RNA id: XM_026945430.2


Basic Information

Item Value
RNA id XM_026945430.2
length 1163
RNA type mRNA
GC content 0.43
exon number 6
gene id prelid3b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4359120 ~ 4365171 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGGCGGTAATGGACCGGAAGCTGGTTTTGCAACCGCTATAAAGCCTCATAtgcagaagaagaagcagcactTGCCGGTCAAGTCTTCAGAGCCGATCACAAGACACGATGAAGATCTGGACGTCAGAACACGTTTTCAAcCACCCATGGGAGACAGTGACCAAAGCAGCTATGCAGAAGTACCCCAACCCCATGAACCCTAGTGTATTTGGAGTAGATGTGTTGGACCGAAGAGTGGACCAGCAAGGCCGGCTTCACAGCAAACGTCTACTCAGCACAGAATGGGGCCTTCCATCTATAGTCAATTCAaTCATTGGTAATGCACGTGCATGTACGTATGTTCAAGAGCATTCACTCGTGGACCCCAAAGAGAAGACTTTGGAGCTGAAGTCTACAAATATTACATTTACCAACATGGTGTCTGTAGATGAAAGGCTTGTCTACAAACCACATCCAGATGACCCATTAAAGACTGTGCTGACCCAGGAGGCCATCATCTCTGTGAAAGGAGTCAGTTTGAGCAGTTACCTAGAGGGACTTATGGCAAACACTATCTCAACTAATGCCGGAAAGGGCCGTGAAGCAATGGAGTGGGTTATCAGGCGTCTGAATGCAGAGATTGGGGAGCTAACCATTACAGCAAGAGGCACAATGCGGACACCCATGGCTGCAGCAGTCGTAGAAAAATGAACTTTTCGTGTCTCTGCGCTCTTTAACACCTTTCTTTGCGGACCACTTCAGTGTATCTTTTCTCGTTCTGTCCTACTTTCTATgctgttttttgcatttgtggaACAGAGTTCTCCCCATCTCCCTTGTACAATTGACTCTATATTAGAGGCTGGAGGGACACAAATCGGGAAGCGAATCTCTGCTTCATTTAATATTGAAAACAGCCTGTTTGCACTGAAGAACAAGCAAGATGTGGTTTTGAGTGTATTTAATAggtgattacacacatttacacttactCTGACgtttataactttataattGATCAGAgcaagcatatatatatatagtgtgtaacgagaaaacattttatttatttattttttatatatttccacCACAGAAATGCTAACTTGATGTGATAGCTGTTAGCTTTTATTCATTCTAATAAAGTTGGCATTTTTGTACACATGTACATTGAAGGTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25634 lncRNA downstream 4805 4354099 ~ 4354315 (-) True G21486
TU25564 lncRNA downstream 87091 4271809 ~ 4272029 (-) True G21441
TU25540 lncRNA downstream 103758 4245757 ~ 4255362 (-) True LOC113545816
XR_003404661.2 lncRNA downstream 103928 4249442 ~ 4255192 (-) False LOC113545816
XR_004579507.1 lncRNA downstream 103929 4249442 ~ 4255191 (-) False LOC113545816
TU25710 lncRNA upstream 62022 4427193 ~ 4429341 (-) True G21546
TU25719 lncRNA upstream 77685 4442856 ~ 4443450 (-) True G21552
TU25721 lncRNA upstream 80632 4445803 ~ 4446215 (-) True G21554
TU25722 lncRNA upstream 85291 4450462 ~ 4450778 (-) True G21555
TU25724 lncRNA upstream 95760 4460931 ~ 4462016 (-) True G21557
XM_026945639.2 mRNA downstream 319836 4034071 ~ 4039284 (-) True cldn10a
XM_026945452.2 mRNA downstream 333142 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 350543 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA downstream 350543 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_034314260.1 mRNA downstream 400302 3938000 ~ 3958818 (-) False stx16
XM_026945646.2 mRNA upstream 110681 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 225213 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 352239 4717410 ~ 4719627 (-) True inha
XM_026945530.2 mRNA upstream 448559 4813730 ~ 4902011 (-) False obsl1a
XM_026945531.2 mRNA upstream 448559 4813730 ~ 4901992 (-) True obsl1a
trnaf-gaa_14 other downstream 26949 4332099 ~ 4332171 (-) True trnaf-gaa_14
TU25557 other downstream 102033 4256668 ~ 4257087 (-) True G21434
XR_004579840.1 other downstream 581132 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 622234 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 1321764 3037284 ~ 3037356 (-) True trnaf-gaa_13
XR_004577457.1 other upstream 82196 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 93165 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 448104 4813275 ~ 4902011 (-) False obsl1a
XR_003404666.2 other upstream 456166 4821337 ~ 4902011 (-) False obsl1a
XR_004579842.1 other upstream 456187 4821358 ~ 4902011 (-) False obsl1a

Expression Profile