RNA id: XM_026938250.2


Basic Information

Item Value
RNA id XM_026938250.2
length 1897
RNA type mRNA
GC content 0.46
exon number 13
gene id si:ch73-15b2.5
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16400949 ~ 16406482 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAGTGTGATGTCAATCAATGAGCCACACCTGAGGAGTCAAATCTGCAGCAGACGAGTGAGGACTTGCTGTCAGTGAGCAGggaagagaggtcagaggtccaTCTTCACGGCTTTAAATTGGTGTGAGACCAAATGGCCTACAGCCATGCTCCAGTTTGTGACTCTCCACGGTCTGAGATGGAGCAACACCGTTTCATAACGACTCAAGAGGATTCCCAAGCACCAGAAACAGTTTTTGGCGCCTCAGGTGGGATTGCTGAAGCTCTGAGATCAGTTGCGAGAGCAGACACGTGGAGTCTTCAGCGGGTTTTTCTCCAGACTGCATCACTCCTCAATGCAGAGGATCAAAACCCCAGTCTCACTCTCGCGCCAGATTCCCCTGTTCTGCTCAGTGCACGAGATGAGGACAAACGctccATGACCGATACTCAGGACAAAATTCAAGAGGAAACATTTGAAGTGAACATAAAATACATCACTGGTTCAGTGCCTCTGTATCAGGAGTACTGGCTGAAATGTATGAAGGCCGAGTTACAGAAGGCGCAGCATAAAAAACTGGCAGGCATTGTGGAAGCACGGTGTCGATCTGCCGGGCCCTCTCCTGCTGCACCAAGCCCAACTTGTGTATCAAGCCCGCCAGGACTGCATGTGGCACCATACGCCCTGTGGCAGCAGCTGCCCGAAGTAAAGAGGCAAAACTTGCTGCACACACTTACAGCCAGAGACATTCGCCATCAGGAGGCCATGTTTGAACTGATTGTGTCAGAGGCTTCATATCAGAAGAGTTTGCGAGTGGCAGTTGGACTGTTTCAGTCCTCGGCTCAGCTGAAGCAAACTTTAACTCCCGTGCAGAATCATGTCTTATTTTCCAACTTAAAGGAAGTCTGCAGGGTCAGTGAGGGATTTCTTCAGGATCTGGAGACTCGACTGGGGCAGAATGTGGTGATGTGTAAGGTTGGAGACATTGTACTGAATCACAAATCAAAGTTTCGTCGAGTCTACGTGCCCTATGTCACCAACATGATGTATCAGGAGACCCTTATTGCAAACCTTTTAGAAGAAAACCGGAAATTTGTGCTGGCCTTAAAGAAGCTTGAGAAGGACCCACTTTGCCAGAGACAGACACTCAAGTCCTTCCTGATCCTTCCCTTCCAAAGGATAACAAGATTAAGGCTTATTTTAGAGAATATCCTTAAAAGGACCGACGAACACTCCACTGACATTCCCAACCTAAAGAGTGCAATTGAAGCTGTACGAGAGGTAGTAGTGGAGTGTGACTGCAACGTCCAGCAAATGAAACGGACAGAGGAACTGGTTAGCTTGGAAAAGCTTGTGGATTTTGCCAGTGTCAAGTCAGTACCTTTGATCGTAAGTGGCCGTTATCTGATTCGAGCGGGACCCTTGAAAAAGTTGATGGTCAAGAGTAATCAGACCTCAGGCTCCCTGGTCTCTCGCACAGACATCTACCTGCATCTCTTCAATGACCTCTTGCTCCTCTCAGTCAAGAATGGCAACAGATTCAGCGTTCAAGATCATGCAGTGTTTCCTGCCAATGTTCGTGTAGAGGAGTTAAAGACTAAGATGTTGGGACTGCCACCTGATGCCTTCCTGCTCCATCTCACCCAAAACCACTTACGAGCTGCTACTGCTGTTATACTCACTGCACAGACACGGATGGAAAAAGAGACCTGGCTCCAACTTTTATCTTCACAGAATTGCACCATGGCTAATACAGAGACCAAGAAtgtttaaacacttttattaaGTATTATATGTAACTTTTTTGAATCCACTTGTATGACTAAACCTGCTAGAACGTCAGATCATATAGATTGTGAACTTTAAGTTATACAtgaaacattatttatagtaaataaagTTTGTAATAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33626 lncRNA downstream 41428 16358139 ~ 16359521 (-) True G28508
TU33633 lncRNA downstream 71528 16329108 ~ 16329421 (-) True G28515
TU33473 lncRNA downstream 134194 16266556 ~ 16266755 (-) True G28385
TU33472 lncRNA downstream 135789 16264924 ~ 16265160 (-) True G28384
TU33471 lncRNA downstream 136707 16263614 ~ 16264242 (-) True G28383
TU33656 lncRNA upstream 55620 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 55620 16462102 ~ 16489915 (-) False G28537
TU33936 lncRNA upstream 164308 16570790 ~ 16571524 (-) True G28779
TU34351 lncRNA upstream 647606 17054088 ~ 17054656 (-) True G29119
TU34418 lncRNA upstream 986976 17393458 ~ 17394467 (-) True G29167
XM_026938369.2 mRNA downstream 2548 16394241 ~ 16398401 (-) True LOC113541386
XM_026912883.2 mRNA downstream 14729 16372782 ~ 16386220 (-) True frs3
XM_034310265.1 mRNA downstream 20967 16372782 ~ 16379982 (-) False frs3
XM_026921515.2 mRNA downstream 46808 16346585 ~ 16354141 (-) True eno1b
XM_026938056.2 mRNA upstream 94 16406576 ~ 16416819 (-) True ddi2
XM_026938137.2 mRNA upstream 3046 16409528 ~ 16416819 (-) False ddi2
XM_026927117.2 mRNA upstream 12778 16419260 ~ 16430096 (-) True prkcda
XM_034298008.1 mRNA upstream 30358 16436840 ~ 16454566 (-) True LOC113531657
XM_034310370.1 mRNA upstream 69943 16476425 ~ 16488929 (-) True rad54l
TU32920 other downstream 931720 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 939948 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1101930 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1524959 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 866473 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1107230 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1542675 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1664505 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2170742 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile