RNA id: XM_026945421.2


Basic Information

Item Value
RNA id XM_026945421.2
length 2113
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113545806
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4708587 ~ 4717273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGCGTACTCTTGATGTGCATAGTACGCTAGTGTGCTTAGCTGTGCCCTAAATGAAGAGGTCACGTGGTTCGGTGAGCGTGCACGCGAAACGAGAGGAAgttaatattgtttttgttaatactGTGCGAGGCGCCAAAATATTTCAGGCGCAGTAGAAAAGCCGAGCTTGAGCTCACTGAAAGTTAACAGGTCCTGTTTGCCAGGGCAACATGAGCTGGACTTTCTTGACACGGTTGCTAGACGAGATCTCTAACCACTCGACATTCGTGGGGAAGATATGGCTCACACTTTTCATCGTGTTTCGGATTGTTCTTACTGTAGTGGGTGGTGAGACCATTTACCATGATGAGCAGAGCAAATTTGTATGCAACAGTTTGCAGCCTGGATGTGAGAATGTATGCTATGATGCCTTCGCGCCACTCTCCCATGTGCGCTTTTGGGTTTTCCAGATCATCACCATCAGCACACCATCCATCATGTACCTAGGCTTTGCTGTACACAAGATTGCACGCATGACGGATGATGATTATCAGCCACAGGGCTGTAAGCGGGCAAAACAAGGTGCCAGTCACAGCTACAAAGAAACGGGTGAAGTGGGTGAGGAGGTGCCCATGATTACAGAGGAGATAGAGCTGtctgagaaggagaagaaggaattGACTGAATTCCAAAGCAGGTCCATGAAGCATGATGGTCGTCGTCGCATTCGTCGAGACGGACTGATGAATGTCTATGCACTGCACCTAATCTTACGCAGTGCCTTTGAGGCAGCCTTTCTCTTTGGCCAGTACATGCTCTATGGCTTTGAAGTGGCACCATCATACGTGTGCCAGCGCAGCCCATGTCCACACACGGTCGATTGTTTTGTGTCACGCCCCACTGAGAAGACTGTCTTCCTGCTTGTCATGTATGTGGTAAGTGCGTTCTGCCTGGCACTCACCGTCCTCGAGATGCTACATCTTGGTATTGGAGAACTCAGAGACTCTATGTGTAAGCGGTCACAGCGGAGATGCCCACTCCAGACACAGGCACGCCGCATCCCACCAAGCTACCATGCTGCTCTGAGGAGGGATATAGCAGGCAGAACAAAAAGCAATTTGCAAGAAAACATTGCTGCTGAGGTTCTAGGTGATGAGGTGGAGTGTCTGCGGAGACACCTGAAGATGGCACAACGACACCTAGCACAGGCCTACCAGAATGAAGAGGGCATGGAATCAGTGGCACACAGCAGCAGCCCAGAGTACAACAACATGGCGGCTGAGCAGAACCTACTTAATATGGCTCAGGAGAAACATGCCAGCACTGCTAAGAAAGGGGTCCACCCATGAACCTCTCATCAGTCAAACCTTCTGAAGGAAGGAATGCACATATCAGAGGGTGGTTATTGGGACAAGAtattagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagcaTTGTGGTTTTGTGGTACAGCATATCCTCCCAGGTGTGCTGTTGGGTGAGATGCCTTGTGTTTGCACTACAGTAACTGCACAGTATTTTTCTAATCCCACTGCCTTTATGTGTGTTAAGTGATCTAGGACTTGAAGCATTTGAATAATGTTACTGCTGTAATTGTTGAATTGGGCTGTTCTGGCAAATGCTTGAATACTTGCACTTCATGCTATGTttcatttgttacattttaatcaATTTGTAGTacaaattgtaataatttatatgCAATAATATTTAGGCCtatattttgttgatttgaaGGAGTGTTTCATTATTCAATTAGTAGGAGAAaataagaatttatttatttgcaataaTATCCTGCAAAGAGCATACATTTCACCATCTGTGctctgtttaattattattgtcttCAGTTGTAATCATTTTTAGTAATAGTAAATCATGGTAAAATCTGGATCTAAAACCTTTTGCACCTgataaattgttattttgatATGTGCCTCATTCATTCAATACTAGACCTGTCTTTAActggaagttttttttccccttagttGTAATATGGTACAATGTCAAACAATTTCAGTACCATTTAGATAGCATCCAATACATTGCTACATTTTGTAGCCTTTGTTCATActtaataaaatgtgtacatttgCA

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25799 lncRNA upstream 45463 4658214 ~ 4663379 (+) True G21629
TU25744 lncRNA upstream 182510 4525923 ~ 4526332 (+) True G21577
TU25675 lncRNA upstream 250996 4457272 ~ 4457846 (+) True G21514
XR_004579534.1 lncRNA upstream 274106 4429407 ~ 4434736 (+) True LOC113545955
TU25948 lncRNA downstream 90850 4808123 ~ 4808427 (+) True G21763
TU25957 lncRNA downstream 113630 4830903 ~ 4834058 (+) True G21771
TU25983 lncRNA downstream 161936 4879209 ~ 4902000 (+) True G21791
XR_003404676.1 lncRNA downstream 194530 4911803 ~ 4913793 (+) True LOC113545969
XR_004577063.1 lncRNA downstream 199872 4917145 ~ 4918634 (+) True LOC117595874
XM_026945569.2 mRNA upstream 16814 4651006 ~ 4692028 (+) False stk11ip
XM_026945567.2 mRNA upstream 16814 4652999 ~ 4692028 (+) True stk11ip
XM_026945566.2 mRNA upstream 16814 4652999 ~ 4692028 (+) False stk11ip
XM_026945450.2 mRNA upstream 121646 4566734 ~ 4587196 (+) True igfbp5a
XM_034312090.1 mRNA upstream 265201 4442811 ~ 4443641 (+) True LOC117599286
XM_026945633.2 mRNA downstream 36993 4754266 ~ 4759645 (+) False spega
XM_026920348.2 mRNA downstream 405447 5122720 ~ 5127596 (+) False wbp4
XM_026920338.2 mRNA downstream 405448 5122721 ~ 5127596 (+) True wbp4
XM_026920371.2 mRNA downstream 423128 5140401 ~ 5154427 (+) True LOC113530419
XM_034313879.1 mRNA downstream 522572 5239845 ~ 5255979 (+) True nhej1
XR_003404681.1 other upstream 48719 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 357094 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 967152 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other upstream 967152 3738253 ~ 3741690 (+) True LOC113545962
XR_004580290.1 other upstream 1130534 3564210 ~ 3578308 (+) False LOC117599944
XR_004579614.1 other downstream 36993 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 370861 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 491073 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 1000257 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4733652 9450925 ~ 9454462 (+) False hmga1b

Expression Profile