RNA id: XM_034299801.1


Basic Information

Item Value
RNA id XM_034299801.1
length 5931
RNA type mRNA
GC content 0.46
exon number 27
gene id farp2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18858439 ~ 18917006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATTCCTCCAATCAGAACGTTTCGGGATTCTTCCAATCAGATGACGCCTTTGTTTGCGGCTCGCGCCTGTAACTCCAGTCGCAAGTAATtcccgaaaaaaaaaagacttgaggaaaagaaaacgGTGCACTAATACGAGgcagtgtgtgtgtgtgagagagaagccCGGCTGCGCCGTGAGCAGCAATGGGTGAGATCGAGGGCACATACCGGGCGCTGCCTACTCCAGGCACACGCCTGGGCTCTCAGTTCAACCCCGGCATCAGCACGCTGGAAACCGGGCAGAGCCTGAACTCTTCTGTAGCAGGAGGCAAAGGCAAGTGCCTGCAGATCCGTGTTCAGGGCCTGGACGATGCTCAGGAGTTCTACGAGCTTGAGGCTAAAGCAGATGGACAGACCCTTCTTAATGACGTGTATCGCAGGATCAATCTCATCGAGAGCGATTACTTTGGTCTGGAGTTCCAGAATGTGCAGATGAACTGGGTTTGGCTGGAGCCCACCAAGCTCATAGCGAAACAAGTGCGACGACCAATGAACACACTCTTTCGGTTGTCAGTGAAGTTCTTCCCACCAGATCCTGGCCAGCTTCAGGAGGAATTCACCAGGTACCTATTCTCTCTGCAGATGAAGCGAGATCTGATGGAAGGCCTACTGAACTGCAGCGAAAACACAGCAGCTCTGCTGGCCTCTCACCTGGTCCAGTcTGAGATTGGAGACTATGATGATGTTGCAGACAGGGAGTATCTGAAGCTCACTAAGCTGCTGCCGCACCAGGAGCAGTTGCAGGAGAAGATCATGGAGATCCATCGCAGACATGTGGGTCAGACACCTGCCGAGTCTGATTTCCAAGTGCTGGAGATCGCCCGTAAGTTGGAGATGTACGGTGTGCGTTTCCATCCTGCAGCCGACCGTGAAGGCACCAAGATCAACCTGTCAGTGGCCCACATTGGCCTGCAGGTCTTCCAGGGCAACACCAAGATCAACACATTCAACTGGTCTAAGATTCGCAAACTGAGCTTCAAAAGGAAGAGATTTCTTATCAAGCTGCACCCCGAGGTCCATGGTCCTCATCAGGACACACTGGAGTTCCTGATGGCTAGTCGTGATCAGTGCAAGATCTTCTGGAAGAGCTGCGTGGAGCACCACGCCTTCTTCCGTCTGTTTGATAAACCAGAACCCAAAGccaaagccattttttttagcaGGGGATCTTCCTTCAGATACAGtGGGCGAACTCAGAAGCAGCTGGTGCAGTATGTTAGGGACAGTGGTGTGAAAAGAACCCCCTACCAAAGGAGGAACAGCAGTAAAATCCGTATGTCAACTCGCTCCTTAGCCACTGATTTTCCTAAACAGAGTCTGTCCTTCAACGACAGCCTTAAGATTTGCAGTTCTCCCCCATCTGCCACTGTTTCCTTCCACTCTCTGCACTCATCCATCTCTCCTGTACGACTGGATAACAATAGCAAACCTCAAATCCAGCagatccagcacatcccatcTCTCCAGCAGCCTGTGAGACCACCTACCCCTGTGAAGGAGGAGCCTGCAAAGATCCACCCTCCATCTAACTCAGCCTTCCCAGGTGCCCCTTACAACCCGCCCCAGCTGTCTCCCTTTGGGTCTAAGTGTCCGCTGAGTGTGTCCTCGTCCTTCCAGATGTCCACGCTCAGCTTGCCCAGCCAGGCACCTTCGAGTCCTGTTCTCAACGAGGGGGGCAGCGCCAgactggaggaggaggaggagctcaGGAGGAAGAGATATCCCACTGATAAAGCCTACTTTATTGCCAAAGAGATTCTGATGACTGAGAGGACGTACCTGAAGGACCTGGAGGTTATCACAGTGTGGTTCCGCAGTGCAGTGATTAAAGAGAATGCCATGCCTGAAGGCCTGATGACCCTCCTTTTCTCCAACATTGACCCCATCTATGAGTTTCATCGAGGCTTTCTCAAAGAAATCGACCAGAGGCTGGCTCTCTGGGGAGGGCGCTCTAACGCTCATGTGAAGGGAGATTACCAGAGGATTGGTGACGTTATGCTGAGGAACATGTGTGCCCTGAAGGAGTTCACCAGCTACCTACAGAAGCACGATGAGGTATTGACTGAGCTGGAGAAGGCAACGAAGCGTGTAAAGAAGCTGGAGACGGTGTATAAAGAGTTTGAGCTGCAGAAGGTGTGTTACCTGCCCCTCAACACCTTCCTGCTCAAACCCATCCAGAGGCTCATGCACTACAAGCTGATCCTGGAACGCCTGTGTAAACACTACTCCCCTGAGCACAGGGACCACCACGACTGCAAAGaggCCCTAAAGGAAGTGGCAGAGATAACAGCTCAGCTGCAAAGTAGCCTCATCCGACTGGAGAACTTCCAGAAACTGACAGAACTGCAGCGGGACCTGATTGGCATCGAGAACCTCACTGCTCCTGGCAGGGAGTTCATCAGGGAAGGCTGCCTTTATAAGCTTACAAAGAAAGGCCTGCAGCAAAGGATGTTCTTCCTGTTTTCAGACATGCTCCTTTACACAAGCAAAGGTGTCACAGCCACCAACCAATTTAAAGTTCATGGCCAGCTTCCCCTCCATGGCATGCTTGTGGAGGAGAGTGAGAACGAGTGGTCAGTCCCTCACTGTTTCACCATCTACTCAGCCCAGAGGACCATCGTGGTGGCTGCCAGCTCTAAAGTAGAGATGACTAAGTGGATTGAGGACCTGAACATGGCGATTGATATTGCGAAGAAGACACAGGAGAAATCGGATATATTTCTCGACCCAAGTCTGTGTGATCGCTCCAACAGGTCGTCTGATGAGGTGTCATTGGAGCAGGAGTCTGAGGACGATGTGAACTCGTCCCGATGCTCTCTGGACAAACAGAGCCACCATCGTGCCAACACCACCATGCACGTGTGCTGGCACCGCAACACCAGTGTCTCCATGTCTGACCACAGCCTAGCCGTGGAGAACCAGCTGTCTGGCTACCTGCTGAGGAAGTTTAAAAACAGTAACGGCTGGCAGAAATTGTGGGTGGTCTTCACCAACTTCTGTTTGTTCTTCTATAAGACACACCAGGATGACTTCCCTCTGGCTAGCCTGCCTCTTCTGGGTTACACGGTCAGCACACCTGGGGAATCAGATAGCATTCACAAAGAATATGTCTTCAAGCTGCAGTTCAAGTCCCATGTTTATTTCTTCAGGGCCGAAAGCGAGTATACCTTTGAAAGGTGGATGGAGGTGATAAAGAGTGCAGCGAGCGCCGCCGGCAGGGTGAGTCTGCTCATCCCTAAAGGCCCAGAGGAGATGAATGGGAACTGAAGATCGAAACTGAGGCTGGTTGTCCTCCTGGAGCTCGGGGCTGGGCCCTGAAGACTGCCATGAGTCTAcgctattattttatttaatcctCTCTGTTTCGTGGCTCCTAATGCCATTATCTTCATCATTTCTGCTGAATGGAAATGGAAGAAGTCGGGGGCCGTCTAAGAGCTCGactctttctatttttttttaatctttgacaTGTGGGCTATGACCCCTTCATTTGAAAGTCATGCCAAGTTCTGCAGTTTTCCAGAAGAgtaatataactgtaaatggcTATTATGTTCTATTTTGGTTCATGTGGTCTTGCTACAATTTCAGCGGTCACATTTCTAAAATTGCCAGTTCTTCATCTCAAAACTGGGAGCTCGTCCAGAGCTGCCAAATGGTATTGTCTCAAACCCATTAGGACTTCCTGAATGGGTTTCAATGTCATTAAAGCTCATTTTGTGTAATCTCAATCTCAACTCCTCATATTTATGGGAGCACAGTAACGGAACACTGCCGAAAGGAGTAATGGACTAAATCATGTCTGGATGGTAGAGTAAGTGAAAAGAGTGAAGAAAGAAGGACGCAGAACCACAGTGGCGTGGGCCAGAGGATACGGCGGCACTCAGGAGATGATGTGGTTTGGGAAAACAGCCATCGTCCTCTGTAAACTGTTGTAAAAGTGATGGTATTGAATTAAGGGCACTGAAATTGAGATGAGCGACAGAATAATTGGTGATCTGGTGTGGACACACAAGTGAGTAAAGTCTGTAGTGTGTTTCTGTTCCTGTTCAGTTCCACATTCATCACAGTATGACTTTGGTGatgttatatttttgttatactttattaaaatgCCTGGTTAATTAACAGTTATGTATGGAACTGCTTTGACTCATGTAAATGTAAGAAATATTGAGATATATTGAAAAGGCTCATTCAGAGAGTATTTAACAGTTTTGTTACTGACAGTGCATTTATGCACGCTTCTCATctctaaattttatttttatttttatttctttttttttttctggagaaCCACAAGGGGGAGTCAGCATCTAGAGTATAAGTACAGACTTAGTCCTGGTGCTCACTGATGCAAAAGCTAACTACTCTTTCTGCCTTGTGATTAGGGTAGTTAACTTCGGCTTCTATTAAACATCTGGCTCTGCTACGTTCTCCACTTCTCCTGCATACTAATCGTGAATAAGGGAACATGGACCTTGTGCAAAACTGGTCTCATGAAAGTTACAGTTCATGTGCTTAAACCAAAAAAAGGTCAGTGTGATGAggttttttcagtttctttctcttttatagCTTGTAGAGAAATGTTGAAGCAAACATTATACTGTTGTCTGTATTATTAATCCTTTGTTCCTCTATAAGGGCCAGTTCTTTTATGTAAATATCTGGGTTGTCATATGGTGAAGCAGAATTtcttttaaaggaatatttctgTGAATAGTTTGATTTACACAATGTTTTCCATACCCCGAATGCAACTGATTAACCAAGACAGGTTTGATGATTGAACATTGCTTCTGCATCTGCAAGCTACAAGGATAAGTCCTCACGCACTCACCTCAATGGACAAAAGGTTtcataaaatagaaaaataagtCTGTGACGAAATTAATTTCATCCAAATCACTTCTGATGTACaattctgccttcagtcttcgGGCTCCTTCCTGAGTCTGATGCTTGTGTGGAGTGATGTTAAActgctgaggaagaaagtgattctgGCTTCGGTGTGGCTGCTACTACTGGTTTTTGCTATGTGAATAacttatgttctttttttttttttatacattacaaCAATGTGCCATATagtcagaaaccacataaaatagtagctataagcttcctccagctccagtgcaaaaataaagcaaacatcAGGCATCAAACCCATCTTGGCTGATCAACTGTATTGGTATAAGGAGAGCATTGTGTATGTTTAATTTTCGCCTGAAGTGTCCCTTTAAAATTTTGAAACATGTTATGTTAACTCGTAAGGGCTGAGATTAACTGTAAATTAACTCAATCTTATTTGGGAGATTTGACCTATGATATTGAAAGGATCATAGTCTTCACTAGGCTGTTACATTGGGACATGAATGCTGTACTGGGTCCGACCAAAGACCTAAAAAGTCACATATAAGACTGAAAACCTTAGGCTGAGGTTTTTTCAGCCACACATTAATCGGTACTAGTGACTTTTTggatacacttttttttttttttttttttttttttttaatataagtaaGCAGATATTATGCACATCTCATGAGTCCTGCATTGCTAGCGGTTTTACCAAACCTTTGTTTGGTTCTCattacttttatacactttttacaAAGACTGGAATTTGTAATGTTTCACTCTTGTGTATCCCGCCATAACAGACATTTTCATATGACTGTCACGTTTAGAGTTTAGAATGAGCTTTACCAAAGCTCCAGGTTGCTTCTGTCATTCAGAGGAAATCTGAACAATTCTGTTTCTGTTGCACGTTGCTCCTATTTATTGTGTAGCATGTTGCTATAGTCAGTTCCATgtcattacatatttaaaagataactaataaaaacaaactggTATTAATTGGG

Function

GO: NA

KEGG:

id description
K06082 FARP2, FRG; FERM, RhoGEF and pleckstrin domain protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34870 lncRNA upstream 22718 18818725 ~ 18835721 (+) True G29569
TU34849 lncRNA upstream 167432 18688653 ~ 18691007 (+) True G29561
XR_003403164.2 lncRNA upstream 391119 18464884 ~ 18467320 (+) False LOC113530672
XR_004580300.1 lncRNA upstream 391119 18464886 ~ 18467320 (+) True LOC113530672
XR_003403713.2 lncRNA upstream 498404 18358202 ~ 18360035 (+) True LOC113536874
TU34910 lncRNA downstream 16595 18933601 ~ 18948514 (+) False boka
TU34992 lncRNA downstream 133220 19050226 ~ 19050438 (+) True G29640
TU34993 lncRNA downstream 133818 19050824 ~ 19051043 (+) True G29641
TU35001 lncRNA downstream 168918 19085924 ~ 19086161 (+) False LOC113533886
TU35002 lncRNA downstream 169452 19086458 ~ 19086693 (+) False LOC113533886
XM_034314518.1 mRNA upstream 1277 18841437 ~ 18857162 (+) True LOC113527312
XM_034311144.1 mRNA upstream 243614 18600959 ~ 18614825 (+) True dzip1l
XM_026930929.2 mRNA upstream 444484 18298382 ~ 18413955 (+) True LOC113536767
XM_034300733.1 mRNA upstream 447256 18298375 ~ 18411183 (+) False LOC113536767
XM_034311072.1 mRNA upstream 711522 18139055 ~ 18146917 (+) False LOC113532395
XM_034298244.1 mRNA downstream 15677 18932683 ~ 18948737 (+) False boka
XM_034298238.1 mRNA downstream 15677 18932683 ~ 18948737 (+) False boka
XM_034298232.1 mRNA downstream 16153 18933159 ~ 18948737 (+) True boka
XM_034298227.1 mRNA downstream 16181 18933187 ~ 18948737 (+) False boka
XM_026921984.2 mRNA downstream 16223 18933229 ~ 18948737 (+) False boka
TU34871 other upstream 31519 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 40964 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 2676136 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 3564085 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 3666783 15191584 ~ 15191656 (+) True trnaf-gaa_15
TU35395 other downstream 617435 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1193124 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 2097852 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 3681335 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 4558945 23475951 ~ 23476023 (+) True trnaf-gaa_16

Expression Profile