RNA id: XM_026938931.2


Basic Information

Item Value
RNA id XM_026938931.2
length 2084
RNA type mRNA
GC content 0.46
exon number 13
gene id scly
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19052122 ~ 19060672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATTACTCAAGCGAAATCTCTAGTATTTATGGCTGGCTATATGATAATTAATAGGTTGTAAAATTAGCAGCACGCGGTGGATGGCTGTGTGTGAGGCTGGGCTGGGCTTACACGTGTCTGTCGGATGTTGTAAAAATGacAATGTGTGAGAAGGCTGGCTCCTCAGATCCTCTGGCGCAGAGTCCACAGGACAAGGCAGCGGTGGACCTGGACCATCACCGTAAGCGTGTGGAGCATGTGGTTAGTCCTGCTTTGAGCAGAATCTATATGGACTACAATGCCACTACTCCAGTTGATCCTGAGGTGGTCCGTGTGGTCACTGAGGCTTTAACTGAAGCTTGGGGGAACCCCAGCAGCATGTACCTGCCAGGCCTGAAAGCCAAAGACATCATTAATCAGTCGCGAGAGAGCGTAGCCAGGATGGTTGGTGGAAAGGCAACGGACATCATATTTACATCAGGTGGCACTGAGGCTAATAACATGGTGTTCCACTCAGCGATGGAACACTACTGGAAGAACAGCATGCCAGCTGAGGGCGGACGTGAGGAAAATTATCATCTTAATGGCAAAAGGATCCTTCctcacatcatcacatccaATGTGGAGCATGATTCTGTCAAACTCGTGGCTGAACACCTGGTAAAAATGGGCAAGGCAGATGTCACGTTCCTGCCTGTTTCTAGAGTGACGGGCcgggtggaggtggaggacgTGATGGCAGCGCTACGTCCCTCCACATGCCTGGTGTCAGTAATGCTGGCCAACAATGAGACAGGCGTTATTATGCCAATTAGGGAGATTTGTCAGAGGGTGAAGGCAGCAAAAAGATCACCGTCTTCTCCCAGAATTCTGCTGCACACGGATGCGGCGCAGGCCATCGGGAAGATCCGTGTGGATGCCCAAGAGCTGGGGGTGGATTACATTACAATAGTTGGACACAAGTTTTACGCTTCTCGAATCGGCGCCTTGTTTGCGAATGGTCCTGGAACGATGACTCCTCTTTACCCTTTGCTCTTTGGCGGAGGACAGGAGCGCAACTTTAGACCAGGGACTGAGAACACAGCAATGATTGCTGGTCTGGGGAAGGCTGCAGAGTTGGTGACAGCAAACCTGGTGAAAGACGAGTCTCATCTGCTGGATATCAGACTTTACCTGGAGCAGAGGCTGCTGACTGTGTTTGGAAAAGAGAAGCTTCGTTTTAACAGTCATTTCCATGGAACAGACACACTACCCAACACGTGCAACGTGTCTATTTTGGGACAAGGACTTCATGGCCGAAGAGTGCTGTCCACATGTAGGAGATTACTGGCCAGCGTGGGCGCTGCCTGTCACTCAGACCACGGAGATCAGCCTTCCTATATTCTGCTGAACTGTGGGATCCCATACCATGTAGCAATAAATGCTCTGAGGATTAGTGTGGGTCGAGGGACATCACGGGAGGATGTGGACATCGTGGTAGAGGACCTCCGGGACACAGTGGAGCGATTGGAGCAAATGAATTAGAGTCTTTTTCCTAGAGCACCGCTTGTGGTGGGGATGTTGAACAACAGAAACTCATGCTTTGGTATCATTAGCTGAAGGTAATGATCAAGGCAGGGAAAGCGGTAAGAGGTGACAGATTATGACTTAAAATAACACAGTTCTATTGTGGCTtagagtttattttaaatgggTTAATTTTTATGGTATCGAGATTCCTCTTCCTTTGGTACACTGTAACGATACAATGACTGGTTGTGTACAATGACAGGTTATGTACAGTGACAGGTTATGTACAGCTAAATGCACTAATTATCTAAAGTACTGTTACAGGCCTGAATGtttaaagtgaattatttattaatttggttaatatatattcttaatatatatacaatggCTTTTATGGAAGCATAGGTTGAGCATGCATGTTGTATTAAAGTAGAAATATCTGTAGTGCATTGCactgaatgtgcacaaatgaagcTGGAATATTATTAGCATGTATCAAGTAGGTGGTACTcttgtttggctttttttttttgtttttttaaacctgatgtTGAATTGTGTTCTGTCATCATTAAAGATCACAAGCTTCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34993 lncRNA upstream 2235 19050824 ~ 19051043 (+) True G29641
TU34992 lncRNA upstream 2840 19050226 ~ 19050438 (+) True G29640
TU34910 lncRNA upstream 104764 18933601 ~ 18948514 (+) False boka
TU34870 lncRNA upstream 217557 18818725 ~ 18835721 (+) True G29569
TU34849 lncRNA upstream 362271 18688653 ~ 18691007 (+) True G29561
TU35001 lncRNA downstream 25252 19085924 ~ 19086161 (+) False LOC113533886
TU35002 lncRNA downstream 25786 19086458 ~ 19086693 (+) False LOC113533886
TU35019 lncRNA downstream 131877 19192549 ~ 19195409 (+) True G29656
TU35041 lncRNA downstream 139643 19200315 ~ 19202099 (+) True G29674
TU35172 lncRNA downstream 198376 19259048 ~ 19259266 (+) True G29792
XM_026914107.2 mRNA upstream 3528 18988005 ~ 19049750 (+) False kif1aa
XM_026926326.2 mRNA downstream 425 19061097 ~ 19087211 (+) True LOC113533886
XM_026912916.2 mRNA downstream 29212 19089884 ~ 19096027 (+) True klhl30
XM_026922789.2 mRNA downstream 37065 19097737 ~ 19152457 (+) True crocc2
XM_026925815.2 mRNA downstream 93405 19154077 ~ 19196248 (+) True sned1
XM_026925822.2 mRNA downstream 93405 19154077 ~ 19190437 (+) False sned1
TU34871 other upstream 226358 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 235803 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 2870975 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3758924 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3861622 15191584 ~ 15191656 (+) True trnaf-gaa_15
TU35395 other downstream 473769 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1049458 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1954186 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 3537669 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 4415279 23475951 ~ 23476023 (+) True trnaf-gaa_16

Expression Profile