RNA id: XM_026933593.2


Basic Information

Item Value
RNA id XM_026933593.2
length 4177
RNA type mRNA
GC content 0.40
exon number 13
gene id il23r
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23495748 ~ 23530384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attttaatttcacacttGACGTGTTGAGGAGAAACGTAAAAGTGCTGTGGAAATATTACTGTTAGAACCTGTGATCTAACATATCTGTGTATTATCATGTGGTCACAGAATTTGCAAAACATCAGAAATTGTGGTTAATAGTCCTCCATTGTTATTGCTCATTGGACTATTGTTGATAGTCCTCCAGTAACTATAATTTTCATTAAGTGTTAGTCGGTTCTCACCCAGAAAACTATATGTTGACTGCACGTAGAGGTTGATAAAGTGGGACACTCATGTGCAAAGTCAGACTCTTAAAGttcaaacaaatataaaaaccaCAAAACTAGGTCACCTCCCCTAAAAAGAGAACACAGACTCTGAGAAAGTGCTAAACATTTTGCCTCTGAGCGAAATGACATCAGAGGACTGCACATGATGGTTGAGAAAACTCACAGTCTTGCTTAAAGTATTTAGGTTAtacttgcttcttttttttatcatacgTGACAGTCCAAGACACGTGGTTTTTCAATGCACATATGGGCCAGTCGAACAGAGCAAAGTCTGAGATGATCAGATTatcagaggaagaggaaaagcaGAGATATGAGAGTCAGCGAGAGAAAATCATGACACATGGATATCTTCACACAAGCCTTGCGACTTGTCCTTCTTTTACTACTCAACTGTGAGCTAAGGGACTGTTATAGAGTGGCATGTACTGGAGAGCTGACAGTAGATCAAGGCATCATTCCTATTGGCTCCAACCTGACTGTACACTGTCGATCTGACACTGTGAAATGTGGCAGGCTCTTCATCATAAAGTTTAATGGAAAGGAAGTTCTAagaaagaccagctgtttcaaTGTGACAGCACAAGTGGTTGTGAACGAACCAAAATCCTGGCTCTACTGTGCTGTGGAACAGGGAGGAAGGTCTCACATTGTGTGTGGACGGGACATCATGGCTAACcTGATTCCAAGTCCTCCACAAATTAAAGAGATTGCATTCGCAAAAGGCTCCCTTTCCCCCACCATCCACTGGTACAGCTCAGACGATATGGAGAATCTGAAACCCAGTCTGAGGTTTCGAAGAACATATGGTGCTTCAGGCTGGATGGAGGGAAATGTGACTCAGCTTCACAGTGGGACACTTGTATTGCCGGAGAAGTTGGAGCCGCTGACATTATATCAGTTTGAGCTCAGAGTCTGCACAGTTTCAATGAAGTATAACTGCAGCTTGTGGAGTGAGCTGCTCACTCAGAGAAGCCCTGGAAAAGCACCCTCGACCAAGCTCGATGTGTGGAGGATAATCATGAGAAATGAACAGAGCGACACTCAGAATGTGACTGTCATGTGGAAGCCTTTAGGTACAGAGGACTCCAAAGGAGTCTTGCACCATTATGAAATAGTCTATAAAGAGAAGGGCACTACACACATTCTGAATTGCTCATCGGCTGTTACGCAGTACACACTTCAGCTGCCCCTGGAGGTGACAGAGCTGAATGTCAGTGCAGTTACATCAGCAGGAAGTTCACCTCCAGCTTCAGTGAGACTGACCTGTTCAGCAGGCATACCATCTCCAGAAATAAACTCAAGCTATGCAGCAGGGGGCGGCATAACCCTTGTGTGGGACTCACCTCACTTCCCAGATAGGACTTCTGAGCAAATGCTGGGTTTTGTAGTTCAGTGGCAATGCACTCCACTTCAAGTGCAgtggaagagaaatgaaaagaacTACAACTCAGTATACATTCAGGCTACACAGTCATCTCTGTGTAACATTTCTCTCTATGTTGAGAGCAGTGACAGAGTGTCATGTCCTTCTATTAAACAAATCCATATGGCCAAGAAAgGCACTGACACAATACCCACAGATTTGGAGAAGAATAATATTGCCCCTCATATGAAGATCTTAAAAGTGCAATCTGCtccagaaaaaacaaaagATGGACTGGTAGTCGGGATTTGCCTCATAACCGCGGTtcctatcattattattgtgaaTCTAATGTACTTTAAATGTACACGACAAAGaataaGGAAGGCGTTTGTGTCAGTGGGACCCTCTTGGCTTTTTCAGAATTTACCTAAGCTTGGAAACAGCAATGCCATCAAATTACTGAAGGATGAGAGATGTGGTTCTGATCTGTGCTGGCAACCCGTGGACAACGACCCACCCTTATCTCCAGTTGAGGACTACAGTCCACCTGTGGAAAGGAAGGAATCGTACCCTATTGTACACAAAGAAGTAACCACAGAGGAGAGGACAGTTGTGCAAGACTGGACAGTCTGTCCATATAAACCTCAAATCACGATTTCTCAAGGAGCAGAAGTGGCGTGTGAGGTAATCGAGAAGGAAGAAGATGAGCCTCCTTGGGTGGTCTTCTCCTCGCCTGTCTTCAATACATTtgatcaacatttttttccaagtCAAGGAATACATGCACCTCTGCCAAGCTGCTTGACTGTGGATGGAAGACCTGTATCTATGGATCTTGTTGATGGATTTCCCTTTTTTACTCCGAGTGCTTTAGATGGAAACATGTGGACAGATGGGAGGTTTGCAGAAACTGGAAATGGTGATCAGAACCAGCACCAAAGCCAGACAGTGTTACCCAATGACCTGGTGAGGTGCTTGAAAGAGcctttttttaatgacagaCCTCCTTTGGCAGTCCAGAGAAGTCTGCACACTGTACAGGTTGACAAGCAGTCGTTCTAAAAAGTCTACAAAAACTGTTCACAACTGTAACTGTGTGAAAATCCTTGAGTGTGAAATTTCACGTTCCCTTACATCAGTcatgtgtaataaaatgtaaattatacaggaactgaaacaaacatttacattagCTGCTTGCTGGAGTTGAACTTATAACCTTCCAAGAAGGAGGCCAGAGCCCTAACCACTCAGCCACAGTCTTACAATTAAGTGCACCACAAACTAAATAGCCATCATGAGGTTCTTTATAGCAGCAGTGTGCACCAGTGATCACcagaggttttttgttttttgttttttttgttacagtgttgGCAGTCAAAACCCCCATCacaatttacagtatatttgttactgagttcttatagttattagccagtTTAACAGATCACTTGAATACagtgagtttaatccaaacttgaataactcaaaaacaagtagggcTATAAAGAATGACAACTTGGATaaaatgtgctgtgtgtgtgcggaaCATTCAAGAATGAAAAGCCATTTGACTCCAATAAATAGCTAGAAAATATTAAGTAGCCTAAGATTTGAATAGTTACTGTAGATTATGCTgataaaagaaatatttgaatagttacTGTAGATTATGCTGATAAAAGAAATCTGTGCTGAGGAagtctgtgtattttattgtaaagtccctggctgcaaaaaaatTGAGAACCCTAGTGAAactggtataaaaaaaaagtcgcactGATTTTAAGCAttaatgtctgttttttaataattgataGAGCTACAATACTCCACACAAGTCCTACAAATGAATTAGAAGACTAAGATTATTAACAGGAGGAAGTACATGAATGATTTTTCAAAGATCTTCTGTTGTTACGTTGAGAGTGAAATGACTTTGGAGGTTTGTAGAGACTGAATATAGATCAGATAACCAATGACCCACTGAGGTGGTTAAGGCCGGGAGACATCCCTGAATTGCAGACCTCCTTCACCACACAAATCAACACAGTTCATTCATTTTGTACCTAAGAAATACGATTGTATCTCTTCTGCACTACTGTAGATAACTTAATACGGAAACAAGGCATTAAAGTATAATGATGAAAGGATGCCATAACGTACAAGTTTAGAACCtgatctcatgaaaaaaaaatgaattcaaagAAGTCAGGACAATGTGGTAGAACTGAATTCTATTTCATACTAAACAAATCATACGATGAATTGAATTTTGTGAATTGTTATGAATTTTCAAGAGTAAGACCatattggttttttttattgttcatcATTAAGTCATCATATTCATCGGTGTACATCACAGATATgacattcattttcaatgtattcttttttattttaattcaagaCGAAAATGAAACTTTTGGAAGACATCAAGGGTGGAAAAATGTCCATTTTCATGTAAAATGCCCTGAAACTTCTTATGTCATCCTTTTGGAtgtaataaatctgtgtaaacATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38129 lncRNA upstream 52101 23456070 ~ 23459381 (+) True G32310
TU38127 lncRNA upstream 52772 23455960 ~ 23458710 (+) False G32310
XR_003403844.2 lncRNA upstream 324388 23177932 ~ 23187094 (+) True LOC113538428
XR_004579611.1 lncRNA upstream 484983 22988121 ~ 23026499 (+) True LOC117599173
TU37722 lncRNA upstream 700476 22809395 ~ 22811006 (+) True G31979
TU38297 lncRNA downstream 918 23531302 ~ 23560789 (+) False G32466
TU38290 lncRNA downstream 19965 23550349 ~ 23560789 (+) False G32466
TU38296 lncRNA downstream 23263 23553647 ~ 23560789 (+) False G32466
XR_003403819.2 lncRNA downstream 30338 23560722 ~ 23562633 (+) True LOC113538216
TU38343 lncRNA downstream 84479 23614863 ~ 23615065 (+) True G32502
XM_026933514.2 mRNA upstream 57819 23277943 ~ 23453663 (+) False lrp8
XM_026933515.2 mRNA upstream 57819 23277943 ~ 23453663 (+) False lrp8
XM_034299658.1 mRNA upstream 59512 23386793 ~ 23451970 (+) False lrp8
XM_026933516.2 mRNA upstream 59513 23277943 ~ 23451969 (+) False lrp8
XM_026933511.2 mRNA upstream 59514 23277943 ~ 23451968 (+) True lrp8
XM_026933126.2 mRNA downstream 2794 23533178 ~ 23551944 (+) True il12rb2
XM_026933151.2 mRNA downstream 103222 23633606 ~ 23653555 (+) True uhmk1
XM_026933019.2 mRNA downstream 305950 23836334 ~ 23839590 (+) True rgs4
XM_026933496.2 mRNA downstream 1028549 24558933 ~ 24567675 (+) True LOC113538433
XM_034311017.1 mRNA downstream 1038191 24568575 ~ 24570619 (+) True LOC113538193
trnaf-gaa_16 other upstream 35459 23475951 ~ 23476023 (+) True trnaf-gaa_16
XR_004579462.1 other upstream 909144 22598341 ~ 22602338 (+) False tmem69
TU36319 other upstream 2494035 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 3401257 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 3974468 19534441 ~ 19537014 (+) False smx5
TU38551 other downstream 489994 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 1122606 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 1122801 24653185 ~ 24653965 (+) False LOC117598985
XR_003403845.2 other downstream 3083266 26613650 ~ 26629851 (+) False st6gal2b
TU39837 other downstream 3100210 26630594 ~ 26648369 (+) False st6gal2b

Expression Profile