RNA id: XR_003404665.2



Basic Information


Item Value
RNA id XR_003404665.2
length 7917
RNA type misc_RNA
GC content 0.45
exon number 25
gene id obsl1a
representative False

Chromosome Information


Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4813275 ~ 4902011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CCAATACAGATGAGCCAAACACATCTCCACATATAAAGGAAGCTTGACAGTAACAGGAAAAGCTGGAGGGAATTGCACTACTTTGGAATTTATTAAAGtttgaaATTTAGTAAAGAAAGCCAGGAGTGcttaattttaataaagacaATTTCATATTGCAAGCCTTCACTAAATAACAGCAGCCATGGATGTGTTTGGTGGTGCCCCCCGTGTTCTTGGATACCCACGTTCAGTTCTGGTGAAAAGTGGGTCAGATGCAGTCCTTAAATGTCAGATCAGTGGAGATCCAAAACCTGATGTGTTGTGGGAGAGACTGAATGAACCCATTATCCCTGAGGGTCGCTACTGCATTACCCAGGATGGCAACGTGTGCACCCTCTCCATCTATCAGGTCACTCTGGAAGATGCTGGACAGTACATCTGCAGAGCTAAGAACAGCATTGGGGATACTTATGCAGCTGCTACTCTTAAAGTAGAAGAGGAAACCCAAAATGTTCAGATGATGTATCCCCTGCAAGAACAACAGCAAATTATGGTTATTCCaccaaaacaagaaataaaaaatctcaAGCAGCCTTTGTCGGACATGGAGGCAGATCTTTTTCAGGACAACAAACCCCGGTTCCTCATCAAACCTCTGTCCTTGAGAGTAGATCAAGGAGAAGATGCTGCCTTCTCATGCAAGCTTTGGGGTAATCCCTTATCTGAGGTTGTGTGGGAGAAAGATGGCAAGCAAGTCAATGAGATCTATGAGAGCTCACACTTTTGCATCAGCCAACAAAATGAAGGATGGTTCCAGCTGAAGATCTTCCAAACACGAGCCCCAGATGGAGGAGTCTACACCTGCAAAGCAGTCAATCAGTATGGTGAAGCTGTGACTGGAGCTGTATTGTTGGTTGAAAGTATGCCTGAGCAAGTCGGGAAGAACCGTCGAAATGGCTACACCAATGGCCACTCATCTCCAGACCAGAATGACATGCATTCAAAATGGAAATACTCATGTGAGAAGGACACATACTCAAGAGGAAAGCACCTGAATGTGGCTAAGGCCAAGAAGTTCATGATCACAGAAGGCAAACATGCCAAATTTCGTTGCTATGTAACAGGTAAACCCAAACCTGAGATCCTGTGGAAGAAAGATGGGGAATCAATTGTGCCTGGACGACGTCACCTAGTGTTTGAGGACAGGGAGGGGCACTATACGTTGAAAGTTCTTTACTGCAAGCAGCAAGACACTGGGCTGTACATCTGTACTGCATCAAACACACTGGGGAACACATTAAGTGCTGTACAACTCTCTGTAAAAGgGCCCCCAGTGCAGTTCAAACGGGCTCTGCATGACATGGAAGTGAGGGAAAAGGATGTTGCCATTCTGGAGTGTGAGGTTCCAGAAGAGTCTGTCCCCACCGTATGGTACCTAGAAGACCAGAGACTTCAGCCAGGGAGTAAATATAGCATGGAACAGAATGGAACAAGACGGCGTCTTACTATACAAGATGTAGGGGCAGACGATGATGGAGTCTATGTATGTGAGATGCCTGATGGTGGGAAAAGCATTGCAGAATTATCAGTAAAGGGTCCAATTGTAAAGAAGCTTCCTCACAGAATGCaagtgctggaaggtgaaaacGCAGCTTTCTGTGTTGAGGTCGATGGGGAGGACATGGAAGTGTACTGGTTTAAAGATGgcatgcagttacaggaaacACATCAGACCATTATCAAATCCTTTGGGAAAACACACATCCTGGTCTTTGTAAATACATCTTACCAAGACTCTGGCACAGTTACTTGCATGGCAGGCAGATCTAGCACAAGCTGCAAGCTACGCATAAAAGcaataAGACACTGTCCACCCAATTGTCCTGTTGGAGTCCAGATGAATGCAGACTGCCAAAATGGTGTTGTTTTGTCATGGTCACATTCCCCAAACCTGCAGAATTCCACCAAGTTCATGTACCAAGTAGAATTCCAGGAGATTGGCTCTCAGGAGTGGGAGCGCTGTTTCACCACAGAGACTGGCACCTTGGCTGAGATCCTGGGTGACAGTGTGCCATGTGAGGGTGACTATCGCTTCCGTGTCTGCTGTGTTAACAAATATGGCAGGAGTGATCATGTGGAGTTCCCTAAATCAGTGCATCTGGtCCCAGGTCCAAAGATAAAAACACCATTGAAGAACACTAGGGTGACTGAGGGGGAGGATGCTGTGTTCTCCATCGAGCTCTCCACTGCTCAGATTGGCACATGGTTTCTCAATAGCACTCAGCTGCAAAGAAGTGAAAATCTTTGCATCAGCCAGTCAAAGAACATCCACACTCTGCGGTTTTGCAATGTGTTGAGTGTGTATAATGGAGCTGAGATCACATTCATTGCCAGCGGAGTCCGTGACTCAGCAGTCCTTCAGGTGCAAGCTGCTGTGAATAAGTTCATCCCTCTGCCAAATGAGGATAGCAATAAGAGAGTACAGGCTGGAAACCCCATTGTGCTGTACTGTGAGATCTCAAACCCCATAGCTGCTATCTGCTGGTTCAAAGATGGGCAGGAGCTTCATCAAGAAGAAGGGCTGAACATACAAGCCGATGGCAACATGAGGAGGATTGTTATCCATTCATCAGAATATTTCCACTCTGGAGTGTACACCTGCCAAACTGATGATGATATTATCACCTTTAACGTGAATGTTGAAGGGCCCCCAGTATCATTTAAAGAAATTCCATTGGAGGAGAGGCACAAAAGCACCATGGAGCTGGACCCAGTGGTGCTGCACTGTGAGCTCTCTAGGCCAGATGCCACTGCCCACTGGTTTAAGGATGGTATAGAGGTCTTCCAGAATGACAATGTCACCATTAAAGCTGAAGGCACCATGCAGTGGTTTATCATCAGATCAGCAAATTTGTCTGATTCTGGCACATACACATGCCAAGCAGGAGAAAATACCATGTCATTTACAGTCACTGTTAAAGAACCACCAGTGATGATTGTGGAACCAAAAGATGACATCCACTTAGATCGCTATGTCTCAGAGGAAATTACATTGAGCTGTGAGCTCTCTCGTTCAAATGGAGCGGCATGCTGGTTTAAGGATGGACTGAAGGTCCAGGGTAGTGAAAATGTTCGGCTGAGTGCTGAAGGCCCATACAGGAGGTTAACCATCATCTGTGCCAGCAGAAGGGACTCGGGAGAATATTTATGTGACACAGGTGGTGATACTGTTTTCTTCCAGCTGAATGTCACAGAAGCTCCAGTGCACATTTTGTCCCCTAGCGAGTCAGAGGTGGAAGTATGCATATTGAGATCGGAAAGACTTGTCCTCAGTTGTGAGATCTCAAAGCCAGAGGCTAAAGTGTGTTGGTACTGTGATAGCATGGAGGTAGAGGAAAGCAATAATCTTATACTGGAGGAAGATGGCGTTCACCGCAGGCTGGTTATACTTCAGACCACTATAGATGATTCaggagagtatgtgtgtgaaacTGCAGATGATTCTGTGATCTTCTGGGTGAAAATAGAAGaaCCGCCTGTTAAACTCTCTTGCTCCAAAATGACAGGCAGTGATATTCAGGCTTTCTCTGGGGAAGCAATGATACTGGAGCTAGAGGTTTCACGTGAGAATGCAGAGGTGTGCTGGATGAAGAATGGTATGAAGGTGGAGGAAAGTAGCAATGTCACCATTACTGTGGATGGCCTTATTCGCAAATTATCCATCCACTCGCCATCGCTTCTCGACTCAGGCCTTTATACCTGCAATGCGATTGATGATACGATGGACTTTCAAGTTAACATTACTGAGGCTCCAcagaaaatcctgaaaaaagatgaaatgaaGACAGAATACAAGGTTTTGTTGTCTGATGACATTGTATTGGAATGTGAGCTATCCAGGCTAAACACAGTTGTAAGGTGGTACAAAGATGGAAGCCCTATTGAGGAAAATGGACATTTCTGTTTTGAGGAAGAGCAGGCTTTTAGAAGACTAGTCATCCTATGTGCTGAGCTGGAGGACTCTGGGGAATATTTACTTGATGCAAAAGATGAcagcatttcatttcatgtcacTGTAGAAGAGCCTCCTGTGAAGATTTTGGGGAACTCCGACCAGACTGACTACCAGGAAATGGTAGCAGGTGATGACCTGATTCTGGCATGTGAAGTGTCACGAGCAAATGCAACCATTCAGTGGCTCTATAATGGGAAACCTGTGGTCCCTGACTCCCGCACATACATTGAGAATTATGGCACACTGCACAAACTTATTATATCTGATATCCAGTCCACTGACTCTGggaaatatgtgtgtgatgccctTGATGACCAAATGGTGACCACAATTAAAGTCCAAGAGCCCCCTGTAGAGTTTATTAACAAAGAGGAGACAATAATGGTTACGGGTTATGAGGCAGAAAGCATCACTCTGACAGCCGTGGTGTCCAGGCCAAATGCTCCTGTGCGCTGGTTGAAGGACTGGACTCTGGTGAGTGGAGAACGTTTCAGCAGCACCTCTCAGGGCCTGAGCCACACCTTCACCATTGAGCCGCTGAAGAGATCTGACAGTGGCGAGTACACATGCGACGCCATCACAGATGAGCTGCACTTTAGCTTGCTGGTTAAAGAGATGCGCATTAAGTTTGTGAAGCCACTGTTTGATACTGTGGCACACAGGGATGGCATGATCACACTGCGATGTGAAGTGTGTAAGTCCAAAGCTGACGTGCAGTGGCTGAAGGATGGTGCAGAGATCACACCAAGCCGGCGTTTCTCCATCCGGGCTGATGGTGTGGAGCGGAGCCTCACCATCCACCGCGTTGCCAAAGAGGACGCTGGAGAGTATGCCTGCAAGTCCAGGGATGACCGGACCAGTGCTCGAGTCAGAGTGGAGATGCCTCGTGTGGTGGAATTCCTGACAGAGCTCCAAAACACCACAGCGATGGAGGGCGAGGAGGCAATGTTTAAGTGTGTGGTGTCTCCCAGTGATGTACAGATGATCTGGTTCATGGATGGAGAAATCATCAACCCCAGCAAGCGTTTCAAAATTGAACAGAATGGCCTGTGCCACACTCTGATCATTCACAATGTCCAGTTACTAGACTCCTGCAGGATCACAGCAGAGGCGGAAGGACTTGTGTCCAAAGCCATCCTCAAAGTTCAGGAGATTCAAGTACTGTTCACTAAAAAGATGGAGGTGGTGATGGCCGAGGAGTTTGGCGAGGCCATTCTTGAGGTAGAGGTGAATGTGGAGTCAGGGGAGGTCCAGTGGATAAGGCAGGGTGTAGTGATCCAGCCCAGCCCACGTCACACTCTTACTCAGAACAGGTGCAAGAGAAGCTTGAGGATCACGAATGTAAGTCAATCTGACCGTGGCACCTACCGCTGTGAGAGTCTCCATGATCACACACAGGTTAAACTCAATGTGGAGCCCAGAAAGATCACTACAAACAAGGGGTTGATGGATATTGAAACCTTCGAAAGAGAAACTGCCTCGTTTGAGGTGGAGCTGTCCCACACAGATGTGAAGGGTGTTTGGCAAAAGGACGGATTGAGGATTAAAAACAGCACCACGAAACGAGTCAGCTCCAGTGGACATGTACACAGCCTCACACTCACCAACCTCACATTGGAGGACACAGGAACCATTGTCTTCTCTGCAGAGGGACTCAGGACCTCAGCCCAGCTCTTGGTCAAAGAAACACCAGTATCACTCATAAAGAAGCTGTCAGATATCAGGCTGGAGGAGGGCTCCTTGATCACACTGGAGTGTGAGCTGTCCAGACAAAATGTGGATGTCAAATGGCTGAAGAATGGATTGGAGCTTAAGTCAGATAAAGGTTTGAGGATCTACATGATGAAACGGAAGCATTGTCTGCAGATTATGGAGAGTAGTGTCAATGACTCTGGCCTCTACACATGTAACATTGGTGACCTCTGCACATCCTGCAAACTTGAAATCTATGAGCGGCAGTTGGAAATTGTCACAGCGCTGGAAGACCTGTATGTTAATGAGGAGCAGAACgctgtgtttatgtgtgaggTGTCCATGGAGAATATGTCTGGAGACTGGTACAAGAATGGCCAAAGAATCCGGCCAAGCAGCACCATCAAGACTCGCCAAGAGGGAAAAAAGCACTTTCTCCTAATATGCAATGTTACATCAGAAGATGCTGGAGAGATCAAATTTGTTTCTAAACAAGTTGAATCAGTTGCCTACCTTGAGGTTCAAGAACTCCCAGTGAGCATTGTGCGCCCGTTGAGGAACCGCACAGCACTGGAGAATCATCGAGTTATACTGGAGTGCACTGTGTCATCCCCTCACTCTGAGGTCAGCTGGCATAAAGGTGACATAGAGCTGgagtcgtctgaacacatggaTATTATCAGTGAGGGCTGCTACCATAAGCTGGTCATCCATCGGGTGGCAGTAGAAGACGAGGGGACCTACCGCATTGAAGTGGGCAAACACACCTCGACAGCCAAACTGCTGGTGGAAGCACAGTCCATAAAGGTATTGAAAGAGCTGCAGGACATGGAAGTGAGTGCTTCAGAGCCAGCTCAGTTCCAGTGTGAGGTGTCTGTACCTCTCGTGAAACCACCCATGTGGAGCCTTAATGGAGAAAACCTGCATCCAGGAGCCGACATTCTTGTGGAGAACAAAGGAACTGTCTACAgcataacatttaaaaagaccAGTTTGGACATGAGTGGAATAGTCAGATTCACTACTGGGAAAGCCAAAAGCAGTGCCAAACTGAAAGTCATATAGAGAGTACTGCACTCAACaagcaaatcagaaatgtataTGGTAGGTTAGTAGTGAGGCAAGATAGTAGGAACATAAACAGAATTACACTCATTAGTCTGTGCATATTTACTAAAACCTTTCCTGGGATATGGTCAATTTTCACACTGCCATCTCAATGTCAGCATATTTCAGTATTAAGGCTTATAGAAATTTGTATTTCTGGTCTAAATTCATTACCTTGGGGGGGATTAGACTTTTCTTAGAACAACCAacttcagtatcagtattgtaTTCAGATAGTAACATGGAGATATTTGATATGAGGTATTAATTCAATCAGAGATTTGCATACAATCCCCACATTCCCATGTTCCCATTACAATCATGatgcataaataattatattaaacttCTCAAAGACATTGCAAAACAATTATTTcatgataattaaaaataaacttgtgAACATATTTACACTTTCACTTaaaactgattctgatttttGCAGGAAAAAGCAGCAGAAATCTAAACTTACTAGAATGttttgctaggtggttgctgtGCTAACCCTGTTGGTTGCTAGTTGGTTGCTATCATCTTCCAGTTTGTTGTTGGGTTGTTGCTAGGTTGTagctatgctaacccagttggttgttaGGGCACTGCTAAGTGGTTGCTATCGTAACCCAATTGGTTGCTAATGCATTGCCATGCTATCCCAGtaggttgctagggtgttgctaggtggttgctatgctaacccagttggttgctagggtgttggtAGGTGGTTTCTATGCTAGACTAATTAGACTAACAATATAGTTAtcgttttaacttttctttctcccttccttttctttcttcctgcactttaactgtctgtgagctgctgtgataagtgaatttctcCACTGTGGgctcaataaagtttatcttatcttatcttatcttatttttcCTGGTTCTCTTTGAAAGCTCAGAGATATCAAGGTGAAAGCTGGTGAAGCAGACTGCTAGAgtttactgcaaaagaaaagtagatttggatttataatataaggtgTAATTTTCCTCTATTATTAACAtgctattttaatctttttaaaaattttaatctgTTATTAATGTGGAAAGATTGTTTGATGGTACATTATACCTAAATTAAATACCTGATTAAATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25936 lncRNA downstream 27540 4784833 ~ 4785735 (-) True G21751
XR_003404675.2 lncRNA downstream 35944 4775288 ~ 4777331 (-) True LOC113545964
XR_004579646.1 lncRNA downstream 47737 4763909 ~ 4765538 (-) True LOC113545947
TU25866 lncRNA downstream 113218 4699824 ~ 4700057 (-) True G21693
XR_003404663.2 lncRNA downstream 243603 4550571 ~ 4569672 (-) True LOC113545826
XR_004577182.1 lncRNA upstream 37687 4939698 ~ 4942727 (-) True LOC117596013
TU26169 lncRNA upstream 326075 5228086 ~ 5228366 (-) True G21944
TU26186 lncRNA upstream 365474 5267485 ~ 5268043 (-) True G21960
TU26189 lncRNA upstream 423148 5325159 ~ 5325523 (-) True G21963
TU26201 lncRNA upstream 428815 5330826 ~ 5331138 (-) True G21975
XM_026945422.2 mRNA downstream 93648 4717410 ~ 4719627 (-) True inha
XM_026945449.2 mRNA downstream 194808 4590384 ~ 4618467 (-) True igfbp2a
XM_026945646.2 mRNA downstream 329361 4475852 ~ 4483914 (-) True LOC113545959
XM_026945430.2 mRNA downstream 448104 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA downstream 448147 4359120 ~ 4365128 (-) False prelid3b
XM_026920302.2 mRNA upstream 264850 5166861 ~ 5201211 (-) False LOC113530384
XM_026920312.2 mRNA upstream 284431 5186442 ~ 5201211 (-) False LOC113530384
XM_026925778.2 mRNA upstream 308485 5210496 ~ 5219287 (-) False nufip1
XM_026925773.2 mRNA upstream 308485 5210496 ~ 5219287 (-) True nufip1
XM_026913359.2 mRNA upstream 362901 5264912 ~ 5324988 (-) False bin1b
XR_004577458.1 other downstream 354828 4458336 ~ 4458447 (-) True LOC117596286
XR_004577457.1 other downstream 365796 4447367 ~ 4447479 (-) True LOC117596284
trnaf-gaa_14 other downstream 481104 4332099 ~ 4332171 (-) True trnaf-gaa_14
TU25557 other downstream 556188 4256668 ~ 4257087 (-) True G21434
XR_004579840.1 other downstream 1035287 3750018 ~ 3777988 (-) True rab22a
XR_003403147.2 other upstream 209451 5111462 ~ 5201212 (-) False LOC113530384
XR_003403149.2 other upstream 209451 5111462 ~ 5201212 (-) False LOC113530384
XR_003403146.2 other upstream 209451 5111462 ~ 5201212 (-) True LOC113530384
XR_003403148.2 other upstream 209452 5111463 ~ 5201212 (-) False LOC113530384
TU26420 other upstream 632113 5534124 ~ 5536007 (-) False romo1

Expression Profile