RNA id: XM_026947391.2


Basic Information

Item Value
RNA id XM_026947391.2
length 2568
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113547077
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11832707 ~ 11892740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACAAGCGCGCGCGCGCTCGGGGAAGAGAGAACTCGACCTGTTGGTATTCATATCCATATCAgactgagaggagagagagagagagagagagagagagagagacacacacacacacacacacatacagagactgagagagagagagagagagagagagagttttttaAACACCATTCAGTGAGAGGTGGCCATTGGCGCTTGAGAGAGAGCTCATCACCTcagagtgtttttttctcctgtggCAGAAGTTGCGTCGCTCAAGCGCAAACTTTTCCCCTTGTCACCACAAGCTCGGTGCAGCGGGTTGTGTTTGCGTGGCGCGGCTGTTGGCGTGTGCTGAGTGTGTCCGGTGTATGTTCACTCCACGGGACTAAGCGCAGTCGGAAGGTGCGATGAGGCTGCTCGCTTGGAGTTTGCTAATCCTGAACCAGTGGATTCTGCGAAAGGTTCATGGCCTGGAGAAGCAGGTTGGGAAATCTTTGGATTACCTGGAGCTAGGCACAGCAGGGTCTGTCCTAAAGCCCCTTCCTTATGGTGGAGCTGGTGGAGGGGGCATAGGGGCAGGTGGAGGAGTTAAACCCCCATTCCAGACCTCCAGGATATTCTCCTCTATGGACCACACACCTATGAAAACCAAGCCACCCACATTTGGCTTACCGAACCCATATGATTGGGCCAGGAACCAGTCACAGTTCCTGGATCAGACAGGCTACCACTCCAAACGCAAACCTCCCCTCAAAACTGCCATGAAGACCAAAAAGATCTTCGGCTGGGGCGACTTCTACTTCAGTGTCAAGACCCTGAAGTTCAACCTCCTGGTGACAGGCAAGATTGTGGACCACGTCAATGGCACATTCACTGTCTACTTCCGCCACAACTCATCGAGCCTAGGCAACGTGTCTGTCAGCATCGTCCCACCATCGAAGGTAGTGGAGTTTGAGGTGATTCAGCAGCAAAGTATCCTCCATCAGCCAGAGATCCAGTTTCACCAGCCTCATCAGTCAACCATTGATCCCAAAGACATCAAGACCTTCAACTGTCGTGTAGAGTATGAGAAGACCAACCGCTCTAAGAAGCCCAAACCATGTCTGTATGACCCATCTCAGACCTGCTTCACTGAGCACACCCAATCCAATGCTGCCTGGCTCTGTGCCAAGCCCTTCAAAGTCATCTGCATCTTCATCTCCTTTTTCAGCATCGACTACAAGCTTGTGCAGAAGGTCTGTCCAGACTACAATTTTCAGAGTGAACAACCTTACTTTGGATGAAGAGTACCAAAGTGAATGAAGTAGAGAATGACCAACATATGGGATGTtgttatgtgttgtgtgtctcTTCTACTTTCTTAAGGTTATATGGATCCCATAAGAAATGGTCAACATGGTGGACAGTGAGTTTTTACCAAGGTGCTGAGGAGAGGTTTTTGTTCCAAGTTTTCTTTGTACATATTGTGAACAAAGCCAACTCAGTTAAGCtcaattaaatgaatatttatttattgtttttgttgaatTTTGTCTGTTTGACTGTTAGAAATTTGGGAAGAATGAAAGATACAAAGTGAATTTTATATGACCCTGAGCTCTCAGAAATGTCATGACGATGATATTATAAATGTAAGGAACATAGCACTGATTGTAATAGATTCAAAAACTGGAACAGCACCCAGTGATATTATATTGTGCACCCAGTTTTAAAGCAGCTTATCATCACACCTGCAGAGGATGTATATTACACTGTCAAACTTACAGTGTAAACAAGACACAAAGTGGACATAGATACTCTTCATCAGGAAGGTATTCTGTTGTCATTGGGACATCTAGCAAATGTTCAACACAGCATATGCAACcagaaaatacatatatacatgtattcCCAAAATGTCACTTGATTTTAGATTATAGTCTATTAATGGAAGAGGGGGCATTCTTTCTTCCCAATATCTGAATAATATAATACTacataataatatgataatactAATCTTGTTTTGGATTCTCCTGTTATCTAAATAGTAGAACTTGGATTACAAACAGTTGTTTAAATGAATTGTGCATTATGAGGAGATGTTGGTGATTAAAGCTGCTATCCTAAATCTATGAAAATGTATATGCATTAGTACAGACTCTGTGCCCTTATCCACCCTATAGATAACCAGTGGATGAGTGAAAAGTAACGTATGTAAAGAAAGAGATCACCATTAACATAATGTGTCTAGTGGAAGAaccaattaaatataaattaaatattatttttctatactCTGGCTTAATTTTGACCAGATACAAATGCAGATACATGGCTGTTATTGAGTTGCTGACACATGAAAATGGTATAGTCACATCTCATATTagtccttttattttattctgttttgtttgcGCAGTAAAGCACCAAAAGATATTCTCTTAATTTCTGGACAACCGATTagtctgtgaaacatggaggctAAAGAAGAACTGAAGTCGCAGGTCTGTGAATAAAGTATTGCTTGATGATGTGTATATTTGACATTGaaaataattgtgtgtaaataatctatcacaaaataaataattaaatctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403548.2 lncRNA upstream 27248 11803590 ~ 11805459 (+) True LOC113534932
TU30103 lncRNA upstream 40582 11732424 ~ 11792125 (+) True G25452
XR_004579590.1 lncRNA upstream 144483 11668819 ~ 11688224 (+) True LOC117599151
TU30080 lncRNA upstream 169613 11662230 ~ 11663094 (+) True G25434
TU30064 lncRNA upstream 209638 11619169 ~ 11623069 (+) True G25422
TU30282 lncRNA downstream 53353 11946093 ~ 12038014 (+) True G25624
XR_003403381.2 lncRNA downstream 64488 11957228 ~ 11974989 (+) False LOC113533008
XR_003403384.2 lncRNA downstream 64513 11957253 ~ 11974989 (+) True LOC113533008
TU30578 lncRNA downstream 382112 12274852 ~ 12275052 (+) True G25872
TU30588 lncRNA downstream 400183 12292923 ~ 12293129 (+) True G25882
XM_026927166.2 mRNA upstream 72104 11754563 ~ 11760603 (+) True LOC113534407
XM_034312212.1 mRNA upstream 79489 11695631 ~ 11753218 (+) False LOC113526407
XM_026923995.2 mRNA downstream 9478 11902218 ~ 11937563 (+) True shmt2
XM_026927376.2 mRNA downstream 127506 12020246 ~ 12026634 (+) True h6pd
XM_026917519.2 mRNA downstream 139307 12032047 ~ 12035789 (+) True cenps
XM_026911066.2 mRNA downstream 290307 12183047 ~ 12203172 (+) False cfap20dc
XM_026911010.2 mRNA downstream 290361 12183101 ~ 12203172 (+) True cfap20dc
TU29627 other upstream 924135 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1078085 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1634252 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1925536 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 2235853 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 311789 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 633430 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1373287 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1603116 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1603117 13495857 ~ 13499365 (+) False tshba

Expression Profile