RNA id: XR_004580246.1


Basic Information

Item Value
RNA id XR_004580246.1
length 1595
RNA type misc_RNA
GC content 0.50
exon number 11
gene id npepl1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3715807 ~ 3736886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGTTGTCAAGGTGTGAAAAAATTGACATGTGAATGCATTAATAACACATCTACAACCCGCAAACAAACAGCGTGTTGTTCAGGTGTGAACAATCGTGTAGTTTTGAGCCGAATGGCCTTCCATAATAAAGAGCCGGCTGTAGGAGTCGATTCATTCGCGAAAGAAAACATCTCTAGCCCAAACATGGCGAATGTACTGCTCGAGTTCAAGGCTTCAGTCGGTGACTTGGAGCCCCAGAGCTGCCCATTGCTCATCATCGGGCAGCTCGGATACTTGCAACAAATAAACTGGAATCAAGTTAAAGGGAAACTGCTGCCGGTGGTGACCAAAGAGACTTGGCAGTTGGCGTTAAGCAGTCTCAATCCCAACCCTACAGACAGTTGCCCACTGTATCTGAATTATGCGAGTGTGGCAGCACTGCCCTCTCGCGTAAGCCGTCACAACAGTCCATCCTCTGCCCACTTTCTTACTCGGTTGGTTCGCACCTGTTTGCCCGCTGGCAGCAACCGCTGCATCCTGATGCTGTGTGAACAGTCTGATGTGTTTGCATCAGCGTGTGCCATTGCCCGTGCTTTCCCACTCTTCACTCGCCGCTCTACCTCATGCACAATGGAGAAGAAGCGCGTCACCGTGGAGTTTGTCATTGTCGGCCAGGAAAATAGCCATTTGGATCCTTCCACAATCAAGTCTCTTAACAATGTGGCTGATGGTGTTCGTCTGGCAGCACGAATTGTGGACACTCCTTGCAATGAGATGAATACCGACCATTTTCTAGAGGAAATCAAAGCAGTGGGAAACGAACTGGGCATCACACCAACTATAATTCGAGGCAAGGAATTAAAACAAAGAGGCTTTGGAGgtATTTATGGTGTAGGTAAAGCAGCTGAACACCCACCTGCTCTGGCTGTGCTTAGTCACACCCCCTCAGGTGCCACTCAGACCATTGCGTGGATTGGCAAGGGCATTGTATACGACACGGGTGGCCTTAGCATTAAGAGCAAAAGCACAATGCCAGGCATGAAGAGAGACTGCGGCGGAGCAGCTGCTATTTTGGGAGCTTTTAAAGCCGCCGTTAAGCAGGGGTTTAAGGATAACCTGCATGCAGTGTTCTGCCTGGCTGAGAACTCCGTGGGGCCTACAGCCACCCGGCCAGATGATATCCACACACTGTACTCTGGAAAGACAgtggaaataaataatactgaTGCAGAGGGAAGATTGGTGCTGTCTGATGGCGTTGTATATGCAAGTAAGGATCTCTCTGCAGATATTATCCTGGATATGGCAACTCTGACTGGAGTCAGGGAATCTCCACTGGAAAATACCATGCTGCTATTATGACCAACAGTGAGCAGTGGGAGACGGCGTGTGTGAGAGCAGGCCGCAGCAGTGGTGATCTCACGCATCCTCTTGTCTACTGCCCTGAGCTCCACTTCAGCGAATTCACCTCTGCAGTTGCTGACATGAAGAACTCTGTAGCAGACCGTGAGAATGCCCAGAGCTCCTGTGCTGGCCTCTTTATTGGCTCTCACTTGGGTTTTGACTGGCCTGGTGTGTGGGTGCATGTGGATATTGCCTCACCTGTGCACACT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25404 lncRNA downstream 2672 3713299 ~ 3715043 (-) True G21303
TU25222 lncRNA downstream 61043 3656395 ~ 3656672 (-) True G21153
XR_004580296.1 lncRNA downstream 165764 3549631 ~ 3551951 (-) False LOC117599952
XR_004580294.1 lncRNA downstream 165764 3549631 ~ 3551951 (-) True LOC117599952
TU25043 lncRNA downstream 346592 3348308 ~ 3371123 (-) False tlk1b
TU25413 lncRNA upstream 48254 3785140 ~ 3785554 (-) True G21306
TU25470 lncRNA upstream 195250 3932136 ~ 3932568 (-) True G21358
TU25493 lncRNA upstream 256993 3993879 ~ 3999636 (-) True G21377
TU25498 lncRNA upstream 272245 4009131 ~ 4009340 (-) True G21382
XR_004579415.1 lncRNA upstream 307678 4044564 ~ 4062409 (-) True LOC113545971
XM_026945526.2 mRNA downstream 5958 3704874 ~ 3711757 (-) True ctsz
XM_026945439.2 mRNA downstream 179694 3530784 ~ 3538021 (-) False LOC113545819
XM_026945438.2 mRNA downstream 179694 3530784 ~ 3538021 (-) True LOC113545819
XM_026945432.2 mRNA downstream 282504 3427322 ~ 3435211 (-) True unc50
XM_034314878.1 mRNA downstream 302313 3393976 ~ 3415402 (-) True slc25a12
XM_026945529.2 mRNA upstream 13132 3750018 ~ 3777988 (-) False rab22a
XM_026945664.2 mRNA upstream 51584 3788470 ~ 3805598 (-) True vapb
XM_026945665.2 mRNA upstream 52057 3788943 ~ 3805609 (-) False vapb
XM_026945431.2 mRNA upstream 80631 3817517 ~ 3823283 (-) True LOC113545812
XM_034310822.1 mRNA upstream 80631 3817517 ~ 3822216 (-) False LOC113545812
trnaf-gaa_13 other downstream 680359 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 1895153 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 2680141 1028859 ~ 1037574 (-) False slc48a1b
trnaq-uug_1 other downstream 2756108 961536 ~ 961607 (-) True trnaq-uug_1
XR_004577153.1 other downstream 3064697 652731 ~ 653018 (-) True LOC117595970
XR_004579840.1 other upstream 13132 3750018 ~ 3777988 (-) True rab22a
TU25557 other upstream 519782 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 595213 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 710481 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 721450 4458336 ~ 4458447 (-) True LOC117596286

Expression Profile