RNA id: XM_026936003.2


Basic Information

Item Value
RNA id XM_026936003.2
length 1584
RNA type mRNA
GC content 0.48
exon number 4
gene id sirt4
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16166729 ~ 16171224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATTGTAACGATCCGACCTACAGAAGCAGTACATAAGCACTGTACACTGTTGTGTAAGGAACACATAGCGATGGAAGTTCTGTAGCTTCATGGGTTTGTGGAAAAATTACTCAGCGTCGATGCTGCTGCCATGGCGATCCCTGCCTCAGTGTGTGGCAGTGGGAAGACGTGCTGCCTCTTCAGTTCCTGTCGGCGCACTAGACTTTGTTCCATCCAGCAGCTCGGCAGACAGGAGCTCGTTGGAGCAGCTCCAGACGTTCGTATCACAAGCCTCACGTCTCTTTGTGTTAACTGGAGCAGGTATATCGACTGAGTCAGGAATCCCTGACTATCGTTCAGAACGTGTGGGGCTGTATGCACGCACAAATCGCAGGCCAATGCAGCACACAGAGTTCATGTGCAGTTCCAGGGCTCGGCAGCGCTACTGGGCCCGCAATTATGTGGGCTGGCCGCTGTTCTCTTCCCACCTGCCAAATTCAGCTCACTATACCCTGAGGGACTGGGAGGAGAAAGGCAAAGTTCACTGGCTTGTCACTCAAAACGTGGATGCTTTACATTCAAAGGCAGGACACCAGAGACTGACTGAGCTTCATGGCTGTTCACACAGggtggtGTGTATGGGCTGTGGGCAGCTGACTGCACGGAATGAGATGCAGAAGCGTTTTGCTGCACTGAACCCTGGCTGGGAGGCAAGCGCAGGCGAGGTGGCACCGGACGGAGACGTGATGTTGGCGGATGAACAGGTGCTGCAGTTCAGGGTTCCCTCCTGCCAGTCCTGCGGTGGCATCCTTAAGCCTGCTGTGACGTTTTTTGGTGACACGGTGGACCGAGCAACTGTGCAGTTTGTGCATGAGAGGCTGGCTGAGGCTGATGCTGTGCTTGTGGCTGGATCCTCACTGCAGGTGTATTCTGGGTACCGTTTCCTGTTAGCAGCCAGCGAGAGACGACTCCCAGTGGCCATTGTGAACATTGGTCCTACGAGAGCTGACCACCTTGCTGAGCTTAAAGTGAGCGCTCGATGTGGAGAAGTGCTGCCAATCCTCAGTGTCAGCTAAGACCAAGAACAGCCAATGCATGGAACATTTTCCCCACTTTCAGTGGTACTGAAACTCAGAAACCTTGGCATGACGACTTATAAAAATTGTTGGACTCTACCTCACTGTGCAATGATGGGAAGAATACAAACTGACTTAATTATCTATTATTGCTAGCAATAGCCATGTTTTAAATGATCTAGCttgtttcatttactttaacCCACATGATTGAAAAGAACGAATGTTAGAAGGGAAAATGAAGAGGGTAGAGGGTTTTTAATGCAGAGAGACCTTATAAGACTTGATAACTGTCACTCCTTTTTTTAACTGTTCTATTAACTGCAACTCAGGGTAACTCGAGTGAAAGTCAGAAATGTGTATTGTTATTAGGCTTTTTAACTGTAGTGatggaatgtttttaattagtttactgCCTACTAAATAGGACTAACTGATGGGTCACTGGACATTAGCCTTAATTCATGTTAAAGTACATgcaaactgttttaaaaataaaataacatttgcGGTGGATTCATATGATAA

Function

GO:

id name namespace
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11414 SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33361 lncRNA upstream 11485 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 43589 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 44397 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 60457 16106043 ~ 16106272 (+) True G28156
TU33170 lncRNA upstream 81761 16083289 ~ 16084968 (+) False slc2a11a
TU33449 lncRNA downstream 97485 16268709 ~ 16269552 (+) True G28361
TU33490 lncRNA downstream 162227 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 164968 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 174421 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 186858 16358082 ~ 16361347 (+) True G28410
XM_026925394.2 mRNA upstream 698 16157525 ~ 16166031 (+) True zgc:172271
XM_026918283.2 mRNA upstream 10649 16139484 ~ 16156080 (+) True sfi1
XM_026931590.2 mRNA downstream 3975 16175199 ~ 16180134 (+) True rft1
XM_026925678.2 mRNA downstream 9947 16181171 ~ 16182309 (+) True mustn1a
XM_026930160.2 mRNA downstream 17111 16188335 ~ 16195260 (+) True eefsec
XM_026916248.2 mRNA downstream 55781 16227005 ~ 16230782 (+) True LOC113527941
XM_026916171.2 mRNA downstream 55781 16227005 ~ 16230780 (+) False LOC113527941
XR_004580083.1 other upstream 872375 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 975073 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2665433 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2667364 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 10094 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2603546 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2646178 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3363217 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3938906 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile