RNA id: XR_004577321.1


Basic Information

Item Value
RNA id XR_004577321.1
length 4201
RNA type misc_RNA
GC content 0.43
exon number 3
gene id LOC113538393
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25900730 ~ 25907994 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatctttattttcttattatggCTAATGAGCTAACTTGAAACTTAAGAGGCTACTTTCTTCTTTGTGGTTGTTCCTTCATCTGCAACCCCCAAAGTGAGAACAGACAGAAGCACACAATGCGTTTGCAAAcagagaaaaggaaggaagatgaAAAATAAGGCAAGAGAAACCGAGATCTGTTACATACAGCGCTGATCACAGAATCCTGACAAGAAGACAGAACAAGAgtgcaaaataaattaataattaggAAGCGAAACTGTGGTTGGAAAAAGACTGAAGACTTTTTATACGACTTTTTAAGTGAACAAGGAGTATAACGCTTCATGGAGAGAAAGTCATATGCACTTTAAATGGTGGGCCCAAGTTATAGGTTGCctgaatatacacacaccactgtaccaAAAAGAGgacaaatgcataaaaaatgaCCACTGCTAACAGAACAGACATGCCGTCAAACAACTCTTTCATCCATCATACAGTCTCAGAACTCAATCATTCATGCTCTTTGGAAGAAGAAGCCCAGCGTGTGCCATTTGCCGTCCTGTATTCTCTCATCTTCCTGTTTGGCTTGGCAGGGAACCTGCTGGCCCTCTGGGTCTTCATCTTCCTCCACTCACGCCGCAACTCGGTCCGCATCTTCCTCATCAACGTGGCTCTGGCTGACCTAGTGCTTGTAGCCTGCCTGCCATTCCGCATCCTCTACCACATACTGGGCAACTACTGGCCCTTAGGGTCCAGGATGTGCAAGATTGTAGGCAACCTCTTCTATATGAACATGTATGTAAGCATCACCCTGCTGGGTCTCATCAGCCTGGACCGCTATGTCAAGATACATGGTTTGCCAGGAACACGGGCATCCTTCTTCCACCGCTGGCTGAAGGGGAACAGATGGAGTGTGGTGGCATGCAGTGTATTGTGGACAGCCTCGCTGCTAGCTGTGGTGCCTATGATTGCTCTGGCTGAGGGCAATGAGGAGCAGGGCAAGTGCTTCCAGTACAAGTCTCGAACACAAGCACGCAGTAAGGCATACTTTAACTTATTTATGGTGGGCGTTTTCTGGTTCGTGTTCTTGCTTATGTTGGTGTCATATGGACGGATTGCCTGGCGCCTTTTGCAAGCATCCTATAACAAGCCAGACCTGCCCAATGCAGGGCACTACTCCCGTGCTGCTAAGAAGTCCTTTGTGGTGCTTTTCCTGTTCACCATCTGCTTTGTGCCCTACCATGCCTTCAGGGGAGTGTATGTGCAGTCTCAACTAACGGAGACCCCCTGTGAGATGCGCCATCATATAGACCATGCCAATGAGGTTATGCTGCTCTTCTCAGCCCTCAACAGTTGTCTGGACCCCCTCATGTACTTTGTGTTGTCAGCTTCAGTGCGCAAGGCCACACTAAGTGCTATTTCCCGGGTGTTCTGTGTGTGCAACCACCCCGCCATCAACAGCTCTTCTACAGAGTTCCACCGGACATCTGTGTCCCAGGCTTCTATCACCGCACTAGCTAAACCCGAAAGTGTGGGGCTCATCACCATCCTAACGACCACCCATCCTAAAGACAATCCATAAGCTTGACTTTATGTAAACAGAGGTACaatatatggacaaaagtatgtggaggCCTGACCATCACATGTGTCCATGTTGCAACAaatccatgggcattaatatggagttcaTTCTTCACTCTCCTGGgatggctttccactagattttttaATGTGGCTGTGGCCTGTCATTCCACATTCTCTATCACATGCTGGGCAACTACTGGCCCTTAAAATTCAGCAAGTGCACCAACCTTGGGAAGcaatgtctttatggacctcacttttcGCAGGCCCCTTAACTAAGGCACCTTGgtgccagtgaagggaaatcataattcTACGACATACCAAGATAATCAAGACAACTGTGTGTCTCCAACATTGTGACGACAGTTTGGGGAatgcccacatatgggtgtgatggtcagatgttcacatacttttggccatatagtgtatgaccTCCCAAAATATGGAAGCCTTAACATGAAGGAAAATGGCAAGACTCTTTAGACAATGATATCGTACAACAGATGGATTATGGTGGGGAATCAGTGCTCAGTCAGTCTCAAAGCTTGAAGATCCTCACAAGTCAAAAGGACTCTATTATATGGATTATAGCAGCATTTCTTTCAGACATTACAATATTCCAATATCATAAGAGAAAAATAAGATGGTGCAGGTCTGTGTCCAGTGTGCAAATGGAGCCCAACTGCCCATCTGTGCTAACCCTGAGGTAAGTCTCTGACAGTAATCCCACTTTAGTCACAGATGTCTGTCTCATCAGAAGGAGATTTATCTGGCTGTTTTACAGTACTTCTCTACTCTacatacttcacacacacacacacacacacacacacacacacacagaatatttTGCTCTGTAGTAGTGCATCATGTTTTAAATTGAATCAATTTCAATTTGTCTGAGTGGCCATGTAAAACATTAACAGGGCCccagagtggtgcaacagaaaaacattCCCCTATTTTAGGGAGATCAggcctccaagtgtgttacgctgccctatGACACAGCAGGAGCAGCATGGTTGGCAGGTTGTCTTTGCATGTCTCTGAGGAACCACATGTTCGTTCTTCTGTCCCCAGTTGACAGTTGTTGTGTGAAaggggagagttagctagtgggtgggaactggcaagaccaaattggggagaaaatgggggaacaaatgaaaagaaacacattGACATGACCTTCAGTTAAGTTTTTCTCTAGTTTATGAATAGCTCTTTTTTTAAGTGGAGTGCTGGAATTCTAGTAGTGATCTTTAGAACTCTTGCAGACCACGTTAAGGAATGTGTGAATGCTCTTCTTAAAAGCAAAAGAGTGTGTTTCATTTCAGAAGACAAAAAACTGTACTGTTAAATGAATCACAAACATTCAATGTGCAAaggtgcacatgcacacacattctacCACACACAGGATGCGATGTctcaaaataacacaaaatatccACCAAAAGGATGTGGTTATGGTCAGTATTGCAAAAACATATATATCTAGACTGTGATCATCAGCAGTTGTTCAAGGAACTAAATAACTGCTGAAAACATGCACATACGTGGTTAAGAGCCCCTTCACCTATACAGATGTTATGCTGTGACCCATTTCAAAACTGTTTCACTCTTGGTGAAGGGGGGTGGGTGGAGCACTTCAGAAGGGCTACtgtggtggacactccacatgaTCCAAGCataaagcataataataaatgggtGAGGGAACAacattttatagcatttataacataagtgataaccaAAAGCAacttatttcacacacattccacaacattaaatataactgtaaatgtaataaaaagctttaattgctggcaaattgctaaACTTTATGTTGGGCCACATCACTCAAACCATCCATtacttattttcttataaccaTATGCCCCACTGTGTTTCTTTAGTTATGGCAATTTCGTCCTGGTAAATTCATCTCTTGACACCCACATGTCAAAAACACATATGCAAGGGCTACAGTACTGACTGCGTagcaaacagattaataaaGGGAACAGTCGTACCTTGACATCTCGGTGAATAACATTGTTGTCATGGCAGTAGCGCAGTGCTTCTAATATCTGACGCATGTAGTGGCTAAGGGTGGTGAGAAAGATAAAGTGAGAAAGAGTTTTAGACTGTACACAGATTTGCCACACAGAATCATCCAGGAAACAAGAGGGATATGGCTACATACCTGGCCACAGCCTCACTATAGACAAAACCTGCATCTGCCCTCTTCACAATCTCAAAACAAAGATCTGCCCCATCCATACTACAAgcagaagagaaataaagagttagaaaaaatccattttaaacacatcatGCCAATTACCaagagcaagacagagacacagacagacagacacttaCAACTCAAAAACCATATAGAGCATTCCATCTGAGCTGTATGTTTCCAGGAGTTCTACAATGTGAGGATGCTTCAGCATGTGACAGATACTAGCCTCTCGCTTCAGATCTgtacaggaaaaaaagacaggatgCACATTACTATCATCAGTTATCATATCATACTATCatcaatatcattaaaaaaaagatcatagTTTGCAAATTTCACACCTTCCGGGTCTTCAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39514 lncRNA downstream 57398 25837298 ~ 25843332 (-) True G33538
TU39470 lncRNA downstream 115850 25710231 ~ 25784880 (-) True G33508
TU39472 lncRNA downstream 161956 25732298 ~ 25738774 (-) False nbeal1
XR_004579559.1 lncRNA downstream 238766 25658315 ~ 25661964 (-) True LOC117599130
TU39435 lncRNA downstream 239039 25660913 ~ 25661691 (-) False LOC117599130
TU39625 lncRNA upstream 169381 26077375 ~ 26077901 (-) True G33621
TU39619 lncRNA upstream 181384 26089378 ~ 26109660 (-) True G33617
TU39620 lncRNA upstream 181384 26089378 ~ 26106225 (-) False G33617
TU39654 lncRNA upstream 314469 26222463 ~ 26227188 (-) True G33645
TU39710 lncRNA upstream 331473 26239467 ~ 26242883 (-) True G33697
XM_026933421.2 mRNA downstream 82944 25811886 ~ 25817786 (-) True LOC113538391
XM_034312676.1 mRNA downstream 87552 25795228 ~ 25813178 (-) False trim25l
XM_034312679.1 mRNA downstream 89023 25795226 ~ 25811707 (-) False trim25l
XM_026933419.2 mRNA downstream 89023 25795227 ~ 25811707 (-) False trim25l
XM_026933420.2 mRNA downstream 89023 25795228 ~ 25811707 (-) False trim25l
XM_026933130.2 mRNA upstream 152461 26060455 ~ 26068892 (-) True gpr180
XM_026933605.2 mRNA upstream 178816 26086810 ~ 26105456 (-) False slc19a1
XM_034310195.1 mRNA upstream 182893 26090887 ~ 26105675 (-) False slc19a1
XM_034310194.1 mRNA upstream 182893 26090887 ~ 26105455 (-) False slc19a1
XM_026933604.2 mRNA upstream 182893 26090887 ~ 26105455 (-) True slc19a1
XR_003403848.2 other downstream 2268717 23616157 ~ 23632013 (-) False uap1
XR_004580163.1 other downstream 4369302 21463861 ~ 21531428 (-) False raver2
XR_003403851.2 other upstream 173155 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 722835 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 731839 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39866 other upstream 731839 26639833 ~ 26649379 (-) False si:ch73-23l24.1
TU39867 other upstream 731839 26639833 ~ 26649379 (-) True si:ch73-23l24.1

Expression Profile