RNA id: XM_026941676.2


Basic Information

Item Value
RNA id XM_026941676.2
length 2459
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC113543455
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13441193 ~ 13448129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTATTTCACCAAAAAGCCAGGAGGTTTGCTTTCTCAAAACATAGGACGCTAACCTGAACTATAAAGTGGGCCAAATGTATGGATagaaaaaggaagaggaagaacaCTGAACATAGAGAAACAGAAAACCAGTTGTTCCTCTGTGTGGTGTGGGTCCACTGTCAAAAATGCCAGCTGTCAAAGGTCCTGAGTGTTACACTCCTCCAGAGGGGGGCTGGggttgggcagtggtggctggtGCCTTCATCTCTATTGGTTTCTCCTTCGCCTTCCCAAAGTGTATCACTGTGTTCTACAGAGATATCGAAGTGATCTTCAGTGCCAGCACAAGCCAAGTCTCATGGATCTCATCCATCAATGCATCCTTCATATATGCAGGAGGTCCAATTAGCAGTATCCTAGTGAATAAGTATGGCAGTCGTCCGATAATGATACTAGGGGGTTGCCTCTCGGGAACTGGACTCATTGCTGCATCTTTCTGCAACACAGTGGAAGCATTGTATCTCTTCGTAGGTGTGATAGGAGGTTTGGGACTCGCGTTCAATCTCAATCCAGCCCTTATAATGATTAGCAAATATTTCTACAAAAGAAGGCCGTTTGCTAATGGAATTGCCATGGCTGGTACCCCAGTACTTCTCTCCACTTTAGCTCCTCTGAACAGTTGGTTTTATGACCAGTTTGGTTGGAGGGGTAGCTTCCTAATCCTGGGTGGACTTCTGCTCAATTGTTGCGTAGCTGGGTCTCTCATGAGGCCTATAGGGCCAAAACCCAAACCTGCTGTGAAAGAAGTTAGTGCTGATGGAGAGAAGAAGACAGTGATGCAGCATATCAACAGTCTCATTGATCTGTCTCTCTTCAAACACCGTGGATTCATCCTGTACCTCATAGGCAATTTTGTGCTATTCTGTGGTATTTTCACTCCCCTGGTATTCCTCAGTAATTATGCCAAGACCAGGAATATTTCAAATGAGAAGGCTGCATCACTGCTTTCAGTACTGGCCTTTGTGGACATGGTGGTGCGGCCATCCATGGGAACAGTGGCCAACACCAAATGGGTACGACCCAGGatacagtatttctttgcagcttcagttctgtttaatggtgtgtgccACTTGCTTGCCCCTTTTGCACTGGATTATTTAGGGTTTGTGATCTATTCAGCTTTCTTTGGGTTTGGGTTTGGATGGCTGAGTTCTGTGCTGTTTGAGACCTTGATGGATTTGGTGGGAGCCCAGCGCTTCTCCAGTGCTGTGGGCCTGGTCACCATCATGGAGAGTGTGCCAGTGTTACTTGCCCCACCCTTGCTAGGAAAATTTAATGACATCTACCATGACTACAAATACACTTACATAAGCTGTGGAATACTCCTGTTGGTCGCAAGCATGTTCCTCTTCATTGGCATGGGCATTAACTACAGGCTGCTGGATAAGGAAGCAAAGGAAGAAGCTagaaaatcacacatgaaaGGAAATGAAGAAGAATCCACCATAGACGATGCAAACAAGGCTACTAGCAATGAGACAGCTGTAGCACTGCGAGCATCTAATGATACTAAATCTGCAGGGGAGTCTGTATGCATAAAGTAAGTGATCTAGTCCATGAATGACTAGCATGGAAAACTGAATGCAattgaaaaaagaataaactgaaagaaaacattGTAATCAATGCACTTTTGCTGCTTATATAACCAGGTTAGAGTTTGAAGAagtgtattaattaatttcatatgATTTTTCTCACAAGTTGAAGTATGCACAATTTTCATTTCACAGTAATGTAGGTAAATATAAGGGAGTCTTAAATAAACTGATTGACCTGTtagtaaaattataaatgtgtcAAGACAAATCAATAAGATTATCacattgaaaagaaaaaggagaaaaaaaatgaaaaccagCAGGAAAAGCAGGAGCTAGTTTTCCAGCCCTTCACATGAACTTGCACTGCCTCCATTCCGCTGGCAGCTCTTTTCTCTAATAACTGCTGTTTCTAACAGGAAGAAATCTAAGAGTTGTAAGGCAAtaccacagattttttttccattaaactgTGAAAATGACCTGTTAATGTCTCACTAAAACATTCTtaatttttacttaatttcCAACCATTTGATTTAGGTGATAATTTAGATATTTAAGGAGATTTTTGCATGCAGTCAGGATGTCTAAGGGGTAAAATGATTGAAACGATTCAAATGTGACAACTGACCCCTTAATTACCCactgaaaatattaattttcagcCATTAGATTAAGGTATATAATTAAGCTTTGTGTATGGATTCAGGATTTTTAAGGGGTAAAACTGAAAATTTCCCTTAAACgtacatatatattttcagaAGAAACAAGTGATTTAATTCtcaatttttaacaaaaattctAAACTATAACGAAAATACATagatattatttaacaaaaattgaatcaacaaatgattcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403407.2 lncRNA upstream 66697 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 67383 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 67383 13351846 ~ 13373810 (+) False LOC113533310
TU31025 lncRNA upstream 533099 12855396 ~ 12908094 (+) True G26266
TU30985 lncRNA upstream 641339 12799618 ~ 12799854 (+) True G26233
TU31582 lncRNA downstream 42032 13490161 ~ 13497729 (+) False tshba
TU31688 lncRNA downstream 178352 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 374255 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 386110 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 425186 13873315 ~ 13873523 (+) True G26884
XM_026924017.2 mRNA upstream 109016 13265788 ~ 13332177 (+) True si:dkey-238f9.1
XM_026924026.2 mRNA upstream 109016 13296992 ~ 13332177 (+) False si:dkey-238f9.1
XM_026922691.2 mRNA upstream 226630 13200052 ~ 13214563 (+) True mov10a
XM_026922698.2 mRNA upstream 226630 13200052 ~ 13214563 (+) False mov10a
XM_026916713.2 mRNA upstream 285049 13147270 ~ 13156144 (+) True wnt2ba
XM_026929119.2 mRNA downstream 8433 13456562 ~ 13466321 (+) True LOC113535652
XM_034300793.1 mRNA downstream 19313 13467442 ~ 13490077 (+) True sycp1
XM_026921646.2 mRNA downstream 47726 13495855 ~ 13506004 (+) False tshba
XM_026921620.2 mRNA downstream 48044 13496173 ~ 13506004 (+) False tshba
XM_026921662.2 mRNA downstream 50804 13498933 ~ 13506004 (+) False tshba
TU31442 other upstream 109325 13266027 ~ 13331868 (+) False si:dkey-238f9.1
TU30617 other upstream 913702 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 1233936 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 2532621 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2686571 10754515 ~ 10754622 (+) True LOC113537259
XR_004577014.1 other downstream 47727 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 47728 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 47728 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 47953 13496082 ~ 13499365 (+) False tshba
XR_004577013.1 other downstream 48025 13496154 ~ 13499365 (+) False tshba

Expression Profile