RNA id: XM_026945567.2


Basic Information

Item Value
RNA id XM_026945567.2
length 4570
RNA type mRNA
GC content 0.46
exon number 26
gene id stk11ip
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4651006 ~ 4692028 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCAAACAACGTATCAACAATGTGAAACTGGAGCGGAAAGTAGCGTAACTAGAGCAATGTTTCTCACATTGTAACGTTTCTCAATATTGATTTCGTTGTGTCCACAGATTGTGTCTTGGTTGACAAAGAAGGTAACCAGCGTTGTCTTTTAAGAAAAGGAACATAGACGAGCAaagtttgatttgtttgtggAGGCAGTAAGCTAGTTAAGTCCTTGAGGATGTCTGCTACCCAGGACAGTCAGTCCACGCTTGTGCACAGCCTTGCCACACTGTTGCGGAATAATGGTGAATTTGTGTTGGATGGCTCAAGCACTTTGACTCTGCAGGTGACTTGCTTGCAGCATCTGACACATCTCTTTGAACAGTACCTGATCTCACGCACACACCAGCACGGCTTCCTGGCATTGCCCTCACACCCAGCTGATACCACCTCACTACTCCAGGTGCAGTTTCTCTTCGACATGCTACAGAAGACCATCTCGCTCAAGCTTGTACATCCACCTGGGGCAAGACTGCAGTCCATTGTGAAAATTTTCCCCTTTAAGTCTCTCAAGCACTTAGAGCTGAAAAGAATTCCCCCTCACTGTCTGGAAGGGCTACGTGGTGTCTACTCTCAGTTGGAGGTCTTCATCTGCTCTAAAAGCCTCAACACTTTGGAGGAGCTACTGTTACTCTGTGGAGGAGATCTCAGCACTGCTCTGCCTTGGATAGAACTTCACACTCTGAACTTCAGCTATAACTTTATTTCCTGTCTTGATGAATCCCTGAGTTTGTTGAATGTCCTGAAGTCACTGGATTTAAGCCATAACAAGATCCGGGAATGTGCCGAATTCCTGAAGCCACTCTATGAGCTCGAACATCTCAATCTTGCCTACAACAACCTGCGGAGGGCACCAGAGTTCGGCCTGAACACTAGAGCAAGACTGGTCACTTTGGTTCTCAGACACAATGAACTGGAAAGCATTAATGGAGTGGAGCATTTATCTTCTCTTCAGTGTCTTGACCTGGCGTACAACCTGCTAATGGAGCACACTCAACTAGCTCCACTCTCCCTTCTGCATAATCTCAACATGTTAACTCTAGAAGGCAACCCTCTGTAtttccaaaaaacacacagaaactcaACCGTGCGTCACCTTTCTCCACAAGCTGCTTTCCGAGGACTTCAACTGGATGGTTCTACATTGTCTGCCACTGAGCTTGCAGTCTTGCCAAAACCCAGGCAGCAGTCCCAAACACACCAAGTTGCCATGGCACCTGAGCAAACTGCACAGGACATGTCGAGTGGAGGAGGAGAGTTGAGTGACAGCTTGTCTATCATTGAATCAGGAGGAACTCGAGTTTACAGGAGGAAATCCAAGCATAAGGTGAAGGTGAGGACAGCTAGCATCTCAGAACCCAGTGATACAGAGCCTAGTTCATCTTCTTTGCAAGACATCATCCTGCGCCACCAGAAGGACATTGAGAAGTTGGACAGCTTCCGGGAGCAGATGGGTGAGGACTGGCTACGCTACCAGCATCATCTTCATGGCACTTCAGCCCATGTGTCTGTCCCCAGGGTGGACACACTCGTAACACAGCTGACTGCTGAAAACCACTGCAACCCTTCACCTCCACAACCCAAAGTCAATTGCACCATGCCCAGATTAGACTCTCACCTTGTCCCACTGCTATCCTCTGAGTcaaaaagagaagaggaagagatcTTGGGCTTTCAGCCTGAGACTGAATCTACCCTGAAGTGGACAGGCCACAGCTTTGTAGACGCTGAGTCTACCCTAGAGACAAGTCTAGGAGACCCACAGCCTCCAGAGAAGGCCTACACTGATCCACCAtttggagaagaagaagaggaccTTGGAGTGGACCTGTGTAGGCCTATGCTGGTCAGGGTGCTCTCTGAGATTGAGGATTTTAGCAGAAGAAAGGAGTCAGAGCCGCTATTCCTGAGAGTACACCAGGCTTATATTTTGGAGGTGGACATGCACCAGGGCTGTGTCAGGAGCCGATTTGAGCTGGACAGCTTGCGGCAGGTCACCACCTCTCAAGCCACCTGGACAGAGAAGGGCAAGGAGAGCTCTCACCCATCTCTAGAATTGCGCTTTAGCTACATTAGTCACGAAAGACAGAAACGACGCTACCTCATGCTGGATGATGATCCTCAGGAAGCCTTACAGGTTCTGCTGGAGTTGCTTTCTAGGGTAGCAGCGGAGAATGAGCGGCAGGCAGAAAaggtaaaaacagaaaatgctcGGCTACAGTGTCTGAAGTGCCAAGCTGAATTTTCCCAGCCTCCGTCTAAAAATCTGATGAGTGCCCTGTCTGAACCAGATGTCTATCACGGGTTACAAGacaagacagagaaagagcacACTGCTGGTGATACTGTGTTTTGCCCAGAATGCAACAGTGATCATGTGATCCAGCTAGCTGGCCAAACAGCTCCTTCCACCAGTACGCCAGTCCCCTGTGACTTTGGTCAGAATGGTGACCGATGCTTCAGATTTGATTATGTTGACACTCAGAAGCCCTTGATCCAGGGTGAATCTCTTCACAGCCCCATCCATGAAAGAAAGTCCTCTGAATCCTCTACACTGCCTGAGGGTACCACAGACACCTTCCTCACTGCTCAATGCGGCCTATTAAACAGTGTATCCAGTCAGATTGAGGACTGCCCCGACCATCTAATTAGCTTCCAGTCATCTGACAGCCAAGTGCTCAGCGATAAGGGAGTGTCAGAGGATGGGCTTGCTCAAAGCTGTAGTGGCTCTCAGTGGCTTCTGAACCACCAATCGCCTCAACACACACAAGGATATGATCTGCTGTCCGAAGATTTTGAAACTGTCGACCACCGGTTGAAGCTCTTCCTGGATGTGGAAGTTTTTGAGGGAGAAGAAGAAATTCATTGCTTCCTGAAAATGTCTGCTGTGAAATATGGAGATCCAGTAGAATTCTCATCTCTTATGGTTGTGTCCAATCAGCGCATCTACATCCTAGAAATGACCTCTCAGTCAGAAGGGCATCCATCAGAATGGCTGCAGAAGCGGGACAGCCATCGGCTGtgtgagctcagctacctggaGGTGGGTCTCGGTTCACAAAGCATCCACATGGAGTTTGATGTGAGAGCTGCTGCGTACACACTTTTGGTTCGCGACAGTGCTCGGTGCAAAAACTTCTTCAACCGACTGACAGCAATAGCAAGGGAACTTGCCCCAAAGTCTGACAGCAAGCTTAAGACCATCTCAACCACACGACTGAATCCCAAACACCATCTGTGGCCCCTGGTTTGTGAGGGCAGTAAGACAGGCAATGAAGAAGACAGCCATCCTCCATTCTTTTACCTGCTGGCCTTCCTCCATCTAGGTAACTCTTTGACCTCAGTGACTGTTCTGGCCACTCAAGAAACACTTTTCCTCCTTGATGAAGATCACCAATGGAGTAAGAGCTGCTCCAGACTTGCGGCCAATGAGGAGGCACAAACCACCAGCGGGCAGGTCACCGTTCGCGAAATGCAGCCTATCAGCTGTGTCAGCTCTATCCTTCTATTCTCATCTGATCCATGCCAGGTGGACATTCAACTTTatgatgagctggCTAAAGAGGAGAAGACATGGCCTTTAAGGGCTGAGGCTGTGAAGGAGGTCCAAGGTTTAGTGCACTGGATCAAGGACCAGTGGGAGGCCATGTTTGGGGTCAAACTCATCACTGCTATTCAGTAGTGACTTTGTTCCTCTTCTGCTATATTTTCTCTCATTGCACTGTTCTCAGTCTTTTTATGAGCACATCAGTTTGTTTGCACTGTCCACTTGGGTTTTCCACAGATTTTATCTATGTgtattatctatttattttcgGTGTATTATTAATGACAATGTTGCTTATTGTTCTAGGACATCATGCACTAGGTCGTGTGGAATAACATCATGATTTAGATGATGCAGAATATTCTCTTTCTTGCTGCAAAGATTTCATTAATTCAGTAGCCATGCATGTACATAGCTAATCAAAGTACGTTTGTTGTCACACATGGAAATATGCATTGCAACATAAGGCACTTTAATCAGAGGGTAATGTAGTCTGTTATGAATAAAGGTTGTATTGGAATCCACTATTCTTAACAGTTAGGATTAGGATGTATATGTTTTCAGTGGTTAATTGAGATCCATTTATAAGTATAAAGGCACCTGACTGTAAAATTAGTTTCAGTTTCTGCTAAGTGTATAGTGCatcatgtaaaagaaaattagAAGGTATATGACTGcattacatcacatcactgatccatatttctcttttttttttttttgggtgcgTTATCCCACGTATAACTGCTTTCATTCAGCACCTTGGATTGTATATTTTTTCTGGACATGTTGTCAGAACTTTCTTTTATGAATGCAAAATACTGTGTGTAGAAAAACACTGTTCATGTCACATAATTGTGTGAAGTGTTCATTTGTAAGCCTATTTATTCATGTACAGGCCCTTTTTCTATAGATTTATTTCAGTGGAAAAGaatggctttttatttttgctaccTAAATAAACAGTGCCTGTCTTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25744 lncRNA upstream 126667 4525923 ~ 4526332 (+) True G21577
TU25675 lncRNA upstream 195153 4457272 ~ 4457846 (+) True G21514
XR_004579534.1 lncRNA upstream 218263 4429407 ~ 4434736 (+) True LOC113545955
TU25662 lncRNA upstream 220516 4429422 ~ 4432483 (+) False LOC113545955
TU25610 lncRNA upstream 311659 4341127 ~ 4341340 (+) True G21475
TU25948 lncRNA downstream 116095 4808123 ~ 4808427 (+) True G21763
TU25957 lncRNA downstream 138875 4830903 ~ 4834058 (+) True G21771
TU25983 lncRNA downstream 187181 4879209 ~ 4902000 (+) True G21791
XR_003404676.1 lncRNA downstream 219775 4911803 ~ 4913793 (+) True LOC113545969
XR_004577063.1 lncRNA downstream 225117 4917145 ~ 4918634 (+) True LOC117595874
XM_026945450.2 mRNA upstream 65803 4566734 ~ 4587196 (+) True igfbp5a
XM_034312090.1 mRNA upstream 209358 4442811 ~ 4443641 (+) True LOC117599286
XM_026945573.2 mRNA upstream 227455 4392506 ~ 4425544 (+) False LOC113545914
XM_034310135.1 mRNA downstream 16559 4708587 ~ 4717273 (+) False LOC113545806
XM_026945421.2 mRNA downstream 16814 4708842 ~ 4717273 (+) True LOC113545806
XM_034310134.1 mRNA downstream 17011 4709039 ~ 4717273 (+) False LOC113545806
XM_026945633.2 mRNA downstream 62238 4754266 ~ 4759645 (+) False spega
XM_026920348.2 mRNA downstream 430692 5122720 ~ 5127596 (+) False wbp4
trnah-gug_1 other upstream 301251 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 911309 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other upstream 911309 3738253 ~ 3741690 (+) True LOC113545962
XR_004580290.1 other upstream 1074691 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 1285712 3340446 ~ 3367287 (+) False gorasp2
XR_004579614.1 other downstream 62238 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 396106 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 516318 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 1025502 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4758897 9450925 ~ 9454462 (+) False hmga1b

Expression Profile