RNA id: XM_026945608.2


Basic Information

Item Value
RNA id XM_026945608.2
length 2224
RNA type mRNA
GC content 0.38
exon number 5
gene id si:ch211-181l5.2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4004622 ~ 4008577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGCTTCAGCATGCATAACAACCTAAGGGAGGTTGTCTTTCAGAGCCAGACGCCTCagtgttcttttctctttcaataTAATCCTTTCTGGCAATTCATGTACAGCTTTGTTTGATCAACTTAAGCAGGATATTCCCTTCTCTTGGAGTCTCTCTTAGACTGTAGTATGAAGCCAGCAAAATGAATCGCACGGCTATGATGTATTTAGAAATTGGCTGCTTTTTGTGTTGCATTTGTGGATGGATTCTGATCTGTTCTACGCTGCCTACCGAGTACTGGAATTTCTCTGAGGTAGGTGATGCTGTACTCACCACGGTCAACTACTACTCCAACCTGTGGATGGATTGTGTATCTGACACCACTGGTGTTTCTGACTGCAAGTACTATCCTTCCTTGATGGCCCTTCCAGTTTTCTTGCATGTCACACGTGCCCTGGCCATTGTCTCTGTAATTCTGGGATTTTGGGGGTCCGTGCTCACCTTGATTGGAATGAAGTGCACGAAGATTGGGGGTTCTGAACTTGTTAATACAAGAATAACATTAGCAGCTGCCTTTACCTATATGGCATCAGGACTCTGTGGTATGGCAGTGTACTCCATGTGGGGAAACAGAATACGGGCAGAATTTGTGGATGTCAACTACAAGCCACAGAAatTTGAACTTGGTGCAGCATTATTCATAGGATGGGGAGGTTCCAGTTTGGTTATATGTGGAAGTGCAGTTTTGTGTTATTTCtctgggagagagagatttagcTCAGGGTCAAATGACACACTGGTTCAGGCAGATGCTTACACGAGAGCTCGATCGAGAGGGACATATGTGACTGCTCGAACCAGAGGAACCTATACGTTGCCTGCCTACTCCAAGGCCAATACAGCAATCATGCCCCCCTTATTCCAATCAGGCAGAGAGAGCAAGGGAACCAGAAAAACACAAAGGACATATACAGCCCGAAGGACAGCAGCGTCCGTGCCGCTCATGGATTCTTATGTGTGAAGCCCGTGTTTTGGAAACAATATATTGAGTGGATCTGACTTAGGAGCTCTTTCATCAAGAACAGATACCCAGGAAAAGATAACCAGGGATGAAATTTAATTATGTGAATTTATAGTACCCTCCAAAAAAAGGTATTTTTATAAAAGCATGCACATTCTCTGAAAAAGTAGTAATCAGTCCAttcagaataataattaaaaaaaaacctttgggtAGCTCATTCCTtacaatggatggatggatggataatagatttttttacaatttacaaaaatgtattcaCCAGTTTAACAGTAGGTGTGCCTTAATGGTACCACTTACAGCATATGTAAGATACATGATGTGTAAATCTCTCTCCTTAAAGGGGGATCCCTCTGTTTTTCCCAGACCAACATCACTTTTAGTTACCCTTACAAGACTTCTTCAAATTTCTGTTAATCAGTTAATCAATAGCTATTCTGTTAATAGCTATTGTAACTAAAGAACTATTAtgcattatctttttttttgtttttaacaatgATTCATTTTATCATTACATGTATGTTGCCAAAGAGCAACAAGGTACAATAAAGGAACATAACCCATTCAGAGGAAATTCTTATATGACCGACAGTCATAGTAGATGACAGTCACAGtctttgtaaagaaaaaaattatttttgaacataTTAGTTCATGCAGCATCGATAATAATGGGTAATAGcagtatattttgttttaaaaaaaatgcacatggagcaaacaaaaaatataactgTGAGTCAAACTTTTTGCGAGAACAGTGGGGGATTAGTCAGAATTCCTTTTGGGAGTgaatgggggggaaaaaacagttcCATGCACACCTCAGATACACAGATATGCATAGtcttagaaataaaaaagtaaagcacaatttaacaaaactgtactgtttacacacttttttccatgattaaaaaaaaatccatgaaaaTTTACTATAAATTCACATAAGGTTTAAAATTTATGTAAAATTTTTAACACTATATATCAATGACATTGTGAAGTACAAAGAAAAGTCTATATTGCTTTTGTGGTCCCTGAATAGTTTTGAACTTCACCACATGTACTAAGGATCTTGAGTATTATTACAGTTACTTGAATATTTATGTGTACGACTTGCAGCATATTAGCGCAAACATCTCTGAACATGTTCCATCAGCAGcattcaaaataaagaaatctgTTTAGTCCATTTTA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25493 lncRNA downstream 4986 3993879 ~ 3999636 (-) True G21377
TU25470 lncRNA downstream 72054 3932136 ~ 3932568 (-) True G21358
TU25413 lncRNA downstream 219068 3785140 ~ 3785554 (-) True G21306
TU25404 lncRNA downstream 289579 3713299 ~ 3715043 (-) True G21303
TU25222 lncRNA downstream 347950 3656395 ~ 3656672 (-) True G21153
TU25498 lncRNA upstream 554 4009131 ~ 4009340 (-) True G21382
XR_004579415.1 lncRNA upstream 35987 4044564 ~ 4062409 (-) True LOC113545971
XR_004579416.1 lncRNA upstream 35987 4044564 ~ 4048218 (-) False LOC113545971
TU25521 lncRNA upstream 68551 4077128 ~ 4077827 (-) True G21400
TU25449 lncRNA upstream 102705 4111282 ~ 4111654 (-) True G21341
XM_034314247.1 mRNA downstream 45803 3938000 ~ 3958819 (-) False stx16
XM_034314242.1 mRNA downstream 45803 3938000 ~ 3958819 (-) True stx16
XM_034314260.1 mRNA downstream 45804 3938000 ~ 3958818 (-) False stx16
XM_034314254.1 mRNA downstream 45804 3938000 ~ 3958818 (-) False stx16
XM_026945622.2 mRNA downstream 158898 3839963 ~ 3845724 (-) True tubb1
XM_026945452.2 mRNA upstream 15213 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945639.2 mRNA upstream 25494 4034071 ~ 4039284 (-) True cldn10a
XM_026945430.2 mRNA upstream 350543 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA upstream 350543 4359120 ~ 4365128 (-) False prelid3b
XM_026945646.2 mRNA upstream 467275 4475852 ~ 4483914 (-) True LOC113545959
XR_004579840.1 other downstream 226634 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 267736 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 967266 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2182060 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 2967048 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 248091 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 323522 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 438790 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 449759 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 804698 4813275 ~ 4902011 (-) False obsl1a

Expression Profile