RNA id: XM_034298497.1


Basic Information

Item Value
RNA id XM_034298497.1
length 3391
RNA type mRNA
GC content 0.45
exon number 23
gene id ripor3
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5889581 ~ 5948452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCACACAGAGACACGCGCTGCTGTAGAGATGAGCATGGACAAGTTTTCACTTTCCTTTCAGAGGTAACCTTGGTCTGGAATAGGAGACTTTGAGCCTGGTGTTCAGGGAATGTCAGTGAAGTTGCAATTTGATTGTCCAGCAGAAGGTGGCATGGTGCAGAGGAGTTGCTCCTTCACTGGAGTCGACACACTGATTGGCAGATATAGGCTATCTTCTGCACGTACTTCTCTGCGCACCAAAGGCCTGGCAAGAAAATCTACAAGAATCCCCACTTCTAATCAGGTGGTTGGCAGTATTTGGGGACAACAGCCTGAGCAGGTGGACAAAGTTTTTCAGGCTTTACAGAAAGGGCTCAAGGAGTATCTTGAAGGCCACAAGACAGAGCTGGAATTCCTCTCATCCCAGCAGAGAGACACTATGAGGAATTCAAGACTGGCTTTTTTCTATGACTTGGAGAAGgaaataagagCCTTGGAAAGATACATACGGCGACTGGAATTCCAAATTAGTAAGGTGGAAGGGTTGTATGAAATATATTGCATTCAGTGGCGATTATGTCAAGGAGCTGTTAATATGAAGCGAGCATTttcactctctccatcctcaCGGGCATCACGAGAAAGTCTACTGGAGCTGAACCGCAATCATAGACACAGCTTGGAGGATATGTGTGCAATGGAAGGGGAGTTGGAGATTCTACTGGGAGAgctgcaaataaaaatgaaagGTTTGATAGGCTTTGCTCGTCTCTGCCCAGGGGATCAGTATGAGGTGTTAATCCGGCTGGGACGACAGCGATGGAGAATCAGAGGGCGGATCCAGACTGATGATAAACAGCTGTGGGATGAAGAGGAAATGGTTTTCCTCCCTCATATCCATGAGAGCTTTGAGATCAAGGTAACAGAAGTGAAGGGCCTGAGCTCCATCTTAGTTGGAATGGTGACATGCAAGTGCACAGACTTCTACACTGCACATCCACAAATGATGGTTGTTGACATTACGGAACTGGGAACCATCAAACTCCAACTGGAGGTGGTCTGGAATCCTTTTGACAGTGGCATGGTGAAGAATCTCATGTCATCTGCCAGTCGACAATCAACCCACAGCAGGAAAAGACTGTCTATGATGCGCCAGTTTCAAGACGCAGATGGCTCTTTCTCTGTTGGCTCACGTGAATCCAGGGGTGTGTCTCTGCTTAGCTACCTGTCTGACTCTGCCCAGGCACTCTCTCCATTGGTCTATGAAAGGGCTAGTCATCCTCCAATCTTCCCTGACCTTTCTATGGATTGTCAGTCAGTGGATGATGACCTTTTACAGACACCCCTTGGAGAGGGTGATGAATGTGGTGAATGTCCTTCAGAGCCCGAGACCAACTCTCCTAGTCCAGGGGACAGCAAGCGAGACACCACAAttctttttcagtgttacaGCACTCCTGACATTCTTCAACAGAATGGTGTGGTAGCCTCCAACCAAGAAGTGGAACCAGTGAAGTTGAAAGTGGCTACAGATGATCTTATAGTAGAGGAGGTAGAAGAAGGGTTTGAGGAAAAGCCAAAGGTCCTAGCGGTGGGTGTAGAAAATTCCCAAAGGAGAGCAGTGGCTATGAAGGTTGGCCTGGCTCAAGCACAGGTTGCTACTACCTTGCAGGAGATGAGTTTTGACAAGACAGAGTTAAAGCATCTGAATCTACAAATACAGCAGCTTAGCCAGATCTTAAAGAGGGACGTCTACATTCTTCAGACCTCCTCTAGTGAGGCACTAGATGTAGAAGAAGAGGAAGTGCTGGGCAGTTTTGACTTTCTGTCCATTGACTTCAACACAGAAGACAACAACTCCTACATGAGTAGCAGCAGGTTCATGGACACTAGGTTCAAAGGGAACACTGTGACAGATACAGTACTATCATTAGAGCAGCAACAAACAGGGCACATGGCAAAAAGAACAGACAATGAGGACAGAAGTCCACTCAGCACTGGAGAGTACACTCTCGATCAAGCCTTGGAGATCCACCTCAACATCTGTATTGCACTACTGCGAGCACTGAAGGTATCTAATTTGGAGTACATGCAACAGTATATCCTGGAAGAACTATCACATCAAACTGAAGTGCTTGAAAAAATCACCACTTTTGCACAGAGGAAGACTCACGATATCTCAGCAACAGAAATGTGGTCTGGGGCACCAAAGCTGAGAAATGTTATGATGTTGTGGGACGAGTGCTGTGGAAGTACCCCAGCATTTTGTTGCACTGCTAAATCTTTTCTCAGGATGCTACGCAGGCGGTTCATTCACAAAGTGAAAGCTAAGTTGCCAGGCCAGGCGGATACAgTCTTTGCTCAGTTGTTGCAGCAGGTGCAGTCCTGCTCTATGATGGTCCCACTAGCAGCGTGCACAACAGATCTGGTGACTTTGTTTCAGTTACATGTCTACCTCAGCCACTGGAAGGTCACCAACTTTGGAGAGCATATCTCTCACATGTCCAGAGAAGtGTATTTAGTATCATGCCTACAGACCCCAAAGAGGAGGAGTGTTCTCAAGAAGCTGAAGGGAAGGAGGATCTCAGAACTGCAACCAATGGGACAAACCCTCCAGCTCCTAGCCAAGTTACTTACAGATGATAGTCACAAGGTTGCAGTTTCAGCAACCTCCTGCCTCTGTAGGGCCTCAGGCTATAAGTCCTTCAGGTTAAAGGCCCTGGTTCATTATACATGGCTGTTGAAAGACAATGACATTCAAGTGCAGCAGCAGGCTTGTTTAGCACTGAAATGCTTAAAGGCCCTTGAAAGTGCTGAGCAGGTGGCTGAGCTGTGGCACTCCACAGATGAAGAGTTAAGGAACGCAGCCAGAGAGACCATTCTTTCATTTGGGAAAAAAGGCCACAAAGCCTTCCAGAGAATGGACCAGATCTGCGCTGAGTTACAAGAggaaatttacaaaaatttaaaaacagaaatcacAGTCTTCTAGTGATTGCATAAATTTGGCTAAGTCTTTTGCTGCTGATCAGAAGACATCAAGAAGTGTAAGcaattatggaaaaaaataaaataaaaagtaaaaaactcCAGTAATATCCCACACAGTAGCAGTTACAGAAAAGAGACCAAAAGCTAGACTTTGCATGCAAAAATATTCAGTATTGAAGTAACTCAAAATGGACTGTAGTCATACAAAGGGCACTGCTTAATAGTGCCTTTGAGTCTTATTTTATTCAGTCCATTTTTGTATAAAACCATTCGAAATATTATAAAAAGCATGATCTATATTTTCACAATAAAACATAGTGCCAATAATTGTAACTAATGTGTTAAAAACCAaccatatacagacacagtgtctggttaaaaaaaaaaaaatatatgtagatatatatatatgttaggATT

Function

GO: NA

KEGG:

id description
K24818 RIPOR, FAM65; Rho family-interacting cell polarization regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26406 lncRNA upstream 20668 5868676 ~ 5868913 (+) True G22142
TU26403 lncRNA upstream 23206 5866033 ~ 5866375 (+) True G22139
TU26402 lncRNA upstream 24184 5865163 ~ 5865397 (+) True G22138
TU26398 lncRNA upstream 35885 5853450 ~ 5853696 (+) True G22134
TU26389 lncRNA upstream 38634 5843157 ~ 5850947 (+) True G22125
TU26523 lncRNA downstream 8369 5956821 ~ 5964395 (+) True G22244
TU26611 lncRNA downstream 26147 5974599 ~ 5974920 (+) False tmem74b
TU26612 lncRNA downstream 29268 5977720 ~ 5977942 (+) True G22328
TU26647 lncRNA downstream 101162 6049614 ~ 6049905 (+) False abraa
TU26656 lncRNA downstream 105692 6054144 ~ 6054618 (+) True G22370
XM_026913686.2 mRNA upstream 132893 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 188912 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 336607 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 336607 5550065 ~ 5552974 (+) True mych
XM_026915801.2 mRNA upstream 351144 5522925 ~ 5538437 (+) True ergic3
XM_026937631.2 mRNA downstream 19746 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 88262 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 88262 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 88262 6036714 ~ 6049905 (+) False abraa
XM_034310342.1 mRNA downstream 88262 6036714 ~ 6049905 (+) False abraa
XR_003402786.2 other upstream 136477 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 680717 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 801003 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1129936 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1229458 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3502473 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3502473 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3643489 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 3946793 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4249514 10197966 ~ 10198455 (+) True G24500

Expression Profile