RNA id: XM_026945639.2


Basic Information

Item Value
RNA id XM_026945639.2
length 1684
RNA type mRNA
GC content 0.43
exon number 5
gene id cldn10a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4034071 ~ 4039284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCACAACGCATCCTCCTGAACCACATACTGGAAACACTGCTATCCTGCCATGTAGTGACCATAACCATTCCTGACTACTGCTTCCTATAATAACTTTCGACTGGCACTATCGAATTACTGACTGCTAACTTCAAGTGATCTGGCTTTGTTCATATTTGAGCTCTTCAGGCTGGGAAAACTATGGGGAAAATGGTTACGGAGATTGTTGCTTTGCTACTTAGCATATCAGGCTGGGTTCTGATCTCCTCCACACTGCCCACTGACTACTGGAAAGTGTCCTCCGTAGATGGAACCGTAATCACTACAGCAACCTTTTGGTCCAATCTCTGGAAGACATGTGTGACAGATTCGACTGGAATCTCCAACTGCAAGGACTTCCCTTCCATGCTGGCTTTAGATGCTTATATCCAGGTGTGTCGTGGGTTGATGATCTCTGCAGTGTGCCTGGGTTTCTTTGGGGCCATTCTGGCCCTAGTTGGAATGAAATGCACAAAGATAGGTGGCTCTGAGACTACCAAGGCCAGGATTACCTGCTTCTCTGGACTACATTTTATCCTCACTGGTGTCTGTTCATTGGCAACATGTTCACTATATGCTCACAGAATAACCTCTGAGTTTTTTGACCCATTATTTGTGGCACAAAAGTTTGAGCTGGGGGCTGCACTGTTTATTGGATGGGCAGGAGCTATCCTTTGCTTTCTGGGGGGCAGTATCTTCTGCTTCTCAATGTCAGAGGGCTTCAGCATGAGAGAATACACTTACACCGGAGTCAACTCTTTCATGACAACTCGAAGCAAAAATGCCAACAGTCCTGCAAGTTCTGAAAAAGATGCAGCAGATCAAGGCTACTCTGTGAGGCAGTTTGGGAGGAATGCCTATGTGTAATATACCTCCACAGGAAAATTCTGTACAAAACTGACACTGATGCAGCCAATAAGAGCAAATGCCTATATTATAGGTTTGTAAGATGGACATGCTTTATGCACAACCATAATCACTAAGGGAAACTACCACAGATAACACATAGACCATCACTAGAGCAAGAAGATCTTAAGGCATTTCGTACTTTAGCATTAGTCTTTCTAAGAGCTAATCTACTAAGTACTAACTATCTAACTTTTcatatctgtgtatttttagatGTTTACAGATATTAAAGAGTTTGCATAGATTGCCCGGTCTGGAGTTACTAAAGCtttctttgtaatttttggGACGAGTGGGGGatgactggggaaaaaaaaggataataaaAGGCAGCATATAGTGAAGATGGAATGAGTCTTCTGTCTTTAATGGATGTGCCCTTTGCTGAATTGAGACCCAATAACCAAGTGAAGTGATGACAGACATTTATGATGTTGGTTCCTGTTGCGTACCTCCGGCTCCGGAACACGCTGTCTAGATGCGGAAATTAGATCAGCCTAGTCACCTATTCTTCGGGACCTAGCATCTGTCTCCACCTCATGATCAATGGAAACCCTAGACTTTGACCCCTGCTTCTCATAGATTTCTGGTGCGTTCCAGAGCTCTGCTGGGCTGGCAGCATGGCCTTTCTTTCCACCCACATGTTTCTGTGTTAAGTATTCCAGTACTGAATGTAGTGTTTAGTTATGTAATCTAATATAGTACACTGTTGTTGTGTTTagttatgtaatataataaagtacattatacttttaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25498 lncRNA downstream 24731 4009131 ~ 4009340 (-) True G21382
TU25493 lncRNA downstream 34435 3993879 ~ 3999636 (-) True G21377
TU25470 lncRNA downstream 101503 3932136 ~ 3932568 (-) True G21358
TU25413 lncRNA downstream 248517 3785140 ~ 3785554 (-) True G21306
TU25404 lncRNA downstream 319028 3713299 ~ 3715043 (-) True G21303
XR_004579415.1 lncRNA upstream 5280 4044564 ~ 4062409 (-) True LOC113545971
XR_004579416.1 lncRNA upstream 5280 4044564 ~ 4048218 (-) False LOC113545971
TU25521 lncRNA upstream 37844 4077128 ~ 4077827 (-) True G21400
TU25449 lncRNA upstream 71998 4111282 ~ 4111654 (-) True G21341
TU25441 lncRNA upstream 83711 4122995 ~ 4127844 (-) True G21333
XM_026945452.2 mRNA downstream 8093 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 25494 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA downstream 25494 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_034314242.1 mRNA downstream 75252 3938000 ~ 3958819 (-) True stx16
XM_026945430.2 mRNA upstream 319836 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA upstream 319836 4359120 ~ 4365128 (-) False prelid3b
XM_026945646.2 mRNA upstream 436568 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 551100 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 678126 4717410 ~ 4719627 (-) True inha
XR_004579840.1 other downstream 256083 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 297185 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 996715 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2211509 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 2996497 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 217384 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 292815 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 408083 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 419052 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 773991 4813275 ~ 4902011 (-) False obsl1a

Expression Profile