RNA id: XR_004577034.1


Basic Information

Item Value
RNA id XR_004577034.1
length 1642
RNA type misc_RNA
GC content 0.48
exon number 10
gene id LOC113532547
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9591941 ~ 9603506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttctaatTGGTGAACATTGTAAATAAGTTGTAAGTATAAAGTTATTTGGATTATTTGCCTTAATTTCTTAaggattttgtttatttataggtctGTCACTACTTTTCTTCAGTGAAACTGACCTAGCTATTTGGCAGCTTAGCTGCTTTTGTCACTGATGTTGTCTACATGATGTTGGGAAAGTGTTTTGATGCTCCTACTCATGAGGACAGACTGAGAGTGAATCATTTTCTGTCGTCATTAGTTTCCTCTCAGTGGCCAGAGCTGCACAGTGACATAACAATTTTGTGACGCAGCTGATTATTAAGTCACGTGTTCGCGTAACAGAAAACTCTGACCATTGTTAATCTGTTTAGCAGTTCGCAGACTGCTAGGGGAGCATATTTCTGTGCGGAAATGTCGAAAGAAAGTTTGTTTGAACTGTTGAAGCTTTCCATCGACTCTCCTGAAGGGGGAGTTGTGAACTTTAAGGCCCTGCGCGCGCTGCTGCACGGTATACTGAAGTGCCTGTGCGCGCGGAGGGACGCGGACGCTGGCAGGGATGTGGAGGAGAAGAGCTCAGAGCAGCAGGAAGCGCCGCTGGAAGCGCCGCTGGAACAGCTGTCCAGCCATGCACAGCTGCCGAGTCTCTCAGCCCCTGACACGAGCGCGCAACAGGACAGCGAGGAACGAGTGTCCAAGTGTATGTGTCTCATGCAAGATTTGGTAAAAGAGAATCAGGAGCTCAAGGAGGAGACACACAACCTGAAGAAAGAAGTGAAGACACTTCAAAATCAGCTTACTCAGTGTATGACTTGGGAAGCCGTGCAGACTGCTCTCATCTCCGAGAGAGAAAAGATAATGAAGGAACTGAAGGATAGCATCACAGGCCCTCCGACCTCAAGGGACGCTTTCACAGCCGTATCTGATGGAGACTTGCCCGATCTAGCTGGCCAGACCTTGTCCCAGGTCAGCAGTGGGGTTGAGCACTACCCAGAGACACTGGAAACTCTGACGGATGTAGGTCGACTACAGGAGAAGCACGAGAGCCTGGAGGCTCGTGTGAAGCACCTGGAAGgagaaagagaaaatatacTGGCTCAAATGAATCAATTGAAAACTCAGTTGGACACCATAATGGCAGATAGAAAGAAGGTATATGAATTGGAGTCCTTGGTCATGGGCACATTGAACATGTCAGGGAGTTCAGGATTAGGTGAGGAACTTGCCAAGTCTGAGGTgacagagagcaagagcagAGACAGTATCAGTGGACCAGATCAGCAGCTTCACCTGCAAACAGCTGACCTCAGGAATACAGTGCAGAAGCTGGATGAGGAGGTGCAAAATGTGAAGCAAGAACTGTTGGTGCTCAAAATGGAACAGAAGAGAAGCCCAGATAAGGAAATGCAGGATAAGACCTCAGAGTTGACAAGTGATGTGCAGGGGTTGTCCTGCAACTCCAGGCTGAGTGTGAGAAGCTTCACAGTACAACCAACCAGCTGATGAAGGATCACATGCAGGAACAAAGCCACATTGAGCACCTGTACAAGACTGTGAAGGAGCTGGATGAAAAGAAGGCAGACAAGAAGGCAGTGAAAATTGGAAAAGGGATTaaAGCTGACATGCAGGCACTGGAGACCAGGGTCCTCCAGTGTGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28638 lncRNA upstream 295 9591428 ~ 9591646 (+) True G24162
TU28636 lncRNA upstream 2356 9589318 ~ 9589585 (+) True G24160
TU28635 lncRNA upstream 3433 9588297 ~ 9588508 (+) True G24159
TU28605 lncRNA upstream 72954 9518666 ~ 9518987 (+) True G24137
TU28574 lncRNA upstream 120367 9468544 ~ 9471574 (+) False G24114
TU28656 lncRNA downstream 15535 9612389 ~ 9612613 (+) True G24177
TU28657 lncRNA downstream 16258 9613112 ~ 9615463 (+) True G24178
TU28665 lncRNA downstream 61779 9658633 ~ 9669391 (+) True G24183
XR_003403551.2 lncRNA downstream 141163 9738017 ~ 9739451 (+) True LOC113534952
TU28774 lncRNA downstream 161731 9758585 ~ 9758966 (+) True G24283
XM_034297897.1 mRNA upstream 21422 9540608 ~ 9570519 (+) False anks1ab
XM_026928006.2 mRNA upstream 23414 9540608 ~ 9568527 (+) True anks1ab
XM_026928013.2 mRNA upstream 23414 9540608 ~ 9568527 (+) False anks1ab
XM_026928022.2 mRNA upstream 23414 9540610 ~ 9568527 (+) False anks1ab
XM_026928030.2 mRNA upstream 23414 9540610 ~ 9568527 (+) False anks1ab
XM_026925408.2 mRNA downstream 31721 9628575 ~ 9636737 (+) True LOC113533334
XM_026925416.2 mRNA downstream 31721 9628575 ~ 9636737 (+) False LOC113533334
XM_026917003.2 mRNA downstream 42251 9639105 ~ 9670536 (+) False tead3b
XM_026916986.2 mRNA downstream 42252 9639106 ~ 9672645 (+) True tead3b
XM_034312998.1 mRNA downstream 42252 9639106 ~ 9670536 (+) False tead3b
TU28587 other upstream 137479 9450925 ~ 9454462 (+) False hmga1b
TU28588 other upstream 137479 9450925 ~ 9454462 (+) True hmga1b
XR_003402786.2 other upstream 3838837 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4383077 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 4503363 5088134 ~ 5088578 (+) True G21835
TU28879 other downstream 298391 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 601112 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 1157661 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 1309346 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 2607675 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2

Expression Profile