RNA id: XM_034300006.1


Basic Information

Item Value
RNA id XM_034300006.1
length 2374
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC113538473
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22547254 ~ 22552299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGATACGCAAGAATGAGATGCAGTCTGTTTGAAGAATATTATTGACATTTAtttcctaataataaatCCTTTTCCTCATCTCGCTAACTGGTCTGGGAAGGATAATGATCCTCTGGTGAAGAAAATGAAAGGTTTGTCTGTTTTCATGGCTATAGtacTGTCCTTATCATTGGCCAAACACAGAACGTCTGATgAACTTGTTCTGACTGCCTGGCCGAAGAGGCAGCACTTCTACCTCGGGGAATCCATCGTTCTGACATGTAAGGTAGAAGGGAACTCTTCAGCGGTGTGGAACTACAGTTGGTTTAGACACAACCTCAGTAATGCTTCTACCCCCAGCCCTGCTCACATAGTGAACCATCACACGTACAACATTTCAGCGCTGACCTATGAGGACAGTGGCACTTACTGGTGTACAGCTCAGGAACAGGGCAGAAATTCCACCCTCCTGAGGAACTCTTTAAATGTCACAGCAGCTGTAGATATCTCCAAAGATCACTCAGAGGAAGAAAACACCTTTCTAGGGGCCTGGGTCTGGGCCATCTGTGTCATTGTCATCATTCTGCTTCTAATCCCTATCACCTTTCTGCTCGTACCAAGCCTCAGAAAGAGATTAAAGTTGTTTTCAACATGCGGAGAGTATAGTGCCCATCAGGAAATGCCTAGAACCAAACAGGATGTGACAGAGATCCAGTGGGACCTGGCCTGGATGGAGATGACTAATCTGCTGGACAAGCCATATCCTGGCAGCTGAGCAGCTCTTAAACTATTTACATACTATTAGACTACTCATAATACAACAGTGCTTTGTTGTATGAGAAGGTAATGTTTATCAGAGAAGGTAAATGAGTATCAATGTATCCTCACGAAGCTGAAATGTGACAGTAAAGAAGAGCAAATAGTGAAAAACTAACCCAAGTCAATATTTAGTGTGACCACACTTTTCCTTGAAACGGATCACTTAATCAGATCACTTCAGTACACACTGTTATGCAGTCTTTTAAGAAAATTGGCTGGTAAGTTTTTCAAGCATCTTTTTTCTGAAGACTTTGGCTATCACTGATAATGTGCCgtaatgtattattttctttaacaccatacaaatatttctttgtaacataattttttttttgtaaaatgaataTTTGGAAACTTAAAATTTGTGATTTTCTCCTGAGCCAGTAATACAGAAGAcattaaaatctcaaaaaaattatataatctctaaaatattatcaaaatctcttttctgaaaaaaaaagagataacaaaagacaacaaaacttttaaaaaaattcaataaactTCACGCTTTGTGTATGTCAGGTAActgcataatgtgtgtgtgtggacacacacacacacacacacacacatatatatatatacatgttctattctattctattctattaggCAATCAAGCAATCagagttagaaaaaaaaagtgtctcatttttaaatataatttgttcTGTTCTTGCAGATCCACAAGACAACACTGCTTTAGCTCtcttcctgctctaacacacttgaAGTTGATCAGTGGCTTTATAAcaagcttttaatttttttaaaataagaaatgcagctttcgaaaaaaaaaaaaaaaaaaaaagcagttgtcAAGGTCACAAGGTCAAAAGGGTCATATATTCCTATCCCTAGCAAGACataaacacctacacacactcacatacaacctgttctgtgtttaaaaaacactAGAGGGCAGAGCTGGCATTATGAGATTGCCTGTTGTTGTTTTGTCCAGCCTTCATGCGACAGtcagatttaataaaaacaccTTTGCACTGTGATCAGAGCAATATCATGATAATGCATTATAGTAGTGATAAATCTGATAGGATTCTTACAGTCAGGTTAAcaaaagagtgtgagagaaaacTGTGACTCTAACagtatttttcttatttttattgctCTGTTCTCGAAGCgtggttgtttttgttttatatggTAGAGCTTTGTCTCAATGGCTAGTGGTTGAGTGGTCTGTGTATCACAGCTCATTGCCttacagcattacagcattacagaAGGCAACATTAGGTGctgttttataaatattgtaagGCAGAAACATGGACAGGACAACCCTTAGGCAAGAAATAGGCTTCTGCTGCTCTTGTGCTTTCTTCCACACTTTATTGATTCTTCCTGGTGCCACACTCCTTCTCCACACAGCCTTAATTACAGCAGTGTGCAGTAATCTTTCACCTTCCCATTCCTCTGTTATTCCCCTTCTCTTCTCCTAGAGGGCAGACTGTAATTGTGCATGCGCATTTTCACAACCATGCTTCATTGTCTGGGGCCTGCTGATTCTaaggagagaacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37446 lncRNA downstream 231248 22315806 ~ 22316006 (-) True G31755
TU37433 lncRNA downstream 320594 22224385 ~ 22226660 (-) True G31742
XR_004579710.1 lncRNA downstream 349586 22196594 ~ 22197668 (-) True LOC117599242
XR_004579711.1 lncRNA downstream 371514 22173351 ~ 22175740 (-) True LOC117599244
XR_004577195.1 lncRNA downstream 414556 22130425 ~ 22132698 (-) True LOC117596032
TU37647 lncRNA upstream 13179 22565292 ~ 22568836 (-) True G31934
TU37648 lncRNA upstream 13179 22565292 ~ 22568836 (-) False G31934
TU37658 lncRNA upstream 25518 22577631 ~ 22577835 (-) False ccdc17
TU37680 lncRNA upstream 30235 22582348 ~ 22585190 (-) False gpbp1l1
TU37952 lncRNA upstream 159100 22711213 ~ 22785690 (-) True G32157
XM_026933520.2 mRNA downstream 33196 22484092 ~ 22514058 (-) True adcyap1r1b
XM_034311946.1 mRNA downstream 154461 22390253 ~ 22392793 (-) True LOC117599264
XM_034311953.1 mRNA downstream 156699 22327455 ~ 22390555 (-) True zc3h3
XM_034300900.1 mRNA downstream 225204 22319135 ~ 22322050 (-) True mafaa
XM_034314538.1 mRNA downstream 347620 22157708 ~ 22199634 (-) True LOC117599932
XM_026933625.2 mRNA upstream 20319 22572432 ~ 22581943 (-) True ccdc17
XM_026933319.2 mRNA upstream 30190 22582303 ~ 22593861 (-) True gpbp1l1
XM_034312142.1 mRNA upstream 221013 22773126 ~ 22964855 (-) False pik3r3b
XM_034312138.1 mRNA upstream 221013 22773126 ~ 22964855 (-) False pik3r3b
XM_026933188.2 mRNA upstream 221013 22773126 ~ 22964855 (-) True pik3r3b
XR_004580163.1 other downstream 1015826 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1064044 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3348617 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 3529036 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4078716 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4087720 26639833 ~ 26649379 (-) False si:ch73-23l24.1