RNA id: XM_034297729.1


Basic Information

Item Value
RNA id XM_034297729.1
length 7310
RNA type mRNA
GC content 0.47
exon number 48
gene id LOC113527823
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19477978 ~ 19500607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTATTTGCAAGGAAACGCCTAATCTCACCACCCAATCCTCACTGGGAGTACAACAAGGCGACGGCTAGATGCTTTTTCCCCCTTGTCAGTAAACACAGCCAGGGGGAGAAAAGAACTCAGCCATGGTGGTCTTAAGACAGGGCGATTACGTGTGGGTGGACTCTAGCATAGGTGTACCGATCGGTGCTGAGGTCAGAATCTCAGAATCGGGCCAAATTCAGCTCATAGATGATGAAGGAAAGGAGCACAAAGTCAAGAAACAGGACAGCTCCCTGAAGCACATGCACGCCTCTTCCATTAATGGCGTAGACGACATGATTCGGCTGGGCGACCTCAACGAAGCTGGCCTGCTCAGGAACCTTCTGATTCGCCACAGGGAGGGAACCATCTATacATACACAGGGTCCATTCTGGTGGCAGTGAACCCATACCAGCTGCTGCCGATCTACACTCCAGAGCAGGTGCAACTGTACACAAACCGCCGTCTAGGTGAACTGCCCCCGCACGTGTTCGCCATTGCAGACAGCTGCTTCTTTAACATGCGCCGCAGACGCCAAGACCAGTGCTGCATCATCAGTGGGGAGTCTGGTgcaggaaagacagagagtacCAAACTGATGCTGCAGTTCCTGGCAGCAGTGAGTGGACAGCGATCATGGATAGAGCAACAGGTCCTTGAGGCTAACCCCATACTGGAAGCCTTTGGTAATGCAAAGACAATTCGTAATGATAACTCGAGTCGATTTGGGAAGTACATCGATATCCAGTTCAGTAAGGGGGGAGCCATTGAAGGAGCCCGCATTGAACAGTACCTACTGGAGAAATCACGTGTCTGTCGACAGGCTCAAGAGGAGAGGAACTACCACATCTTTTACTACATGCTGATGGGCATGCAGGCTGAACAGAAGAAAATTTTGTCTCTGGGTAATGCTGTGGAGTACAACTACCTGACCATGGGCAAGTGCACTTCCTGTGAGGGGCGGGATGATATAAAGGAATACGCCCACTTCCGCTCAGCCATGAAGATCTTGACATTCACAGAGAACGATTCCTGGGAAATTCACAAGCTGCTTGCTGCCATCCTCCACCTAGGCAACATGGACTTTGAAGccACCGTTTCAAATAATCTGGAAGGCTGTGATATCATCACCTCTACCCATTTCAAAATGGCTGCACAGTTGTTGGAGGTGGACATAAAGACTTTAGATACAAGTTTGACTCAAAGGTCCTTCATGACTAACAGAGAGAGTGTATCTAAACCTCTTTCCTCAGACCAAGCAAGTGATGGCAGGGATGCCTTTGTAAAGGCCATCTATGGAAGATTGTTTGTGTGGATTGTGGAGAAAATCAACAGTGCCATTTTCAAGCCACCCTCTGAGGAGTCCAGCGATACCCGTAACTCAATAGGCTTGCTAGACATCTTTGGATTTGAAAACTTCAAGCAAAACAGctttgAACAGCTGTGCATTAACTTTGCCAATGAGCAGCTACAGCAGTTCTTTGTGAAGCATGTCTTTaagatggagcaggaggagtaCGCCAACGAGAACATTGTCTGGAAACACATCGACTACATCGATAATCAGGGCACCCTCGATGTGCTGGCCAGCAAACCTCTCAACATTCTTTCTCTTATTGATGAGGAGAGTCACTTTCCTAAGGGCACAGATTCAACTTTGCTGCAAAAGATGCGTAAGTTTCATGATAAAAGCAAAGTCTACATCCCTCCTAAGAACAGTTATGAAACGAATTTTGGAATTGAGCATTTTGCTGGGCCAGTTTTTTATGACTCAAAAGGTTTTCTGGAAAAGAACAGGGATGCTCTTAGTTCAGATCTCATCATGTTGGTGGAAACTTCTACCAATAAGCTCCTCAAACAGATCTTCCACAGTGAGCTCTCCATCAATGGGAAGAGCAATGCCAACCCCAAAATGATGATCACCTCCACGAGCTCTTTGCGGCAAATGACAGACACTAAGAAGCGAGTACCCACTTTATGTGGACAGTTTCGTCAGTCTCTGGACTCCCTGATGAAAACTCTGACTGCATGCCAGCCTTACTTCATTCGCTGCATCAAACCAAATGACTTTAAGAAACCCATGCTGTTTGACAGAGAGCTGTGTCTGCGTCAGCTGCGCTACTCTGGCATGATGGAGACCATTCGCATCAGGAAAGCTGGCTACCCGATCCGTCACACCTTCCAGCAATTTCTTGATCGATATCGTGTCCTACTCAACTCTGTCATCTGTGACCCAAAAACGGAGAGTGCCAAGGCATGCAGTGAGAGTATTTGTAAGAATGTGCTCAGTGATGGTGATGACTGGAAAATTGGCAAAACCAAAGTGTTTTTGAAGGATTTTCATGATACCATGTTGGAGCTGAAACGGGACAAGGCCTTGAACGAGAAAGCGCTTATTATCCAGAAAGTCCTGAGAGGATACAAGCACAGAAAACAGTTTCTTAAACAAAGATCTGCAGCTGTGGTTGTGCAGAAGTATTGGCGTGGACACAAAGGCAGAAAATTCTATAAAATTGTCCAGTTGGGATATGCTCGTCTTCAGGCCACTGTACGCTCTCGTCAGTTAGCACGCCAGTACGAACTGGAGCGTAAGGCCGCCTTGCTGCTGCAGGCGCAGATCCACGCCTACTTTGCCAGGAAGGAGTGGAATCAAAAGAGAGGTGCTGTCATCCTCCTACAGGCTCATGTCAGAGGCATGCATGCCCGGAAAACTGTTCAGAAGATGAAGAACGATGCCTTTTTGTCACTGCAGGAGCGGAGGGCAGAAGAGCTGGCTGCtcaggagagacagaagaagcTAGAGGCTATTCTCCGtcagaagaaagagaaagaggctgCCGAACAGTCTGAGTTAATCAATGATCAGGAAATGGTAGACACAATCTTTGGCTTCCTGCCCAGCATGGTGGGAGGGCAGGAGGGCCAGGCACCTTCGGGCTTTGAGGATTTAGAAGGAAAGCGGACTGTGTTAGAGGAAGTAGACCTGGATGATGCTCCTATGGAGGATGAGATTCCTGAGGAAGACTATGATGATCTGGATGAGTACTCATTCTCCAAGTTTGCATCTATGTACTTCCAGGGTGCTGCTACACCCATTCACATCCGCCAGAGACTGCGCCAACCGCTGCTGTACCATGAAGAGGAAAATGACGTGGTGGCTTCTCTAACAGTGTGGTGGATCATCTTGAGGTTTATGGGAGATCTTCCTGAACCAAAAGCTCAGAAAGTCCCAACAAGCAGATCAGCATTTGCTGATTACTCCCTACAGCAGGATGTGGCATCCAGGCAAGACAGACGTCTCAGCCACATGGTTGGACTGGACCAGaaactgtTGAGGAGCAAAAACATAAGGAAAGACTCTTCAGCCCCAGAAGCGCTACCTCAGGGCAGAAAGTCATCAACATTTACAGATCTGCTGtcaggaaaaaggaaaacatcAACCATGACAGAAGACATTGTACCAAACCAGAAAGCTTCCTCCATACCATCGGAAGGTCCCAAAAACAGGAAGTCCTCTACCTTCGCTGATCTGCTGACCCGGAACAGAAAGACATCCACAATCCCTGAGGAAACGTCATCAAATAGAAAGGCTTCCCGAAAACCATCCATCATTGAAGAAGAGCCAGAGGATGGCTCTGAAGTTTCCAAACCACCCACTATACAAACTATTAGTGAGGAAGTGGAGAACATGATTGATGAAGGACTCACCCTGGACCGTCCACTCACATCTCTTGAAAAGTTGCACATCATTGTAGGATATGGCATTGTCAGACGTGACCTCAGAGATGAGATCTACTGTCAGATATGTAAGCAGCTCCAAGAGAATGGAAATCGCAGCAGCTTCTACCGAGGCTggatccttctctctctgtgcctggGCATCTTCCCTCCCACAGAGCGCTTCATTAAGTACCTGCAAAGCTTCATTCGTCTCGGCCCTGTTGGATATGCTCCATACTGTGCAGAAAGGCTGAGGCGCACCGTGGCCAATGGAGTGCGTGGAGAGCCTCCCAGCTGGCTTGAGCTACAGGCAACCAAGACTAAGAAACCCATGGCCATCTCTGTGACTCTTATGGATGGGCGAATTCTCAGTCTGCCTGTGGACTCGGCATCTACTTCTAAAGAAGTCTGCCAGATTATCTCACAGAAAATTAAACTAAAAGACACGTTTGGCTTCTCTCTTTATGTAGCTGTTTATGACAAGGTATGGTCTCTTGGCAGTGGACATGAGCATGTGATGGATGCTATATCACAGTGTGAGCAGGAGGTGAGGCGGAAGGGCGGGCAGGAGCAGCATGCCCCCTGGCGTCTCTACTTCCGCAAAGAGATCTTCACTCCCTGGCATGACTGCAGCGAGGACAGCACCAGCACAGACCTCATCTACAGACAGGTCATTAGAGGACTGAAGTATGGCGAGTACCAGTGTGAGAAGGAGGATATAGTTGTCCAGTTGGCAGCGAAGCATTTCTTTGTGCAGTATGGCTCAGACGACAGTATGGAGAAGGCTAAGAATGTTGTTCAGGATTGTGTTACCTCCAAGCTACTGGAAGACAAGTCAGAGGCCAAATGGATTCAGATGGTCCACACAGCACATGTTCAGGGTCCGTATATAGATTCAAAGACAAAAGCTGATCACATAAAAGCAGAAGTGGTGGACTATGCACGCCAGAAGTGGCCAATgttcttctcaaggttcttTGAGGTTTCCAGGATTTCAGGACCTTCACTACCCAAGAACAAATTTATCATGGCTATCAACTGGACTGGAATAACCTTCCTGGATGAACGTGAGAAGAAGTTTCTAGAACTCTCCTACCCAATGGTGAATGCCATAAACACCAAGAGAACCCAGTCTGTGTGTCTGCTTACTCTGAAAGGAGACTTCACGCTAGGCACAGTCAATGCTGGAGATATTGTTGATCTGATAGTTCTGTTCCAGACTGGCCTAACAGAGCGCTCTCAGTATGCTGTAGCTCTGCAGGAGGTCAACAGGCAAGATGATCCAACCTTTCTTAGTTTCAAAAAAGCAGAGCTTATCCTCCTTATTAAAGACAATGAATTTTCTTCCAACCATGGCTGGGTGAAGGGACAGAATGAGCGAACTGGACAAAAGGGGGCAGTACCTACAGATGCCATCTACATTTTACCTACTTCCACCAAACCCACTAATGAGGTCTTGAGTTTGCTCAGCATGTCCCCAGATCAGAGAAAGAATATGATTAACGACACTATCAAAGGAACTATTGCAGAAAGAGTACCTCGTGCAACGCTTAAAGAGTTCTCCATTGAGTATTTCAGaCCTCCCACTAAAGATGTGAACAGGCAGGTGATTTCTAAAAACATGGCACCTGAAAGGCTATGGGCAAACTCCAGGGAGCCCATGAGACAGCCCCTGCTTAAGAGATTGCTGGGGAACCCAGAGCTCAGCCATCAGGcctgccaggccttcactgCAATCCTAAAGTACATGGGCGACTATCCCACCAGACAAATTCAGAGTCCACTGGAGCTCACAGACCAAATCTTCGAACCAGCCACTCAGAATGAAGCACTCAGAGATGAGATCTACTGCCAGATCATGAAACAGATGACAAACAATAACAACCGGCACAGCATGGATCAGGGTTGGCAGCTGCTGTGGCTGTGTTGTGGTCTGTTCCCCCCCAGTAATTCATTGCTGAAACATGCACAGCGCTTTTTGGACACCCGGCGGCGGGAGCCATTAGCCCCTGACTGTCTGCGTAGGCTGCAGGGTGCTCTGAGAATGGAACCCAGGAAGCTTCCTCCTCACCAGGTCGAGTTGGATGCCATTCGACAGAACCGTTTTAAGATCGTACACAAAGTCTTTTTCCCTAATGACACAGACGAGTCATTTGAAGTTGCAACTAACACCAAGATCCGAGACCTGATCAAAATTATCGCCAATAATCTCGGCCTGATCTCAGACGATGGCTTCAGCATCTTTGTAAAAACACAAGACAAGGTTCTGAGTTTGAGTGAGGCAGACTACTTTTTCGACAGTCTGAGACAGATCACCGACTGGTCCAGAAAAACTAAGATGGTGAAGGATGGAGGACCAGTGAACATTCCATACCAGGTATATTTCATGAGGAAATTGTGGTTCAACGTAATCCCTGGCAGAGATCAGGAAGCAGATCGCATCTTCCACTATCCCCAGGAGTTGCCCAAGTATCTGCGCGGGTACCACCGCTGCACTAAAGAGGAAATGGTGCAGCTGGCCGCACTCCTCTTCAGGGTTAAAGTAGGAGATGATAAGACTCAGTTTGTCATGATCACTAAGATGCTGAAAGAGCTTGTGCCCAATGATCAGCTAAAAGCCATGTCAGCTGAGGACTGGAAAAAGAGCATTGTTGCTGCATACAACAAACAGGCAAGCCTGACAGCAGAGGATGCCATAGTGGCCTTCCTGAAGGTCATCTTTAAGTGGCCCACATTTGGCTGTGCCTTCTTCGAAGTGAAGCAAACATCGGAGCCCAACTTCCCTGATATTGTGAGGCTTGCCATCAGCAAACAGGGGGTTACAATCATACATCCTAAAACCAagGATGTCCTAGCAAGGCACCCGTTGAATGTGATTGCGAGCTGGTGCAGTGGGAGCACATACTTCCACATGACTGTAGGCAATCTGGTCAAAGGAAATAAGATTCTGTGTGAAACCTCCCTGGGCTACAAAATCGATGATTTGTTGACGTCCTACGTCAACATGTATCTGAACGAGACAAGAGCACAGAGAACCAGGAACCAGCGCTTTAACTGATACCTGACCTGACCtggaaaaatgatgaaattatttCATTCTGCCTTTAACACACTTTCACTTCCAGTCTTCATGTTTGCCACAAACAATCACACAGTATACGGTTAAACAAGCTTGATATGAATGTTAAAGGATATGTTTAGTGATTAAAATCCTCTTATTGATTCATGCATGAGATTTTAGATCCTTTAGATTTGCTTTTTCCTCTTCTGGTTATTGGTAAGATGTTGGTAAGAGTCTAGAGTTCTTTttctgatcatttatttatttatttccaaatgTAAAGAATAAGATATCGCTGTACTTTCTATGTTACTCCCAAAATCAGCTCTTATATTATAACATCATATAAATTTGCTTAGACCTGGAATATATAATACAGTGCTATGAAATAGTGATCACTTGTTTCCTAAACTAGCGGTTTGCATTACAATGTATTTACACTTTTATCTTAATGAAAGAGTTGCTTTGGTAAAAATGGCCAAATAAAAAGAACATTGCTTATTGCTTA

Function

GO: NA

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35203 lncRNA upstream 61071 19415605 ~ 19416908 (+) True G29819
TU35172 lncRNA upstream 218713 19259048 ~ 19259266 (+) True G29792
TU35041 lncRNA upstream 275880 19200315 ~ 19202099 (+) True G29674
TU35019 lncRNA upstream 282570 19192549 ~ 19195409 (+) True G29656
TU35002 lncRNA upstream 391286 19086458 ~ 19086693 (+) False LOC113533886
XR_003403464.2 lncRNA downstream 37378 19537985 ~ 19540059 (+) False LOC113533855
TU35394 lncRNA downstream 37390 19537997 ~ 19540117 (+) True LOC113533855
TU35396 lncRNA downstream 40022 19540629 ~ 19540910 (+) True G29984
TU35397 lncRNA downstream 40332 19540939 ~ 19541248 (+) True G29985
XR_004577276.1 lncRNA downstream 52445 19553052 ~ 19582043 (+) False LOC117596099
XM_034297742.1 mRNA upstream 3246 19465393 ~ 19474733 (+) True LOC117595738
XM_026920413.2 mRNA upstream 14662 19448315 ~ 19463317 (+) False sap130a
XM_026929795.2 mRNA downstream 989 19501596 ~ 19506857 (+) True gpr17
XM_026918202.2 mRNA downstream 9225 19509832 ~ 19532805 (+) True inpp5d
XM_026918211.2 mRNA downstream 9226 19509833 ~ 19532805 (+) False inpp5d
XM_034310151.1 mRNA downstream 33738 19534345 ~ 19537197 (+) True smx5
XM_026920592.2 mRNA downstream 88220 19588827 ~ 19803848 (+) False lpp
TU34871 other upstream 651059 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 660504 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 3295676 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 4183625 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 4286323 15191584 ~ 15191656 (+) True trnaf-gaa_15
TU35395 other downstream 33834 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 609523 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1514251 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 3097734 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3975344 23475951 ~ 23476023 (+) True trnaf-gaa_16

Expression Profile