Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026933639.2 |
| length | 889 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | psmb3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 26222530 ~ 26229916 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02735 | PSMB3; 20S proteasome subunit beta 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577053.1 | lncRNA | upstream | 7097 | 26214465 ~ 26215433 (+) | True | LOC117595850 |
| TU39270 | lncRNA | upstream | 88833 | 26090747 ~ 26133697 (+) | True | G33340 |
| TU39271 | lncRNA | upstream | 127186 | 26090617 ~ 26095344 (+) | False | G33340 |
| TU39286 | lncRNA | upstream | 180230 | 26041835 ~ 26042300 (+) | True | G33352 |
| TU39254 | lncRNA | upstream | 250140 | 25957913 ~ 25972390 (+) | True | G33332 |
| TU39326 | lncRNA | downstream | 14026 | 26243942 ~ 26298782 (+) | True | G33383 |
| TU39346 | lncRNA | downstream | 69080 | 26298996 ~ 26304744 (+) | True | G33395 |
| TU39349 | lncRNA | downstream | 83099 | 26313015 ~ 26317787 (+) | True | G33397 |
| TU39342 | lncRNA | downstream | 107327 | 26337243 ~ 26408396 (+) | False | agap1 |
| TU39362 | lncRNA | downstream | 181340 | 26411256 ~ 26411456 (+) | True | G33410 |
| XM_026933291.2 | mRNA | upstream | 11350 | 26141682 ~ 26211180 (+) | True | LOC113538326 |
| XM_026933295.2 | mRNA | upstream | 11350 | 26141682 ~ 26211180 (+) | False | LOC113538326 |
| XM_026933293.2 | mRNA | upstream | 11350 | 26141682 ~ 26211180 (+) | False | LOC113538326 |
| XM_026933296.2 | mRNA | upstream | 11350 | 26141682 ~ 26211180 (+) | False | LOC113538326 |
| XM_026933292.2 | mRNA | upstream | 11350 | 26141682 ~ 26211180 (+) | False | LOC113538326 |
| XM_026933478.2 | mRNA | downstream | 2913 | 26232829 ~ 26240066 (+) | True | slc19a2 |
| XM_026933613.2 | mRNA | downstream | 32909 | 26262825 ~ 26264287 (+) | True | faimb |
| XM_026933394.2 | mRNA | downstream | 35581 | 26265497 ~ 26408268 (+) | False | agap1 |
| XM_026933395.2 | mRNA | downstream | 35581 | 26265497 ~ 26408268 (+) | False | agap1 |
| XM_026933393.2 | mRNA | downstream | 76427 | 26306343 ~ 26408268 (+) | False | agap1 |
| TU38758 | other | upstream | 1568565 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
| TU38760 | other | upstream | 1568565 | 24653185 ~ 24653965 (+) | False | LOC117598985 |
| TU38551 | other | upstream | 2201494 | 24020378 ~ 24021036 (+) | True | G32684 |
| trnaf-gaa_16 | other | upstream | 2746507 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| XR_004579462.1 | other | upstream | 3620192 | 22598341 ~ 22602338 (+) | False | tmem69 |
| XR_003403845.2 | other | downstream | 383734 | 26613650 ~ 26629851 (+) | False | st6gal2b |
| TU39837 | other | downstream | 400678 | 26630594 ~ 26648369 (+) | False | st6gal2b |
| XR_003403829.2 | other | downstream | 1539880 | 27769796 ~ 27787602 (+) | False | adam23a |
| trnar-ccg_4 | other | downstream | 1942726 | 28172642 ~ 28172714 (+) | True | trnar-ccg_4 |
| trnas-aga_1 | other | downstream | 2023554 | 28253470 ~ 28253551 (+) | True | trnas-aga_1 |
