATAATGCTTTTTGATACTAATAGGAAATACAGTATACTTACATAGACACAGTATACTTTGCATAGTGCCTTGAAACAAACATTGGACAtaattaatgcaaaatattgTTATCGCCGACTGTGAATTTTTAGTACCACCTTTTTATTCAGTTTCTAGGAAAGGATAATGTCTGATCCTATAAAACTCAAGAAATTTACTCTGAAAAGGGAAAGAGTGGCGATTTCTTTTACCAAGTCCAATAATTCCCGAGTTGCATTTATTGCCTTATTTCTTCATATgaggaatgtaatgtaatgttaatcACACAACATCCTGTTGTATCCAGAAAACACTGCCAGACCTGTACATATTGAGATCACCGAgactaaacaaatattataAACCGGTGCAATAGCCTGCTGTATATGTAATGGTACCGTTGCCatacaaatgaaagaaagtcaAGAATGAACAAAAACTGCTGTACATTTGCTGTTAAGCTGTGGTATTAATGAGATTCAACCATCTAAAGGAGGCATTCCTGTTTATGTTTTTGGTGGCATTGTGCCAATTTTTATTTGTGGAAGGGGTTGTGatccatggaaaaaaaaaaaaaaactgtgtgtcaCGAACATGCACTGAAATGTCTTCCTTACTTTGTGCATCTAATACAATCAGATGTTTCTCAGGGAAACTGCAATTTTTTGGGATCACTGATTTAATAAAGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37451 lncRNA upstream 67491 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 70782 22317683 ~ 22322046 (+) True G31744
XR_004579714.1 lncRNA upstream 161813 22227215 ~ 22231015 (+) True LOC117599246
XR_004579713.1 lncRNA upstream 171302 22220382 ~ 22221526 (+) True LOC117599245
TU37392 lncRNA upstream 204325 22182204 ~ 22188503 (+) True G31704
TU37560 lncRNA downstream 74925 22481404 ~ 22485447 (+) True G31856
TU37582 lncRNA downstream 98025 22504504 ~ 22514013 (+) True G31878
TU37666 lncRNA downstream 175870 22582349 ~ 22585190 (+) True G31944
TU37722 lncRNA downstream 402916 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 581642 22988121 ~ 23026499 (+) True LOC117599173
XM_034314532.1 mRNA upstream 273196 22109948 ~ 22119632 (+) True LOC117599931
XM_026917138.2 mRNA upstream 291723 22048516 ~ 22101105 (+) True kank4
XM_026917154.2 mRNA upstream 291723 22078733 ~ 22101105 (+) False kank4
XM_026917147.2 mRNA upstream 291723 22078774 ~ 22101105 (+) False kank4
XM_034313266.1 mRNA upstream 358738 21969974 ~ 22034090 (+) True dock7
XM_026933453.2 mRNA downstream 20441 22426920 ~ 22474562 (+) True ghrhrb
XM_026933454.2 mRNA downstream 20441 22426920 ~ 22474562 (+) False ghrhrb
XM_026933369.2 mRNA downstream 146337 22552816 ~ 22560612 (+) True akr1a1b
XM_026933365.2 mRNA downstream 156760 22563239 ~ 22570318 (+) False nasp
XM_026933364.2 mRNA downstream 156761 22563240 ~ 22570318 (+) True nasp
TU36319 other upstream 1375381 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2282603 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2855814 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3565908 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 191862 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1069472 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1613899 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2246511 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2246706 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile