RNA id: XM_034300927.1


Basic Information

Item Value
RNA id XM_034300927.1
length 6469
RNA type mRNA
GC content 0.52
exon number 28
gene id mast2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22604981 ~ 22727448 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atcatcacagctGTATGGACTGGCACATGATCATGGTCTTAAGACAGAAGTGACTTGAGTCTGTCGAGAGTTCTTTAGTCTTGCTGCCTGATTCGTCACCATGTCAGGCatgaagaaaaggagagagagagcaggagcacCCAACCTGCGCATACAAATCTGGCCAACGGCTCAGTTccgttgccatggcaacagcagCCTCCTGCAGCACCTCCTCAGCCCCAcatctttctcttcctcctcttcctctcctctccgcCTGTCACACGGTGGAGGGCCAGAAGAGGCCGTCTATGCCCCGGGCCCTGCCTCTGCCCCAGCTCTTGGCCTCGGCTCCCCCAACCCCTTCTTCTGGAGttgtCGGACGAGCAACAGGAAGAGCCTGATAGTGACTTCCAGCACCTCTCCCACTCTACCCAGACCTCACTCACCACTACACGGACATACTGGGAGCAGCCCACTGGACAGCCCACGCAATTTCTCCCCCAACACTGCAGCCCACTTCTCCTTCGTGCCCGCCCGCAGTCACGGGCACAGGACTGACAGGACGGATGGCCGGCGCTGGTCTCTTGCCTCACTGCCCTCTTCAGGGTACGGAACCAACACTCCCAGCTCAACAGTCTCATCATCATGTTCATCCCAGGAGAAGCTGCACCAGCTGCCCTTCCAGCCCACCGCAGACGAGCTGCACTTCCTCACCAAGCACTTCAGCTCCGAGAGCATCACTGACGAAGAGGGCAGGAGATCGCCAGCCATGCGGCCGCGTTCCCGCAGCCTCAGcccTGGGCGCTCTCCCATATCTTTCGACCATGAGATCGTCATGATGAACCATGTTTACAAAGAGCGTTTCCCGAAGGCCACGGCTCAGATGGAGGAGCGTCTGGCCGAGTTCCTGTCCTCCTCAGCTCCAGAGAAGGTCATGCATCTGGCTGATGGTGTCTTGAGCTTCATCCACCACCAGGTGATTGAGCTGTCCCGAGACTGCCTGGAGAAATCACGTGAGGGGCTCATCACTTCCCGCTACTTCTATGAGCtgcaggagaacctggagaaactGCTGCAGGATGCTCATGAGCGTTCAGAGAGTGTGGAGGTGACCTTCGTCACCCAGCTCATTAAGAGGCTGATGATCATCATCGCTCGGCCTGCCCGGCTGCTAGAGTGTCTGGAATTTGATCCTGAGGAGTTCTATCACCTGCTGGAAGCTGCAGAAGGCCATGCAAAAGAAGGCCAGGGAATCAAATCAGACATCCCTCGTTACATCATCAGTCAGCTGGGTCTTACTAGAGACCCCTTGGAAGAAATGGCCCAGCTGACCAGTTATGACAGTGGAAACTCAGAAACACCGGAGACTGAATGCAGCGCTGACTCCTCTGATAGTCGAGGTGCTATGGTACAGCCACCTCAGCCACAGCATAAGACCAAAACACCAAGAGAAGAGGACTTTGAGACCATCAAACTCATCAGTAATGGAGCTTACGGGGCTGTGTTTTTGGTGAGGCATAAGGAGACACGTCAGCGTTTTGCCATGAAAAAGATCAACAAGCAGAACTTGATTCTGAGGAACCAGATCCAGCAAGCGTTTGTGGAGAGGGACATCCTCACGTTTGCTGAGAATCCATTTGTCGTCAGCTTTTTCTGCTCCTTCGAGACGCGCAGACACCTCTGCATGGTCATGGAGTATGTGGAGGGTGGGGACTGTGCCACTCTACTAAAGAACATCGGCGCTCTGCCTGTGGATATGGCACGCATGTACTTTGCTGAAACTGTTCTGGCACTGGAATACCTGCACAACTATGGCATTGTACACCGTGACCTCAAACCTGACAATCTTCTAATCACTTCAATGGGACACATCAAACTGACAGACTTTGGCCTGTCAAAGGTTGGCCTTATGAGTCTCACCACTAACCTGTATGAGGGCCACATTGAGAAAGACGCACGCGAGTTCTTAGATAAACAgGTGTGTGGGACACCTGAATATATCGCCCCGGAGGTGATACTCAGACAGGGTTATGGGAAACCAGTGGACTGGTGGGCCATGGGAGTCATCCTGTACGAGTTTTTGGTGGGCTGTGCTCCTTTCTTCGGAGACACCCCCGAGGAACTGTTTGGACAAGTCATCAGCGATGAGATAGTGTGGCCTGAGGGGGATGAAGCTCTACCACCAGACGCTCAAGACCTCATCTCTAAACTGCTCCGACAAAACCCACTGGAGCGATTGGGAACAGGAAGCGCGTTTGAGGTGAAGCAGCACAGGTTTTTCATTGATCTGGACTGGAACAGTCTCCTGAGGCAGAAAGCTGAGTTCATCCCTCAGCTCGAGTCTGAGGAGGATACCAGCTACTTTGACACTCGCTCAGACAGGTATCACCATGTGGActctgaggaagaggaggatacAAATGATGATGAGCATGTGGAGATCCGCCAGTTCTCCTCCTGCTCCCCACGATTTAACAAGGTGTACAGCAGTATGGAGCGTCTGTCCTTGCATGAGGAGAAGCGCACTCCTCCTCCCACCAAGCGCAGTCTCAGTGAGGAGGGCGCCGAGCGACTCAACAGTCTCAGCAGCCTCAAGTCTCGGGACCGCACCTGGATGGTGGGCTCACCTGAAATCCTGCGTAAACGCCTGTCAGTGTCCGAGTCTTCACACACCGAGAGCGACTCCAGCCCCCCTCTAACGGTTCGCCGGCGCTGCTGCTCTGCAATCATTGAAATGCCTCGGTTCGCTATCTCCACCGAGGAGGAGAGTGCCAGGAAAACTCCAATCAGGGCTCAGCGCAGTGAAGAGCTCCCTTCTGCTATCCCAGAACTCCCAGTGGAGAGGGAGCTCCGACTGGATGAGTCTCCCATCACACCAGCCTCCACTTCCAGCCAAGCCACCCGCGGCACACTCACACCTGGCAGTTGTGGCGATTCCGTGGATCGAGGATCTCCTCGCAGCAGCAATAATGAGGGAGCAGATAATTCCACTCCTAAAGCCATCAGCGATCTGGCAGTCCGTCGAGCTCGCCATAGACTGCTATCaggagacacagagaaacacacgtCACGGCCACTCAACAAGGTCATCAAATCAGCCTCGGCCACTGCACTGTCGCTCATGATTCCTACAGAGCACCACGGCGCCTCTCCTTTGGCCAGCCCCATGTCTCCTCACTCCCTGTCCTCCAATCCATCGTCTCGGGACTCATCTCCCAGCAGGGACCTATCACCGGCTGTTTGCAGCGTGAAACCTGCCATCGTTATCCATCGAGCAGGCAAGAAATATGGCTTCACGTTGCGCGCCATCCGTGTCTACATGGGAGACACTGATATCTACACTGTACACCATATGGTCTGGCATGTGGAGGAGGGAGGACCAGCTCATGAAGCAGGTCTAAGAGAGGGAGACCTCATCACACATGTTAATGGAGAACCGGTCCATGGCCTTGTTCACACAGAGGTTGTGGAGCTCATTCTCAAgAGTGGAAATAAGGTGTCTATATCAGCCACTCCCTTTGAGAACACATCCATTAAGGTTGGTCCAGCTCGTAAAAGCAGCCACAAGTCTAAAATGGCTCGGCGCAACAAAAAGACCAAAACAAGAGAGGGACAGGACAGTAAGAAAAAGAACTCCCTATTTCGGAAGATCACTAAGCAGGCATCTCTCCTGCACACCAGTCGCAGCTTGTCATCTCTGAATCGTTCGGTGTCATCGGGTGAGAGTGTGCCTGGATCTCCCACACACATGTCCCCCCGCTCCCCAACACAGGGCTACCGCTCCACACCGGATTCAGCCCATTCTGTTGGGGGAAATTCATCTCAGAGCAGCTCTCCCAGCTCCAGCGTGCCAAACTCTCCTGCCAGCTCTGGTCAGATCAGGCCCAGTTCCCTTCACGGCCTGGCCCCAAAGCTGCAGCGCCAGTACCGCTCCCCTCGGCGCAAGTCTGCTGGTAACATTCCCCTGTCACCGCTAGCCCGTACTCCCTCACCCACGCCCCAGAGCACCTCCCCTCAGCGCTCCCCTTCTCCACTGCCCAGCCATGCACTCCTGAGCTCCTCCATTGGTCAGTCCTTTCCTGTAAAACTACACTCTTCGCCTCCACTAGTGCGCCAGATTGCTCGTCCAAAGAGTGCTGACCCGCCTCGCTCCCCTCTGCTGAAACGTGTGCAGTCAGCTGAGAAACTGGCAGCCTCACTCTCATCATCCTCCTCGTCTCCCTCTCCTTCATCTGCTGCCGATAAAAAGCTGCCGGTGTGCGCCGGCCGCAAGCACAGTCTGGAACTCTCGCACACAGAATTTAAGAAGGAGATGCTCCAGCGGGAGCCAAGTTTACAGAGCTTGCAGGAGTGCGCTAGTGAGACTCTTCTGGGAGGGAGGGTGTCTCCAGCAGAAAAGGGCACTCTGCAGAAGCCTTTAGCACGTAAGCTAGGTCGGCAGGAAGGTCCTgactctgcaactggatccttaGGGCTGGCTCCTGGTAAGAGCAAGCTGAAGGACAAGCTGTCAGCTATCCGGCAGGACCGTGCCGAACGCAGAGAGTCTCTGCAGAAGCAGGATGCCATCCATGAAGTGGATTCCTCTGAGGATGAAACAGATGAGGGTTCAGAGGACAGCCAAGATGGACGCAGGACAACTTTTGTCCCTCCTAGCCATGTGCTTCGGCCTACAAGTGTGATAGGATCCCCACATATCAGGACAGGGCCAGCTGCTTTAACTACTCTGTCTCTGACCCCATGCCCAGTGGCTCAGTCCGGCTCTCCTCAGCTCAGCCAAGGTCTACAGGCCCAAAACCAGACGCAAGCCCAACCTCCATTGCTGGCAGCTAACGGCTCTGAGCAAAAACCCACCCAGACCCTGATATCTACTCCCTCTGCTGCCTCTACCTCAGCACTACCAGAAAATTCCAGCGAGAGACGGGGAAAGGTTCAGGATTCTGTGTCGAGCAGTAAAACACCTGGTCCTCAACCCAGTTCTCTGTCCAGCACTTTTTCTACACCTGGTAGCGCATTTACCACTGTCAGCAAGGACCCTTTTGTCAAACCCTCAGCGCCCCCTCCAGACCATAGGACTGCCAAAGTGAACAGCAAGCAAGAACCAAGCACAGTGCCTGTCATAACCCGGGAACCCCAAAACCCTACTCCACCAACTGGAGGCATCACGAAGGAGATGAAGGAGGCAGACAACCGGAGACAAGCAGCCGCTGCTGCCGCTGCTGCAGTatcctcctccccctccacaGCAGCTGAGAGTGGAGTGGATAAAGTGGTTTCCCAGCTGGCCACAGTGGCCAAGAGCATGCTAGGGCCAGTAAAGCTCAACATCCCAGGGACCAAGGAGGCCCGACCCCAGGCAGACATGGTGCACCCAAAAAGCAAAGATCCACATTTGAACAGTACTCGTTCTCCTGAAAAGACATTTCCATCTGTTGCTTCTGTCTCCCAAACAGGGCAGCAGTCTGAATCCCCCACTCGACAGTTTTCTGCAATATCTGAGTTACCTTCAACTTCACAGAGGTTCCAGGAGACTGCAGGAACTTCAAAGAGGCCTTCCACCCCAAAAGACAGCTCGTCAGGCCCAGGAGAATCCCAGGAGAGGCCAGGAACTCCACGGAGCAGTGCCTCTCAGAGGCCCAGTCCTGAAGCGCATTCCCAGAGCCAGGCTAAACCCAGTTCCTCCACACAGCAAGACAAATCCAGCAAGAAGACATAGCAGCCTTGCACAGAAAGAAATGACAACTCACCTAACATGcatgttgaaaaataaaaaatgtacttcACACTAACCGAGAGAGGAGAGAAACGAAAGAAGAAAATTCAAGCAAAGGAGCTCAGCAGCTTCATTGTGGATTGTTCTGTATTGAGGGATTTggattgcttttattttctcctttacCACTTTTCTCAGCATTGTTTTATtaagttcaggaaaaaaaagaaaatatgggGCTAGAAATAAACCATTTGAAAGACAAAAATTGTAACATTCAATGTGTGTTCACTTGAATATTAGGTTCTCactttatttgctgttttaGATCTAGTGGTGCCTTAATATAAACTTAAAAGTCCTCACTTGTAAGTCCTTTTGCCATTCATTGATGGAGGTAAGATGTATCTCAGCAATAAAATCAGCGTATGCTTAGCAATTTCTATTAATGTAGTAGAATCCTGCGTTAGGTTGGCTGAAAACCACCACTACATTTTCCATCATTTGCTATTTTATTGATGACAGGTTGAGTACTGTACAAATTGTATGTCTGATTTCTGATGAATCTGGAATATTACACACTTCTCAGTAGTGCTAAAATTAATTATGGTTTATTGTGTGGTTTATTTCCACAAAAGAGcctataataatatttaagacAGGTTTCCCAGGTAAGAACAAAAGGTTAAATTagatgtgtgattaaaaaaaaaaaaatcacatctgtCATTTTTTCATCTTGTCTTTTTTCAAGTTGCTTAGCTGTAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37666 lncRNA upstream 97042 22582349 ~ 22585190 (+) True G31944
TU37582 lncRNA upstream 168219 22504504 ~ 22514013 (+) True G31878
TU37560 lncRNA upstream 196785 22481404 ~ 22485447 (+) True G31856
TU37451 lncRNA upstream 356895 22325121 ~ 22325337 (+) True G31760
TU37435 lncRNA upstream 360186 22317683 ~ 22322046 (+) True G31744
TU37722 lncRNA downstream 81947 22809395 ~ 22811006 (+) True G31979
XR_004579611.1 lncRNA downstream 260673 22988121 ~ 23026499 (+) True LOC117599173
XR_003403844.2 lncRNA downstream 450484 23177932 ~ 23187094 (+) True LOC113538428
TU38127 lncRNA downstream 728512 23455960 ~ 23458710 (+) False G32310
TU38129 lncRNA downstream 728622 23456070 ~ 23459381 (+) True G32310
XM_026933323.2 mRNA upstream 78796 22597595 ~ 22603436 (+) True tmem69
XM_026933321.2 mRNA upstream 78796 22598341 ~ 22603436 (+) False tmem69
XM_026933322.2 mRNA upstream 78796 22598342 ~ 22603436 (+) False tmem69
XM_026933320.2 mRNA upstream 78796 22600830 ~ 22603436 (+) False tmem69
XM_026933366.2 mRNA upstream 111914 22563243 ~ 22570318 (+) False nasp
XM_034310314.1 mRNA downstream 300514 23027962 ~ 23043087 (+) False LOC113538154
XM_034310317.1 mRNA downstream 300514 23027962 ~ 23043087 (+) False LOC113538154
XM_026933025.2 mRNA downstream 300515 23027963 ~ 23045394 (+) True LOC113538154
XM_026933081.2 mRNA downstream 344673 23072121 ~ 23085157 (+) False orc1
XM_026933083.2 mRNA downstream 344673 23072121 ~ 23085157 (+) False orc1
XR_004579462.1 other upstream 79894 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 1664785 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 2572007 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3145218 19534441 ~ 19537014 (+) False smx5
trnai-aau other upstream 3864757 18817402 ~ 18817475 (+) True trnai-aau
trnaf-gaa_16 other downstream 748503 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1292930 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1925542 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1925737 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3886202 26613650 ~ 26629851 (+) False st6gal2b

Expression Profile