RNA id: XM_026933496.2


Basic Information

Item Value
RNA id XM_026933496.2
length 3819
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC113538433
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 24558933 ~ 24567675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTTTGTTAACTTGAAAGTGAAGCACACATCTAAACTGTTTAAAAGATAAGGGTGGAAACTTAACAGGAgtcaaaagtgaaaagaagaCCACATATCTGTGAAAAGTCAACTGCCTAAGAAGACCATGGAGCTGGGGCAGTATATAATTATTGGTATTTGTGCTGTAAATGTGGTTTGGGGATGCCCCCAGCAATGCCACTGCAAAGACAATGCTACTTCTTGCATGGGCTATAGCATTAAAGACTTTCCATCCCCTATTCCATCAACAACAAAGTCTATACACATTTCATATACAAACATATCTTCACTGAAACCTGCTGATTTTGATGCATTTTCTGAAACTCTGACAAAAATCACAATCAATAATTCGAGGATAAATGAGGTACGACGTCACACATTTGACAAGACACACAAACTCACCACTATAGTGTGTTCAGGAACTGAGTTGGTTTCTCTACCAGAGGACTTGTTTCAGAAACTACGCTCTCTCACCTTTCTGATGCTGAGCAACAACAAACTAAATGAACTCCCTCCATCCCTGCTAACATCTCTTCAGTCTCTGAAAATCTTAGACTTAAGCAAAAACAACTTGAGTTCTATTCCAGAGAATGCGTTTCAGGATCTAATTCACTTGGAGAAGCTTATACTGCAGAGAAATGGCATCAGACAATTGCAGAATGGAACTTTCCATGGACTTACCAAGCTTAAAATCTTGTCCCTTCAAAATAACAACCTAAAGGTGATCCCAGGCAATGCATTTGAGGACCTGGTAAATCTGGAGACCTTGCATCTGCAGAACAATGTTATCACATATTTACCAGCAGAACTTTTTGGACATCAGCAGAAGCTCCAGAAACTCTACCTCTCTAATAATCAGTTGTCTTTCCTTCCTGAAGGCATCTTCTTGAAACTCCCTAATCTACAGCGGATCTCACTTTACGACAACCAGCTGCAGAGTCTATCTATTAACACCTTTGGGCCCATGTTACTGCAGGACCTGTGGCTGTATGACAACATGTTAACCCGGCTTGAGGAAAATGTATTTAGCAATTTAACTCATGTGCAACTTCTGGTGCTGACCAGAAACCAGATCTCACATATCTCTCCTGGTGCATTCAATGGATTGAATGAGCTGCAAGAAATTTCTTTGCACACTAATTGCCTGACGAGCCTTGACGAAAGAGTGTTCAGAGGCCTTCCAAAGTTGGTCAAAATATCAttggaaaataacaaaattcatTCCATTCCAGAGAAGCTGCTTGATGGTATTCATTACTTATACCAGCTGGAGCTTCAAAACAACTCTCTATCGTCTTTACCAAAGACATTTCTAGACTCATTAACCAACGTTGGCAGTGTGGTGTTAACTGAAAATCCATGGAGATGTGACCATGGCATTGTACCTCTTCAAGACTGGTTAAAGAAATATCCAGATAAAGTAAAAAATGTCACATCTGTTGTGTGCTTTAGTCCGTTAGACTTGAGAAACATCAGTATAATAAACCTTTTCAGTCATCCCCTTCCCACACCCACATTTACACCCTCAGATAACTCAGCAGTACTCTTTGAGAAAGCAGAGCTCATCATTGGTTCACTGGAAATGCATATGATCATCACTGCAGTAGTCTGCACTGTAGCCATTGTTAGTATTATCATCTGTGTTGTCTGCTGGAGGCGGAACAAACAGGACAGTcaaaaaactgtaatataatgtaGAGTTACTAAAACAAATGTATGTGGTAACCCCTGGGATGATATCATATAAGATCTTGTATTCAATATAAAATAAGTACTCATTTTAAATTGCTTGTTGCTAATAGCCTTTCCAAAATTTAACACTACTGGAAGGAGTTCAAAtgctttataaaatgtaaatggttAAATATAACCTTCTCATTTTTATAACAGAATTCTGGgtaaaaatttgttttgtttaatgtagATTCTCTACAAACAGTCAAAAAATATCTATAGACTGTTAACAACCTATCAGTTAATTAACTAAAGTAAGAAACTACAGGGCACAAGTTTATGTTTGCTGATGTTagatattatatacacactctATAGATTACTCTATAGATTTGAAAGGCCAATCAATCATGTCTTTAAAAGAAGACCAACTGACATGTCCCACAACTTGCCATTACAACCACTATGACCATTCCAAAAACTACCACCACATAAGAAACCACTCAGCCTGCAACTACACCATCAACCACTTCCTCTTCTACAACAGACGACAACAGAAAGCCTTACAACAATCACAACTTCAACCACAGTATCCACCACTATAGCAACAACCACACCACCAACTACTCCAACCACAGAACCAACCACTGCATCTACAGCTTTAACCATCTCAGTGAGAACAGTTGCAACTCCAGAGGCCACAactactacacactgtacaacacgCACAATAAGGAAAACAACACCAGCCTCCACAGCCCCAGGACATTTCTCTGTAGCAGTTACACCAACTCTCAGCATCCCTCTCCTTGCATGTTCTCTGTTTGTTACTGTATGTAGTAGCATATGGAgatgctataaaataagatcatgcatttaacataaaatatgcACTAATTTAAAAGTACTTCTTGACAGTAGCCTTTCACAAAACGGAAAGAttggcacaggttttttttattatttttttaaggcttGCTGTGTTTAAACAATAGGGAacaaagttattttttatttcttttttatttctttttttttttggtacctAAGTTCTAGGTACTAGCCAGCTAAGCAGGGTCACTAGTTATTTTAAGTGGAACAACAATTTAATTTGACAAAAGTGCCTGACAGGTTATTaagtatttacaaaaaatatatatattttacattttattttaccacAAGTATAAGCAGTAAACTGGAAAAGCCTCAAAATACTGGAAAGTTATTTATCCTAACAAATACATATGAGTCAAAACTTTTTGTAGAAAATTTAATGTGAATATAATTCTTTTCTTACTACCTTGTTACTCTAAATACATAATCAATGATGaggtattttattttctacatttctacttAATGACTTGTCAGGCATTGTGGTATGATTAAGTTGGTgcttattattgtattaaaaaagtTATCTATTTATCATATACAACATATCTATTATGTTTTTGATGTACCTTAGTTAAAGCATAATTGTAGCACTTTCTTATCCAGTTAATACATAGAgccaagtttaaaaaataaaagatgtttGTGCATGCTCCTGATTTAATgatacatacattatatttagtaaaacaaacacacacaaaacatagattttcaaatattttttcagacAATTAATGGCTGACTGTCAGGGATtaactgcaaaaacagaagcaagtgtgacagtcgaagtctccagaagaactgtgccAGGTTCTCCAAGATGGTTTAACAAAACttaccagccaatttccttataaaactgcacaaaatttACCTGAGACTACTCAggcatttttaaagacaaagcCTTGTCACACCAGATGTTGATTTTGTTTAGGTTAAACTGGTTACTGCTCCTTACAGAAGCTTTATTTATGTCGAAAACATTTACTTGTATTCTTTTTAAGGcatctttacagcatttctttacatgtgcctaagacttttgcatagtattgtgtatatattcGAAGAAAATGAATGCAGTAACATTGccttttcattttgtatatGCTTCTTAATACATATAAACTGTGTATATTTCTGTGTGGGTTGTTTATGCTGGTTTGCATGAGTCTATGAAATGGATTAAAGAAACTAACATGCTAATTGTACTGATCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38672 lncRNA upstream 224478 24334199 ~ 24334455 (+) True G32795
TU38656 lncRNA upstream 298556 24259993 ~ 24260377 (+) True G32782
TU38526 lncRNA upstream 614473 23944239 ~ 23944460 (+) True G32662
TU38351 lncRNA upstream 892000 23662954 ~ 23666933 (+) True LOC113538279
XR_003403831.2 lncRNA upstream 892433 23663008 ~ 23666500 (+) False LOC113538279
XR_004577268.1 lncRNA downstream 81343 24649018 ~ 24650283 (+) True LOC117596090
TU38761 lncRNA downstream 86714 24654389 ~ 24656248 (+) False LOC117598985
TU38763 lncRNA downstream 87975 24655650 ~ 24656248 (+) False LOC117598985
XR_004577233.1 lncRNA downstream 195752 24763427 ~ 24764691 (+) True LOC117596060
TU39043 lncRNA downstream 680171 25247846 ~ 25250585 (+) True G33148
XM_026933019.2 mRNA upstream 719343 23836334 ~ 23839590 (+) True rgs4
XM_026933151.2 mRNA upstream 905378 23633606 ~ 23653555 (+) True uhmk1
XM_026933126.2 mRNA upstream 1006989 23533178 ~ 23551944 (+) True il12rb2
XM_026933598.2 mRNA upstream 1028549 23511481 ~ 23530384 (+) False il23r
XM_034311017.1 mRNA downstream 900 24568575 ~ 24570619 (+) True LOC113538193
XM_026933575.2 mRNA downstream 8006 24575681 ~ 24588531 (+) True rtn4a
XM_034310175.1 mRNA downstream 85318 24652993 ~ 24656218 (+) True LOC117598985
XM_026933073.2 mRNA downstream 1189139 25756814 ~ 25784890 (+) True trak2
XM_026933074.2 mRNA downstream 1189139 25756814 ~ 25784890 (+) False trak2
TU38551 other upstream 537897 24020378 ~ 24021036 (+) True G32684
trnaf-gaa_16 other upstream 1082910 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 1956595 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 3541486 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 4448708 20110130 ~ 20110225 (+) True LOC113537321
TU38758 other downstream 85315 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 85510 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 2045975 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 2062919 26630594 ~ 26648369 (+) False st6gal2b
XR_003403829.2 other downstream 3202121 27769796 ~ 27787602 (+) False adam23a

Expression Profile