RNA id: XM_026945422.2


Basic Information

Item Value
RNA id XM_026945422.2
length 1473
RNA type mRNA
GC content 0.49
exon number 2
gene id inha
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4717410 ~ 4719627 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTCACTGGCTTCTTCTCTACTGGATACACACTGATAGCATGAACCCAAACAGTTGTATCAAAGACATGATTCATTTGTATTAGGATAGTTAGGAAGGAAAAGACCAGACAGCAAAATAAGGGAACAGACCAAGGACAAGCAGATCATAGTCACATGGGAGAAACTGACAGACTCTTCAGTGCGCTCACTCAGAGATTCTGAAAAAATCTGGATTTAGAATTTTGGATGATGAATCCCCCTATGATTATTTGCGCCCTTGTCTTTTCAACAGCATGGGTTGGCCTTCACTGCCAGGCCTGCCAGGCAGATCTGCCCCAGGAAGTAGTGCTGGACTGGTTAAAGAGACGCATTCTGGAGGGACTACGGCTTGACAAGCCCCCTGTGCTGACTCTACAGAGTCCATCTGGTCAGAGGGTGCACGTGGCAGCCCAGCATGGAGCTCGGCGAGTACGCAGGGAGGCTCGGCTGGAGAGGAGGCAGCATCAGGAGATTTCCCAAGTCATTCTGTTCCCCAGCTCTGATAGCACCTGCCTGGACACAGACTCAGTCTCTTCTGAGGACTCACCCAGTCACTTTACCTACTACTTCCAGCCATCTCTGGACAGTCAGGAGTCCATTATCACCTCAGTGGACTTCTGGTTCTATGCCGGTGAGGCCATTGCAGTGAATACCACCTCTGTGCCACTTTACATTCTCACAACGCACCAGGAGCTAATGCAGTTAGCTCAAAGGCCATCTAAATGTAGCCCAGATGGCTGGAGCACCTATAGGCTTGAGCGCCACTTCCACAGTGCCATAGCTAATGGGCCATTCTTGCTTCAGGTGCGATGCCTAGTATGCAGCTGCTACGCCTCAGAGGAGGACAAAACTCCTTTCCTGCATGTCCATGTTAGGCCACATGGGCCTGAGCGTGCCCGTAGAGCACCCAGCATCGCGTGGTCACCAGCTGTCATTGAGAAACTCCAGAGGCCTTCATCTGAAAAAGATGACACTTATTGCAGGAGGGAGCAGATTGAGATCTCTTTTGAGGAGCTGGGCTGGGACAACTGGATCGTCCACCCaaagactttcagcttttaCTACTGCCACGGGAACTGCTCAAGCCCTGATTTCACAGCCACACTACTGGGTTTGCGGCAGTGCTGTGCACCTGTGCCTGAGAGCATGAGGTCACTACGCTTCACCACCACCTCAGATGGAGGATTCTCATTCAAATATGAGACACTGCCCAATATCATACCTGAGGAGTGCAACTGCATTTGATGCATTTGTTCAGGTTCATGCAGTTGAACTTTTAAAAAGCTAGTAATACAGATGCACTTGTAAGATAAAGTTTGATGCATTTGGGCCTCCAGATACTACTCAAATCTGTTGTTTATAGACCTGCTTTCAGAAAGAGTTTTTGATAATCCTGTAACTTGgttgcaaaacactgatttaattCAGTAAACTACACCTGTGAGAAAAAGGA

Function

GO: NA

KEGG:

id description
K05500 INHA; inhibin, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25866 lncRNA downstream 17353 4699824 ~ 4700057 (-) True G21693
XR_003404663.2 lncRNA downstream 147738 4550571 ~ 4569672 (-) True LOC113545826
TU25760 lncRNA downstream 170701 4540227 ~ 4546709 (-) False G21592
TU25761 lncRNA downstream 170701 4540227 ~ 4546709 (-) True G21592
TU25724 lncRNA downstream 255394 4460931 ~ 4462016 (-) True G21557
XR_004579646.1 lncRNA upstream 44282 4763909 ~ 4765538 (-) True LOC113545947
XR_003404675.2 lncRNA upstream 55661 4775288 ~ 4777331 (-) True LOC113545964
TU25936 lncRNA upstream 65206 4784833 ~ 4785735 (-) True G21751
TU26005 lncRNA upstream 106923 4826550 ~ 4826923 (-) True G21810
TU26010 lncRNA upstream 177311 4896938 ~ 4897615 (-) True G21815
XM_026945449.2 mRNA downstream 98943 4590384 ~ 4618467 (-) True igfbp2a
XM_026945646.2 mRNA downstream 233496 4475852 ~ 4483914 (-) True LOC113545959
XM_026945430.2 mRNA downstream 352239 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA downstream 352282 4359120 ~ 4365128 (-) False prelid3b
XM_026945639.2 mRNA downstream 678126 4034071 ~ 4039284 (-) True cldn10a
XM_026945530.2 mRNA upstream 94103 4813730 ~ 4902011 (-) False obsl1a
XM_026945531.2 mRNA upstream 94103 4813730 ~ 4901992 (-) True obsl1a
XM_026945532.2 mRNA upstream 94103 4813730 ~ 4883412 (-) False obsl1a
XM_026945533.2 mRNA upstream 120200 4839827 ~ 4902011 (-) False obsl1a
XM_026920302.2 mRNA upstream 447234 5166861 ~ 5201211 (-) False LOC113530384
XR_004577458.1 other downstream 258963 4458336 ~ 4458447 (-) True LOC117596286
XR_004577457.1 other downstream 269931 4447367 ~ 4447479 (-) True LOC117596284
trnaf-gaa_14 other downstream 385239 4332099 ~ 4332171 (-) True trnaf-gaa_14
TU25557 other downstream 460323 4256668 ~ 4257087 (-) True G21434
XR_004579840.1 other downstream 939422 3750018 ~ 3777988 (-) True rab22a
XR_003404665.2 other upstream 93648 4813275 ~ 4902011 (-) False obsl1a
XR_003404666.2 other upstream 101710 4821337 ~ 4902011 (-) False obsl1a
XR_004579842.1 other upstream 101731 4821358 ~ 4902011 (-) False obsl1a
XR_003404667.2 other upstream 101752 4821379 ~ 4902011 (-) False obsl1a
XR_003403147.2 other upstream 391835 5111462 ~ 5201212 (-) False LOC113530384

Expression Profile