RNA id: XM_034298204.1


Basic Information

Item Value
RNA id XM_034298204.1
length 4620
RNA type mRNA
GC content 0.51
exon number 25
gene id cachd1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21538999 ~ 21579079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGGTGAACAGGAACAAGCAGGTGGTGGAGGCATCGTACACAGCCCACCTGACTTCCCCGCTCACAGACATTCAGGACTGCTGCTCGATCCACCCTCCATGATGGAGTTTGATGGAAATTTTAACACAAATGTGTCAAAAACCATCAGCTGCGATCGACTGTCCCCCAACGTCAACAGCCGAGCTTTCAACCCTGGACGAGACCTCAATTCGGtgttggCAGACAACCTGAAGTCGAACCCAGGCATCAAGTGGCAGTACTTCAGCTCAGAGGAGGGCATCTTCACTGTGTTCCCTGCTCACAAGTTTCACTGCAAAAGCACATATGAGCACAGGAGCAGGCCTGTGTATGTGTCAGCGGTGAGGCCACAGTCAAAGCATGTGGTGGTGCTCATCGACCACGGCGCCTCTGTCAGCGAGACACAGCTCCAGATCGCCCGCGACGCCGCTCTCGTCATTCTCAACTCCATTGACGAACATGACAAAATCTCGTTGTTGACAGTGGCTGATGCGGTTCGTTCTTGCTCCTTGGATCAATGCTATAAGAGCTTCTTGTCTCCTGCCACCAGTGAGACCAAGCGCAAGATGAGCACGTTCATTAACAGCATTAAGTCCTCAGACAGTGCTACCCAGCATGCCATGGGCTTCCAGAAGGCCTTTCAGCTTCTGAGGAACACCAGCAGCATGGGCAGACCCCACAGCAacactgATATGGTGATAATCTACCTGTCGTCGGGCGTCACCTCTCGAGACTCCTCAGAGCATGAGAAGAGAGCCACTCTAAACGTGGTTAAAGAGGAGAATCGGCACCTCAACAACTCCGTAATGATCCTCACCTATGCTCTTATCAacgAGGGAGTAACAGGTCTGAAGGAGTTGGCGTTTATGCGTGACCTGGCAGAGCAGAACTCCGCTAAATACAGCATTTCGGATCGTACCACTCTCCCTGTTGTGAAGGGAAGCATGATGGTGCTGAACCAGCTCAGTAACCTGGAGACCAGCGTGGGCCGTTTCTACATCAACCTGCCCAACCGTATGATCGATGTGGCCTCCTTCAGCCTGCCCTACGCTGATCAGATGGGCGATGGCTTCATTATGACAGTCAGCCGGCCGTGCTACTTTGGGAACCTGCTGCTTGGAGTTGTGGGAGTGGATGTCAACCTTGCTTATATCCTCGAGGACGTCACCTACTACCAGGACTCGCTGGCTTCGTACACCTTCCTCATAGATAACAAAGGTTTCACCCTCATGCACCCATCCCTGACTCGTCCGTACCTGATGACCGAAGCCCCGCTACACACAGACATCATCCACTATGAGAATATCCCCGGATTTGCCGCTGTTCGCCAGAACATCCTCAGTTTGCCTCTGGGTAGCCAGGTGATCTCTGTTCCCATCAACTCGTCTCTGTCCTGGCATGTGAATCGTCTGCGGGATCCGAGCCGAGACGCCTACAATGTCAGCTATGCTTGGAAACTGGTGCAGGACACGTCTTTCATCCTGTGCATAGTGTACGTTCAGCCTGAGATCCCCGTGAAGCAGTTGAAGAACCTGAACACTGCCCCCAGCAGTAAGCTCTTGTACCACCGGCTGGACCTGCTGGGCCAACCCAGCTCCTGCCTGCACTTCAAACAGCTTGCTACTGTGGAGAGCCCAACCGTGATGTTATCAGCCGGGAGTTTCTCCTCTCCTTACGAGCACCTGAGTCAGCCAGAGACCAAACGCATGGTGGAGCACTACACAGCCTACCTGAGTGATAACACACGCCTCATAGCCAACCCCGGCCTGAAGtcGTCTGTCAGGAATGATGTGATGGCGACGAGTCACGTGACAGACGAATGGCTGAGTCTCATGGAGCTGAGCAGCTTGAACTGCTACATTGTGCGCCGTTACATAGCAACGCCCAATGGGGTGCTGCGGATTTACCCCGGCTCGCTGATGGACAAAGCCTTTGACCCCACCAGGAGACAATGgtaTCTGCATGCTGTGGCCAATCCTGGTTTGATCACTTTCACCGGACCTTACCTGGATGTTGGTGGAGCCGGCTATGTAGTCACCATCAGCCACACCATCCACGCCTCTAGCTCTCAGATGGCCCCAGGCTATGCAGTAGCAGTAATGGGCATCGACTTTACCCTGCGCTACTTCTATAAAGTCCTGCTGGATCTACTGCCCATCTGCAACCAGGACAAGGGAAATAAAATCCGgtgttttatTATGGAGGACAGAGGCTACCTGGTGGCCCACCCCACATTGATCGACCCTAAAGGCCACGCTCCAGCAGAACAGCAGCATATCACGCATAAGgaaccCCTGGTGGCAAACGATATCCTCAACCACCCGAACTTTGTGAAGAAGAAGctgtgtaacagtttcagtGATCGCACAGTGCAGCGCTTCTACAAGTTCAACACTAGCATTGTGGGTGATCTGACGAACCTGGTTCACGGCAGTCACTGCTCAAAGTACAGACTCACTCGTATTCCAGGAACCAACGCGTTTGCAGGCATCGTGAATGAGACTTGCGATTCGCTGGCCTTCTGTGCGTGCAGCACTGTGGACCGCCTCTGCCTAAACTGCCACAGAATGGAGcagaatgagtgtgagtgtcCATGTGAGTGCCCTCTGGAGGTGAATGAGTGTACTGGCAATCTCACTAATGCAGAAAACAGgaatCCAAGCTGTGATGTACACCAAGAGCCCTTGTCAATGACAGTGATTGAGTCTAGTTTGCAGGACACTTTGCCTCAGTGCATCAACACTCGATGCAGCCAGCGCTTCACCAGCAGTGACTGCTTTGGTGTGTTGGACTGCGAGTGGTGTGTGGTAGACAGTGACGGAAAGACACAGCTGGACAAACCTTACTGTGCTCTACAGAAGGAGTGTTTTGGGGGAATTGTAGGTGCCAAGAGTCCTTATGTGGATGGCATGGGTCTTTTAGATGAAGAGGTGGCGTCTCTTAACATGATTAAGAGTGCACCCGTGGGTCCAGTAGCAGGAGGAATTATGGGCTGCATCATGGTGCTGGTTTTGGTCGTGTACGCCTACAGGCACCAGATCCACCGCCGCAGCCATCAGCACATGTCACCTCTGGCAGCGCAGGaaatgtcagtgcGGATGTCCAACTTGGACAACGAGCGTGATGAAAGGGATGATGACAGTCATGAAGACAGAGGAATAATCAGTAACACACGCTTCATCGCTGCTGTCAtcgagagacacacacacagtcctgagCGCAGGCGGCGGTACTGGGGCCGATCAGGAACAGAAAGCGACCATGgctACAGCACTATGAGTCCTCAAGAGGACAGTGAGAATCCACCATGCACCAGTGAGCCCCTCTCAGCAGGAGTGGATGTGGGAAACCATGACGAGGAGCTGGAACTGGACACACCACCCCAGACCGCTGCACTGCTCAGCCACAAGCTCTACCCGCatcggcacacacacacacgccacccgctgcacacgcacacgcaccaCCTGCAGGCGGCAGTCACCGTTCACAGTGTGGACGCCGAGTGCTAAACCCAAAACCCCACCCACAGAGCTCACCTTTAATGCCACTTCACTCCGAGGCCTGCCTTCATCCTCCACTTCCACTTTGAGCCTAAAGCCAGACGCTGTGCCCTTCTGAGAGAGCAAAGGGAGAAAAGGGACGGGGCCGAGGCCACCTGGGGAAATCCTCTGTGATGAGGAAAGTCTTTTTAACCTGAACTCTTGAACCTGGACTTAACTGCTTTTAATGGTGTGGAGGCACAGATTTGCACTTGTTTTAAGTGCcgcaaagcatctcaaaatttttttttttaaaggaaacatgAAGCCGAAaggattatttttttactatttatttaactgGAATTGAGGTGGGAACATATGAATGGAGGGAACTTGATGATTAGTTCGTCATTAGGAGGCCCTGTTCAGCCGGACTACAGAGCAATGAGCAGTGGGATGTGTGGCACTTTACGTCACGCACACGTTACTGTGAGAATGTACtgtagtgcaaaaaaaaaaaaaaatcagatacgGATGGGCATAAGTGGCTGCACTGAACGTTGGACAGAaagcgcaaaaaaaaaagaaaaaggaacgCACACCAGCCATCTGTGAGTGGAGGCAGAAATGTGTTGCTTCTCTGAATCTGTTCATTCGCTGCATGGTTTGTTCCAAGCCTGTTATTTACGAAAGAGGAAGAGATTCTCCCGAAAACTGTAATGTTCAAAGGATCTCCAAGATTTAAGTGTTTCACCTCCCAATCACAACTGTTTTAGGACATTTTTAAAGTGACCTCAAGATGCTGAGATGTACCACTGTGTGTATAAACCTTCAATATTATATCCCTATTCAGTCCTGACCAGCCATTTTATCTGGAGTGAGTGggttattttttacaaatagCTCAGTATTGGtcagtatttttcattttccctgATGGACAAGCAGAAATATCAGAATCCTGCACTTCTGTCAAGTTGCCCATCTAATCCAGATGTTGCCTTTGTGCTTATATGATTTTAGAGTGATTATGCCTATTGTTTCCAGATtgaaaaaatatacatgtatatacatttgACCTTTAACAAAGTAGCTTATAAATGAGTTCACTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37132 lncRNA downstream 6540 21532248 ~ 21532459 (-) True G31481
TU37101 lncRNA downstream 126826 21389477 ~ 21412173 (-) True G31454
TU36922 lncRNA downstream 153723 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 255774 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 473261 21062894 ~ 21065738 (-) True G31094
TU37141 lncRNA upstream 23465 21602544 ~ 21603863 (-) True G31489
TU37143 lncRNA upstream 28317 21607396 ~ 21609167 (-) True G31491
TU37144 lncRNA upstream 36242 21615321 ~ 21615675 (-) True G31492
TU37369 lncRNA upstream 525119 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 551346 22130425 ~ 22132698 (-) True LOC117596032
XM_026919886.2 mRNA downstream 7572 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 138071 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 138072 21386910 ~ 21400927 (-) False ak4
XM_026930465.2 mRNA downstream 160225 21342709 ~ 21378774 (-) False dnajc6
XM_026922851.2 mRNA upstream 55488 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 185836 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 217481 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 243663 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 378456 21957535 ~ 21968209 (-) True atg4c
XR_004580158.1 other downstream 7571 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other downstream 7571 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other downstream 7571 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other downstream 7571 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other downstream 7571 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 2037078 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4321651 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4502070 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 5051750 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 5060754 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile