RNA id: XM_034298935.1


Basic Information

Item Value
RNA id XM_034298935.1
length 1527
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC117595909
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17179243 ~ 17184683 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAGTCTGGATAGATAGCTGTGATTTTACGATCAGTAGTCGTTGCTTTTTTGCTGTGAAAAAACATTTGGACTCAGGGCCCACTATTATTGATtagtgttattgttttttttgcattgttattGTTCCGTAGATTTATGAGCTGCTGTTTTAAACTTTGTAGCCAGCGATAGGTGAATTTTTACAGTTATTACATGCTGGAAAAATATGAGACAGCACAGTTAGAGGATATCTTAGGAAACTATGTGGTACAGATTTTTAAGAATAATTCAGTTGCACATACAACAGCAGCTATAATATCTGTGTGTGATATCATCCTCAAAATCCACTCTTCAGTTTATAAAACCCTCTCATACTCTCAGTTTTATCCAGAcatattttaccatttaaaatatattagcaTAAAGTATAATTAAGTAGAATTAATAGAAACCTGAGTAATCTTATGCCTCTCTGATTTATCAAACACCAAATGAACCTGCAGAAGAACTGAGAGACAAACATGAGCCGCAAGCAAGAAGACTGCTACTTCTTCTTTAACTCCACATGCACCAAGGGGGATCGTTGCCCTTTCCGGCACTGTGAAGCCGCCAAGGGCAGCAAGACGGTGTGCAAATTCTGGCTGCAGAACCGCTGCTTAAACAAGGCATGCAGATTTCGGCACATGGACATCAAGAAAAACCGCAGAGAAGTTCAGTGCTACTGGGAAAAGCAGCCAGGCGGTTGCCGAAAGCAggactgcacctttaaacaccAGAAGCCACGGACCATCAGACGGCTTCCTGTTCTCCAGGCCAAAAAGTCTCTAGCTTCTGAGAAATGGAATGAAAATCCATCACCTTCTGATGTGACACCTGGCCAGAAGAAGAAACACTCAGGGAGCTTCTGCTCGGCTGATGCTGAGCGACTCCACTGCAAATGTGTTAAGAAAAACCAGCCAGACCAATGCAGAAAACAGGACTGCAACTTTAAGCCTGAGAAGTCCATCAGACAGCATATTGTTGTCCCAGCCAAAGACGATGAGATCAACTTGATAATCAAAGCCCTTGAGGAGCTTAAGCTGGAGGACAGTGTGAACACCCATTTAAGAACAGCTGGGTCTCCTGCTTCTGAGGACTTCTATGAAAGTCTATCAGTAAAACAGACACCTTGTAATGTGAGACCTGGCAGGAAGAGAAAGACTGCATGGAGCGTCTGCTCGAATGATGAACCACCCTGCAAGCGTGCTAAGTTTCACCATCTTTAACCCAGGAGAGAAGACAATCCCATTTTCCAGACTCCTGGACCATCTGCCTTAAGACgaatgaatacaaataaaactgcattCTCATATATTCTGGAAGTTTCTATGATTTGTTCCTGCGGGGAAATGCCATCTCACATTAGGAGgcaaatattttacattaagtTGAGTGCATAATTCTGGTCTTAGTTACACAAAGGGATTTATGTGTGAGggtttatgtaacgtttatttCTATTAGTGCAAGATATATTTTAGAATAGAGAATTGTCTCAAAGCCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34067 lncRNA upstream 41394 17100226 ~ 17137850 (+) True G28889
TU34038 lncRNA upstream 125498 17052930 ~ 17053746 (+) True G28865
XR_003402553.1 lncRNA upstream 335859 16842244 ~ 16843385 (+) True LOC113524191
TU33821 lncRNA upstream 448039 16729214 ~ 16731205 (+) True G28676
TU33701 lncRNA upstream 643899 16533875 ~ 16535345 (+) True G28574
TU34197 lncRNA downstream 239140 17423821 ~ 17426323 (+) True G28997
TU34246 lncRNA downstream 345894 17530575 ~ 17535351 (+) True G29036
TU34247 lncRNA downstream 345894 17530575 ~ 17532176 (+) False G29036
TU34335 lncRNA downstream 499140 17683821 ~ 17688735 (+) True G29105
TU34336 lncRNA downstream 510073 17694754 ~ 17764773 (+) True G29106
XM_026913984.2 mRNA upstream 113145 17054132 ~ 17066099 (+) True hyi
XM_026926533.2 mRNA upstream 704098 16464943 ~ 16475146 (+) True lrrc41
XM_026943326.2 mRNA upstream 715708 16460401 ~ 16463536 (+) True LOC113544464
XM_026938693.2 mRNA upstream 778145 16398409 ~ 16401099 (+) False tomm6
XM_026938572.2 mRNA upstream 785237 16391415 ~ 16394007 (+) False tspo
XM_026917771.2 mRNA downstream 207648 17392329 ~ 17396139 (+) True glulb
XM_026917748.2 mRNA downstream 248667 17433348 ~ 17437899 (+) True znf648
XM_026917757.2 mRNA downstream 248745 17433426 ~ 17437899 (+) False znf648
XM_026917816.2 mRNA downstream 280900 17465581 ~ 17468158 (+) True gadd45ab
XM_026913172.2 mRNA downstream 481903 17666584 ~ 17767280 (+) True tgfbr3
TU33403 other upstream 996941 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1884890 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1987588 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 3677948 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 3679879 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 1590089 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 1632721 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 2349760 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 2925449 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 3830177 21014858 ~ 21017447 (+) False insl5a

Expression Profile