RNA id: XM_026945667.2


Basic Information

Item Value
RNA id XM_026945667.2
length 5114
RNA type mRNA
GC content 0.44
exon number 18
gene id ddx3xb
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4112174 ~ 4127858 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTTCCGCTCCGGTCTTATTCCATCACGGACACAGGCTAGCTGAGAGGCTTAGGTCGAATCGAGGTAACCGtagttttatatacatataaatatatatttaaaaagaaacaaaacagccATAAAATCCtagtatttgttattttatacgTGTGTAAGACATTTTTTGATCaaggaaacagtttttttttgaaagttgcCCCAAAAGAAGTCGATAGAAAAGCCGCAGAAGGAGGGAAGAAGCTACCGGCAAACAAAGGACCCGTTTCTGAGACAAACTCTTCCTCAACCCTCTTTAGTTATGAGTCATGTGGCCGTTGAAAATGCACACGGTCTAGACCAGCAGATTGCTGCCCTAGACTTGAAATCTGATGCCCAGGGAGGCGGCACTGGCAGGCGTTACATTCCACCTCATTTAAGGAACAAAGAGGCTTCCAAGAATGACTCTCCAGGTGGATGGGATGTTGGACGAAGCAATGGATATGTAAATGGTTTCCACGATGGCCGTGACAACTACATGAATGGGAGCAACACTTTTGGTAACCGTGGGCCCATACGTAATGACCGCGGAGGCAGAGGAGGTGGTTACAGAGGCAGGGGCGGTGGCTCCTATGTTATCCAACCAGTGCAAAACACAGGCTTTGGCTATGACAACAAAGATGGCGGTGGATGGAACAGCTCAAAAGATAATGCCTATAATAGCTTCGGTGGGCGTTCTGACAGGAACAAGTCTGCCTTCTACAACGATCGTGGATCTTCCAGGGGAAGGTATGAGCGTGGAGGTTTCGGGGGTGGCGGAAACAGTCGGTGGGTTGATGATTCCAGAGATGAGGAGGACTGGTCCAAACCTCTCACTCCCAATGAAAGGCTGGAACATGAGCTATTTTCTGGAAGCAACACTGGGATTAACTTTGAGAAATATGATGACATTCCTGTTGAAGCCACTGGCCACAACTGTCCTCAACACATCGAGAGTTTCCATGATGTAGATATGGGGGAGATTATTATGGGAAACATCACCCTGAGTCGCTACTCGCGCCCCACTCCGGTCCAGAAATACGCCATTCCAATTATCAAAACCAAAAGAGACCTGATGGCGTGTGCACAGACAGGCTCTGGTAAGACTGCAGCATTCTTACTGCCAGTGCTGAGTCAGATATACACAGATGGACCAGGAGAGGCCTTACAGGCTGTAAAGAACAGTGTCCAGGAAAATGGCAGATATGGACGCCGTAAGCAGTACCCCCTTTCTCTGGTTTTGGCTCCAACTAGGGAATTGGCTCTCCAGATCTATGATGAGGCTAGAAAGTTTGCGTATCGTTCTCGGGTACGCCCTTGTGTAGTATACGGGGGAGCTGACATTGGCCAGCAGATTCGTGACCTGGAGAGGGGCTGCCACCTGCTAGTTGCCACGCCTGGTCGTCTGGTGGACATGATGGAGAGGGGCAAGATTGGTTTGGATTACTGCAACTACTTAGTCCTGGATGAAGCTGACAGGATGCTGGATATGGGTTTTGAACCACAGATCCGTCGTATTGTGGAGCAGGACACTATGCCGCCTAAAGGGCTGCGCCAAACTATGATGTTTAGTGCCACCTTCCCTAAGGAGATCCAGATATTGGCACGTGACTTCCTGGAAGATTACATCTTCTTGGCTGTGGGCCGTGTGGGCTCTACCTCTGAGAACATTACCCAGAAAGTGGTTTGGGTTGAGGAGAGTGATAAAAGATCCTTCTTGCTTGACCTTCTGAATGCCACAGGCAAAGACTCTCTGACTCTGGTGTTTGTGGAAACCAAGAAGGGTGCTGATGCGCTCGAGGACTTTCTGTACCGTGAAGGCTATGCCTGCACCAGTATCCATGGTGACCGTTCACAGAGAGACCGTGAGGAGGCACTCCATCAGTTCCGCTCTGGAAGATGCCCAATCCTGGTTGCCACTGCTGTAGCTGCACGTGGTCTAGACATCTGCAATGTGAAACATGTCATCAACTTCGACCTGCCCAGTGACATTGAGGAGTATGTTCATCGCATAGGCCGTACGGGTCGTGTGGGAAATCTTGGTCTTGCCACCTCATTCTTTAACGACAAGAATGGCAACATTACAAAAGACCTCCTGGACATCCTGGTGGAggccaaacaggaagtgccATCCTGGCTGGAAAGCTTGGCTTATGAGCATCAGCACAAGGGTAGCAACCGTGGCCGCGCAAAGAGGTTCTCTGGGGGCTTTGGAGCCAGAGATTACCGTCAAACCAGCAGCAACACCACTAACGGAGGCTTTGGGAGTCGTGGCAGTCGTAATGCTGGTGGCCATGGTGGCAACCGCGGATTTGGTGGTGCTAAGGGGGGATTTGGAAATTTCTACAACAGTGATGGTTATGGTGGAAACTACTCTCAGGTGGACTGGTGGGGAAACTAACTTGTTAACCACACACGCACCTTTCCACTCCCCATGATCAGTGGGCCGCCACACCAAACTCACTGAATGGAAACCACATGTAATTAAGCCAGGCTATAAACCCTGTGTAGCATTCAAGAACTCTACAGTACATTAACACCTGTGATTCTCTGACCACATCCTGGAATACTGCATCACTGGCTCTAGGAGATGGGAGACATTGGCCACAGGAGGAACCTGTCTCCAGACTTGCTTGTCTGtagaaagacaaaaaggaagaaaagtggAAATGTTACTTGTTTTggctcttattattattattttttttttattccactaCATCACATTGCTTTCTTTGTAGTAAAGGAGAATCATTTGTTTGTCAGTGTACTGTGCCTTTAAATTTGgacttttttgtcttgttactTTTTAAACATCAAATGGCTGATAATTAGCCACAgatttgtattttgtgtttaagtTTAAGTTCTTCAAAAAATTTTGGTGTTTGAAGGCACAAATTAAGATTAATCAAACCTTGGCAAACTCAAGGAAGGTTTGGCTCTGGAGTCAAAACCTTGTTCTGAACATCAAATTGATCACAGGGTCACCAGGCTCATTTCAAAAATGTACCTGTCCCTACTTACATTGGTTTCTCCCCTTGCCTCGCAAGGGAAGGAAGATCTTAATGAAAATGTTAATCTTGCTCACTCTATCCTGGAGAGGTATCTCTAAGGGACGTGGTAGTCATCTGAAAAAGATTTAGCAAGCCATTCCAATTTAATATCCGTAACCATGAAGTGAGCAGTTTGTACCTCCATTCACCCCCAGTGTTTGGATGCACAACATTTGTATGCTCTTATGTGAATCAGAACATTTTCAGGCAGCTAGTTCAGAAACAGTCTAGCTGTTTGGAGGTGTGCAGTCTCTTCAGTCTGTTCCTTACTTGAACTTTTGTGGAGTGGCAATTAtgtgttttatactttttacTAAATACTTTTTGAAATGGACAAACCAGTGGACTATGAGCTACTGCGTCAGTGAAAAGTTCAAGTTGCTATATTCGGACCGGTGTCAGAGTGGACAGGCCCTAAATGCCAGGCCCATCTCTGCAGCAATTCGCATGGCAagtgttcttgttttttttggtcaagGAGATAGTCCGACAAAATTTTCTGAAGCAGGCTTTCCTTTTTGCAACAAAGAATATCATGGAGATTTTCATTTCCACCTTTTTCCCAAGTGGCCCAGAATTTCAGCCATCTGTGGTCTAGAGACACGGCTTCCCTGTAAGACCTCTGAAGGATGTGGGGGAGGGAAATCAGGAATAATGTACACAGGAAGAGGAATTGTACAGGGGGAAGCAAAGTCTAGTGGCATTGGAGTCTTGActaatacacttttcttttgtaGTAGCTGGTGTTTCCTTGGTGTCTTGGCCAAAGTAATGGTTGCAGTTCTCCTTCCCACCCTCAGGTTAATTGAGGACCTCGGTGATAGTGTGGAGACGTGATCATCAATCACTCATTGCAACTGGCAGTGACTTCCTCTCCCTTTAAGGAGTTGAGGTGTGAAGGAGGGGGGGGGACGTGATACTACATTTTACTGAAGTGCAATAGATTTCCTCAAGCATGTTGTGCcttttgacatttaaaaaagtttagGTGAAAATGGTGAACTGAAGTGGATGCACTTGACCAGTATTGTGGTAACTTGAGACAAGTGGTGCTATTTAGGTGTAGGCCCTTGTATGTTATGCCCATCAAGTTTTACAAAACGTTATTTTATTGCACATCAAGAGTTTTATATAAAAGTCTTCAGTGTGTGTCCTTAAGCTTCCAATATTCTGTGTaaagactgtaaaaaaaaaatgcagcttgtttaCAAAACGGAAGGGTTCTCAATATTTAGCCAGGATTAATTTGGGACCAGGGAATCGGCAATGGGGAAATTTAGCTACTTGCGCACACATTACTAGATTCTACTTTTTGCTGCTagtttgtgtaatttattaagcatttttgagaaatatttatttttataaacctAAAAGTGATCGTTTCATGTTAACTTGACCAAAAGACCGTACAAAAACACTGGTACTTGAATGTTGAATGCCACCTGTATGCGTGAAACTTCTATTTTTCGGGGTAGTGTGAgctttttaatgtttaaggTCATTTTGAAATAAGTCAAAATCCTCACTTATAGACTTCTGGCCAAATATTCCTCCTATCAAAGAAATGAATTGGCAGCCAAAACTAAACACCATGCCAAGGTTTGGACAACaggtaaaaataattttgtaattatatCAGTGCAGATTAACCCAgggtttgtttttggtttattttttttttgtttttcttttgtgttttttaaagaagtGATTTAATTTTGCCCCCAGTGAGTGTCTGGCTGATGGCAATCTTAAGGAAAAACATGTGGTCCTTCTGTTGCATTTGCAGAAATTTGGCATTTGGAAACCTTGTTCTCTGTTTTGGTGCTAAATTAGTCTTAATTACAAAGCAGTTgagtttaaataaagtgcactgGACAGGAAATAAGGTTTTTATTCACCAActcataacaacaacaaaaaaaaaaatcagtggagCCCGTAGAGTGAAAATTTGCTTTGTGTACTAGTTTAAACATTGTGCACTGTATGTTCTTTatgattttaagaaaataaagttAGAAATGCAAAGTGCAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25377 lncRNA upstream 470 4111200 ~ 4111704 (+) True G21281
TU25365 lncRNA upstream 98277 4013670 ~ 4013897 (+) True G21271
TU25363 lncRNA upstream 99494 4012375 ~ 4012680 (+) True G21269
TU25361 lncRNA upstream 116386 3995500 ~ 3995788 (+) True G21267
TU25347 lncRNA upstream 176801 3934774 ~ 3935373 (+) True G21255
TU25391 lncRNA downstream 28142 4156000 ~ 4156320 (+) True G21293
TU25395 lncRNA downstream 74698 4202556 ~ 4204963 (+) True G21297
TU25570 lncRNA downstream 147215 4275073 ~ 4327784 (+) False slc32a1
TU25604 lncRNA downstream 208396 4336254 ~ 4336636 (+) True G21469
TU25610 lncRNA downstream 213269 4341127 ~ 4341340 (+) True G21475
XM_034310200.1 mRNA upstream 1851 4060891 ~ 4110323 (+) False LOC113545970
XM_034310197.1 mRNA upstream 1851 4060892 ~ 4110323 (+) True LOC113545970
XM_026945604.2 mRNA upstream 106839 3969785 ~ 4005335 (+) True dzip1
XM_026945572.2 mRNA upstream 191566 3854960 ~ 3920608 (+) True gnas
XM_034314417.1 mRNA upstream 369868 3740020 ~ 3742306 (+) False LOC113545962
XM_026945495.2 mRNA downstream 7194 4135052 ~ 4244437 (+) True LOC113545870
XM_026945496.2 mRNA downstream 7194 4135052 ~ 4244437 (+) False LOC113545870
XM_034311908.1 mRNA downstream 7960 4135818 ~ 4244437 (+) False LOC113545870
XM_034310130.1 mRNA downstream 194348 4322206 ~ 4327860 (+) False slc32a1
XM_026945440.2 mRNA downstream 195780 4323638 ~ 4327860 (+) True slc32a1
XR_004580256.1 other upstream 370484 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other upstream 370484 3738253 ~ 3741690 (+) True LOC113545962
XR_004580290.1 other upstream 533866 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 744887 3340446 ~ 3367287 (+) False gorasp2
XR_004577413.1 other upstream 925174 3182307 ~ 3187000 (+) True LOC113545950
trnah-gug_1 other downstream 223819 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003404681.1 other downstream 532151 4660009 ~ 4660123 (+) True LOC113545978
XR_004579614.1 other downstream 626408 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 960276 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 1080488 5208346 ~ 5208864 (+) True G21901

Expression Profile